New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3894996NA (NA)113 (1.420) 57/100 0.1 100% noncoding (1443/1443 nt) IS150 repeat region
?REL606 4049580 = 0 (0.000)coding (324/1242 nt) yihS predicted glucosamine isomerase

Only 100 of 115 total aligned reads displayed.

TGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGCCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCC  >  REL606/4049531‑4049630
                                                 |                                                  
agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt                                                   <  1:1052653‑M2/2‑1 (MQ=255)
agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt                                                   <  1:3832887‑M2/2‑1 (MQ=255)
agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt                                                   >  1:5518236‑M2/50‑51 (MQ=255)
agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt                                                   <  1:301443‑M2/2‑1 (MQ=255)
agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt                                                   <  1:5676924‑M2/2‑1 (MQ=255)
agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt                                                   <  1:6859662‑M2/2‑1 (MQ=255)
agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt                                                   <  1:2654823‑M2/2‑1 (MQ=255)
agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt                                                   >  1:3832729‑M2/50‑51 (MQ=255)
agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt                                                   >  1:1964020‑M2/50‑51 (MQ=255)
agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt                                                   <  1:1926597‑M2/2‑1 (MQ=255)
agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt                                                   >  1:6696996‑M2/50‑51 (MQ=255)
 gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  >  1:6804608‑M2/49‑51 (MQ=255)
 gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  >  1:1679166‑M2/49‑51 (MQ=255)
 gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  <  1:7186443‑M2/3‑1 (MQ=255)
 gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  >  1:4290947‑M2/49‑51 (MQ=255)
 gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  <  1:7041658‑M2/3‑1 (MQ=255)
 gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  <  1:6960942‑M2/3‑1 (MQ=255)
 gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  <  1:2351153‑M2/3‑1 (MQ=255)
 gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  <  1:140833‑M2/3‑1 (MQ=255)
  acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTg                                                 >  1:6495200‑M2/48‑51 (MQ=255)
   cctatatgcctcgtgtttaactgtccaactttttggggtcagtacatttnc                                                <  1:2215811‑M2/5‑3 (MQ=255)
   cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTgg                                                <  1:2896005‑M2/5‑1 (MQ=255)
   cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTgg                                                <  1:6595506‑M2/5‑1 (MQ=255)
   cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTgg                                                <  1:5111707‑M2/5‑1 (MQ=255)
    ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGa                                               <  1:5709405‑M2/6‑1 (MQ=255)
    ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGa                                               <  1:4443521‑M2/6‑1 (MQ=255)
    ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGa                                               <  1:2188635‑M2/6‑1 (MQ=255)
    ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGa                                               >  1:5310376‑M2/46‑51 (MQ=255)
     tatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAg                                              <  1:4426930‑M2/7‑1 (MQ=255)
      atatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAgg                                             <  1:1617655‑M2/8‑1 (MQ=255)
       tatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGc                                            >  1:231131‑M2/43‑51 (MQ=255)
       tatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGc                                            >  1:4609051‑M2/43‑51 (MQ=255)
       tatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGc                                            <  1:2327003‑M2/9‑1 (MQ=255)
        atgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCa                                           <  1:1633142‑M2/10‑1 (MQ=255)
        atgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCa                                           >  1:433619‑M2/42‑51 (MQ=255)
            ctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATcca                                       <  1:606690‑M2/14‑1 (MQ=255)
            ctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATcca                                       <  1:6358601‑M2/14‑1 (MQ=255)
            ctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATcca                                       >  1:3105264‑M2/38‑51 (MQ=255)
             tcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATccac                                      >  1:7089123‑M2/37‑51 (MQ=255)
              cgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATccacc                                     >  1:4378445‑M2/36‑51 (MQ=255)
              cgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATccacc                                     >  1:412258‑M2/36‑51 (MQ=255)
               gtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATccacca                                    >  1:5178473‑M2/35‑51 (MQ=255)
                tgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCcaccac                                   <  1:3805186‑M2/18‑1 (MQ=255)
                tgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCcaccac                                   <  1:5568537‑M2/18‑1 (MQ=255)
                 gtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACg                                  <  1:3348425‑M2/19‑1 (MQ=255)
                 gtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACg                                  >  1:6582732‑M2/33‑51 (MQ=255)
                 gtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACg                                  <  1:5926790‑M2/19‑1 (MQ=255)
                  tttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGc                                 >  1:5458094‑M2/32‑51 (MQ=255)
                  tttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGc                                 <  1:4205823‑M2/20‑1 (MQ=255)
                   ttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGcc                                >  1:7129972‑M2/31‑51 (MQ=255)
                    taactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGccc                               >  1:3523906‑M2/30‑51 (MQ=255)
                       ctgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCg                            >  1:3647742‑M2/27‑51 (MQ=255)
                        tgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGt                           >  1:1388317‑M2/26‑51 (MQ=255)
                         gtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTc                          >  1:5916317‑M2/25‑51 (MQ=255)
                          tccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCa                         <  1:4061361‑M2/28‑1 (MQ=255)
                          tccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCa                         <  1:1733718‑M2/28‑1 (MQ=255)
                           ccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCAt                        >  1:5406299‑M2/23‑51 (MQ=255)
                            caactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCAtt                       <  1:1844236‑M2/30‑1 (MQ=255)
                            caactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCAtt                       >  1:3974838‑M2/22‑51 (MQ=255)
                              actttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCa                     <  1:1170126‑M2/32‑1 (MQ=255)
                              actttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCa                     >  1:4010440‑M2/20‑51 (MQ=255)
                               ctttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCAc                    <  1:3561792‑M2/33‑1 (MQ=255)
                               ctttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCAc                    >  1:2137194‑M2/19‑51 (MQ=255)
                                tttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACg                   >  1:5311071‑M2/18‑51 (MQ=255)
                                tttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACg                   >  1:1062406‑M2/18‑51 (MQ=255)
                                tttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACg                   >  1:6892001‑M2/18‑51 (MQ=255)
                                tttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACg                   <  1:7084798‑M2/34‑1 (MQ=255)
                                 ttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc                  >  1:7214788‑M2/17‑51 (MQ=255)
                                 ttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc                  >  1:4186067‑M2/17‑51 (MQ=255)
                                 ttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc                  >  1:6984316‑M2/17‑51 (MQ=255)
                                 ttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc                  >  1:6981364‑M2/17‑51 (MQ=255)
                                  tttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCa                 >  1:5006826‑M2/16‑51 (MQ=255)
                                  tttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCa                 >  1:6345027‑M2/16‑51 (MQ=255)
                                   ttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAg                <  1:6200528‑M2/37‑1 (MQ=255)
                                    tggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAgg               >  1:2551634‑M2/14‑51 (MQ=255)
                                    tggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAgg               >  1:6543861‑M2/14‑51 (MQ=255)
                                     ggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGc              <  1:7213490‑M2/39‑1 (MQ=255)
                                      gggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCa             <  1:4963069‑M2/40‑1 (MQ=255)
                                       ggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCAt            <  1:5137123‑M2/41‑1 (MQ=255)
                                       ggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCAt            >  1:247745‑M2/11‑51 (MQ=255)
                                         tcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAc          <  1:6732219‑M2/43‑1 (MQ=255)
                                         tcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAc          <  1:6929274‑M2/43‑1 (MQ=255)
                                         tcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAc          <  1:3758396‑M2/43‑1 (MQ=255)
                                         tcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAc          <  1:3423697‑M2/43‑1 (MQ=255)
                                          cagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAcc         <  1:328657‑M2/44‑1 (MQ=255)
                                           agtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCa        <  1:388415‑M2/45‑1 (MQ=255)
                                           agtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCa        <  1:1363297‑M2/45‑1 (MQ=255)
                                           agtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCa        >  1:3510193‑M2/7‑51 (MQ=255)
                                            gtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAg       >  1:4967034‑M2/6‑51 (MQ=255)
                                             tacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgc      <  1:6086031‑M2/47‑1 (MQ=255)
                                              acaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgcc     <  1:2919360‑M2/48‑1 (MQ=255)
                                              acaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgcc     <  1:6030640‑M2/48‑1 (MQ=255)
                                               caTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccg    >  1:2931343‑M2/3‑51 (MQ=255)
                                               caTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgcc     >  1:6620335‑M2/3‑50 (MQ=255)
                                                aTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgc   <  1:5865296‑M2/50‑1 (MQ=255)
                                                aTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgc   >  1:2589913‑M2/2‑51 (MQ=255)
                                                aTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgc   <  1:4183642‑M2/50‑1 (MQ=255)
                                                aTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgc   >  1:6748605‑M2/2‑51 (MQ=255)
                                                 tttGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgcc  >  1:6389553/1‑51 (MQ=255)
                                                 tttGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgcc  >  1:1261668/1‑51 (MQ=255)
                                                 |                                                  
TGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGCCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCC  >  REL606/4049531‑4049630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.