New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3894996 | NA (NA) | 113 (1.420) | 57/100 | 0.1 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 4049580 = | 0 (0.000) | coding (324/1242 nt) | yihS | predicted glucosamine isomerase |
Only 100 of 115 total aligned reads displayed.
TGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGCCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCC > REL606/4049531‑4049630 | agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt < 1:1052653‑M2/2‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt < 1:3832887‑M2/2‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt > 1:5518236‑M2/50‑51 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt < 1:301443‑M2/2‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt < 1:5676924‑M2/2‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt < 1:6859662‑M2/2‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt < 1:2654823‑M2/2‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt > 1:3832729‑M2/50‑51 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt > 1:1964020‑M2/50‑51 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt < 1:1926597‑M2/2‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacatt > 1:6696996‑M2/50‑51 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt > 1:6804608‑M2/49‑51 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt > 1:1679166‑M2/49‑51 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt < 1:7186443‑M2/3‑1 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt > 1:4290947‑M2/49‑51 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt < 1:7041658‑M2/3‑1 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt < 1:6960942‑M2/3‑1 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt < 1:2351153‑M2/3‑1 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt < 1:140833‑M2/3‑1 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTg > 1:6495200‑M2/48‑51 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacatttnc < 1:2215811‑M2/5‑3 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTgg < 1:2896005‑M2/5‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTgg < 1:6595506‑M2/5‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTgg < 1:5111707‑M2/5‑1 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGa < 1:5709405‑M2/6‑1 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGa < 1:4443521‑M2/6‑1 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGa < 1:2188635‑M2/6‑1 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGa > 1:5310376‑M2/46‑51 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAg < 1:4426930‑M2/7‑1 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAgg < 1:1617655‑M2/8‑1 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGc > 1:231131‑M2/43‑51 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGc > 1:4609051‑M2/43‑51 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGc < 1:2327003‑M2/9‑1 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCa < 1:1633142‑M2/10‑1 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCa > 1:433619‑M2/42‑51 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATcca < 1:606690‑M2/14‑1 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATcca < 1:6358601‑M2/14‑1 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATcca > 1:3105264‑M2/38‑51 (MQ=255) tcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATccac > 1:7089123‑M2/37‑51 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATccacc > 1:4378445‑M2/36‑51 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATccacc > 1:412258‑M2/36‑51 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATccacca > 1:5178473‑M2/35‑51 (MQ=255) tgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCcaccac < 1:3805186‑M2/18‑1 (MQ=255) tgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCcaccac < 1:5568537‑M2/18‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACg < 1:3348425‑M2/19‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACg > 1:6582732‑M2/33‑51 (MQ=255) gtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACg < 1:5926790‑M2/19‑1 (MQ=255) tttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGc > 1:5458094‑M2/32‑51 (MQ=255) tttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGc < 1:4205823‑M2/20‑1 (MQ=255) ttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGcc > 1:7129972‑M2/31‑51 (MQ=255) taactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGccc > 1:3523906‑M2/30‑51 (MQ=255) ctgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCg > 1:3647742‑M2/27‑51 (MQ=255) tgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGt > 1:1388317‑M2/26‑51 (MQ=255) gtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTc > 1:5916317‑M2/25‑51 (MQ=255) tccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCa < 1:4061361‑M2/28‑1 (MQ=255) tccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCa < 1:1733718‑M2/28‑1 (MQ=255) ccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCAt > 1:5406299‑M2/23‑51 (MQ=255) caactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCAtt < 1:1844236‑M2/30‑1 (MQ=255) caactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCAtt > 1:3974838‑M2/22‑51 (MQ=255) actttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCa < 1:1170126‑M2/32‑1 (MQ=255) actttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCa > 1:4010440‑M2/20‑51 (MQ=255) ctttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCAc < 1:3561792‑M2/33‑1 (MQ=255) ctttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCAc > 1:2137194‑M2/19‑51 (MQ=255) tttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACg > 1:5311071‑M2/18‑51 (MQ=255) tttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACg > 1:1062406‑M2/18‑51 (MQ=255) tttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACg > 1:6892001‑M2/18‑51 (MQ=255) tttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACg < 1:7084798‑M2/34‑1 (MQ=255) ttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc > 1:7214788‑M2/17‑51 (MQ=255) ttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc > 1:4186067‑M2/17‑51 (MQ=255) ttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc > 1:6984316‑M2/17‑51 (MQ=255) ttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc > 1:6981364‑M2/17‑51 (MQ=255) tttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCa > 1:5006826‑M2/16‑51 (MQ=255) tttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCa > 1:6345027‑M2/16‑51 (MQ=255) ttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAg < 1:6200528‑M2/37‑1 (MQ=255) tggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAgg > 1:2551634‑M2/14‑51 (MQ=255) tggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAgg > 1:6543861‑M2/14‑51 (MQ=255) ggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGc < 1:7213490‑M2/39‑1 (MQ=255) gggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCa < 1:4963069‑M2/40‑1 (MQ=255) ggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCAt < 1:5137123‑M2/41‑1 (MQ=255) ggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCAt > 1:247745‑M2/11‑51 (MQ=255) tcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAc < 1:6732219‑M2/43‑1 (MQ=255) tcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAc < 1:6929274‑M2/43‑1 (MQ=255) tcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAc < 1:3758396‑M2/43‑1 (MQ=255) tcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAc < 1:3423697‑M2/43‑1 (MQ=255) cagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAcc < 1:328657‑M2/44‑1 (MQ=255) agtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCa < 1:388415‑M2/45‑1 (MQ=255) agtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCa < 1:1363297‑M2/45‑1 (MQ=255) agtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCa > 1:3510193‑M2/7‑51 (MQ=255) gtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAg > 1:4967034‑M2/6‑51 (MQ=255) tacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgc < 1:6086031‑M2/47‑1 (MQ=255) acaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgcc < 1:2919360‑M2/48‑1 (MQ=255) acaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgcc < 1:6030640‑M2/48‑1 (MQ=255) caTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccg > 1:2931343‑M2/3‑51 (MQ=255) caTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgcc > 1:6620335‑M2/3‑50 (MQ=255) aTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgc < 1:5865296‑M2/50‑1 (MQ=255) aTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgc > 1:2589913‑M2/2‑51 (MQ=255) aTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgc < 1:4183642‑M2/50‑1 (MQ=255) aTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgc > 1:6748605‑M2/2‑51 (MQ=255) tttGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgcc > 1:6389553/1‑51 (MQ=255) tttGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgcc > 1:1261668/1‑51 (MQ=255) | TGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGCCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCC > REL606/4049531‑4049630 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |