Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 4,462,655 IS1 (+) +9 bp intergenic (‑85/‑100) yjgM ← / → yjgN predicted acetyltransferase/conserved inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 4462655 =0 (0.000)97 (1.220) 55/100 0.1 100% intergenic (‑85/‑108) yjgM/yjgN predicted acetyltransferase/conserved inner membrane protein
?REL606 4521571 = NA (NA)noncoding (768/768 nt) IS1 repeat region
* ? REL606 = 44626630 (0.000)93 (1.190) 44/98 0.6 100% intergenic (‑93/‑100) yjgM/yjgN predicted acetyltransferase/conserved inner membrane protein
?REL606 = 4506109 NA (NA)noncoding (1/768 nt) IS1 repeat region

TTACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCC  >  REL606/4521521‑4521618
                                                  |                                               
ttACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCgg                                                 >  1:3205253/1‑51 (MQ=255)
ttACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCgg                                                 >  1:5787671/1‑51 (MQ=255)
 tACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCggg                                                <  1:5610065/51‑1 (MQ=255)
  aCGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGt                                               >  1:1089884/1‑51 (MQ=255)
  aCGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGt                                               >  1:5155880/1‑51 (MQ=255)
    gCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTaa                                             <  1:1320403/51‑1 (MQ=255)
      cATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATg                                           >  1:6960556/1‑51 (MQ=255)
      cATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATg                                           <  1:5504871/51‑1 (MQ=255)
      cATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATg                                           <  1:2721235/51‑1 (MQ=255)
       aTTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGa                                          >  1:4626729/1‑51 (MQ=255)
        ttCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAAt                                            >  1:5457054/1‑48 (MQ=255)
        ttCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGAc                                         <  1:3812770/51‑1 (MQ=255)
         tCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACt                                        <  1:5310991/51‑1 (MQ=255)
          cGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTc                                       >  1:3566380/1‑51 (MQ=255)
           gtgtGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTcc                                      <  1:6814742/51‑1 (MQ=255)
           gtgtGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTcc                                      >  1:3884473/1‑51 (MQ=255)
             gtgGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCaa                                    <  1:1945626/51‑1 (MQ=255)
             gtgGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCaa                                    >  1:3648469/1‑51 (MQ=255)
             gtgGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCaa                                    >  1:5982063/1‑51 (MQ=255)
              tgGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAAc                                   >  1:4607296/1‑51 (MQ=255)
               ggTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACt                                  >  1:2665696/1‑51 (MQ=255)
                gTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACtt                                 <  1:4567565/51‑1 (MQ=255)
                 ttttGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTa                                >  1:4872232/1‑51 (MQ=255)
                 ttttGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTa                                <  1:3610894/51‑1 (MQ=255)
                  tttGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTa                                >  1:3546245/1‑50 (MQ=255)
                  tttGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTAt                               >  1:3879253/1‑51 (MQ=255)
                  tttGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTAt                               >  1:1194810/1‑51 (MQ=255)
                  tttGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTAt                               >  1:3034022/1‑51 (MQ=255)
                  tttGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTAt                               <  1:2191543/51‑1 (MQ=255)
                  tttGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTAt                               >  1:7072587/1‑51 (MQ=255)
                  tttGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTAt                               >  1:1757545/1‑51 (MQ=255)
                  tttGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTAt                               >  1:1382692/1‑51 (MQ=255)
                   ttGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTAtt                              <  1:2187981/51‑1 (MQ=255)
                   ttGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTAtt                              <  1:3841879/51‑1 (MQ=255)
                    tGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTg                             <  1:2681106/51‑1 (MQ=255)
                    tGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTg                             <  1:1821009/51‑1 (MQ=255)
                     gCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGa                            >  1:6109907/1‑51 (MQ=255)
                      cTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGAt                           >  1:1562331/1‑51 (MQ=255)
                      cTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGAt                           <  1:2640524/51‑1 (MQ=255)
                      cTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGAt                           <  1:6265500/51‑1 (MQ=255)
                       tttGGTGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATa                          >  1:6925138/1‑51 (MQ=255)
                       tttGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATa                          <  1:5290368/51‑1 (MQ=255)
                       tttGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATa                          >  1:3143984/1‑51 (MQ=255)
                       tttGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATa                          >  1:2923247/1‑51 (MQ=255)
                       tttGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATa                          <  1:4480405/51‑1 (MQ=255)
                        ttGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAg                         >  1:1229706/1‑51 (MQ=255)
                         tGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAgt                        <  1:6269763/51‑1 (MQ=255)
                          ggCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAgtg                       >  1:5235532/1‑51 (MQ=255)
                            cGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGtt                     <  1:6688807/51‑1 (MQ=255)
                              aaTATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATCGTGtttt                   >  1:4084794/1‑51 (MQ=255)
                              aaTATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGtttt                   <  1:2702638/51‑1 (MQ=255)
                              aaTATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGtttt                   <  1:1283100/51‑1 (MQ=255)
                              aaTATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGtttt                   <  1:2061588/51‑1 (MQ=255)
                               atatGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTa                  <  1:298913/51‑1 (MQ=255)
                               atatGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTa                  <  1:146804/51‑1 (MQ=255)
                               atatGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTa                  <  1:5365383/51‑1 (MQ=255)
                               atatGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTa                  <  1:5746653/51‑1 (MQ=255)
                                tatGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTAt                 <  1:4339750/51‑1 (MQ=255)
                                tatGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTAt                 <  1:6369102/51‑1 (MQ=255)
                                   gggAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt              <  1:6530570/51‑1 (MQ=255)
                                     gAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa            >  1:1998094/1‑51 (MQ=255)
                                     gAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa            <  1:4803796/51‑1 (MQ=255)
                                     gAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa            >  1:6683914/1‑51 (MQ=255)
                                       aTAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa          >  1:5515004/1‑51 (MQ=255)
                                       aTAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa          <  1:2992947/51‑1 (MQ=255)
                                       aTAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa          >  1:3630185/1‑51 (MQ=255)
                                       aTAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa          <  1:1979570/51‑1 (MQ=255)
                                       aTAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa          >  1:6169281/1‑51 (MQ=255)
                                        tAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt         <  1:2313373/51‑1 (MQ=255)
                                        tAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt         >  1:3375957/1‑51 (MQ=255)
                                         aGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa        >  1:6420517/1‑51 (MQ=255)
                                         aGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa        <  1:3133003/51‑1 (MQ=255)
                                           aTACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt      >  1:5889020/1‑51 (MQ=255)
                                           aTACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt      <  1:6967576/51‑1 (MQ=255)
                                           aTACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt      >  1:7211511/1‑51 (MQ=255)
                                            tACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg     <  1:6710173/51‑1 (MQ=40)
                                            tACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg     <  1:2387325/51‑1 (MQ=40)
                                            tACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg     >  1:1331512/1‑51 (MQ=40)
                                            tACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg     >  1:5055276/1‑51 (MQ=40)
                                             aCGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc    >  1:5158726/1‑51 (MQ=38)
                                             aCGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc    <  1:4890409/51‑1 (MQ=38)
                                               gcgGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGccc  >  1:4089964/1‑51 (MQ=33)
                                                  |                                               
TTACGCCATTCGTGTGGTTTTGCTTTGGCGAATATGGGAATAGATACGCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCC  >  REL606/4521521‑4521618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.