New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3697156 = | NA (NA) | 125 (1.570) | 64/100 | 0.0 | NA | coding (280/4134 nt) | rhsA | rhsA element core protein RshA |
? | REL606 | 3893553 = | NA (NA) | intergenic (+8/‑48) | kup/insJ‑5 | potassium transporter/IS150 hypothetical protein |
GCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA > REL606/3893503‑3893601 | gCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGAc > 1:4088478/1‑51 (MQ=255) cAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTg > 1:1909281/1‑51 (MQ=255) cAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTg > 1:4158026/1‑51 (MQ=255) cAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTg < 1:6098321/51‑1 (MQ=255) aaaCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGt > 1:2910859/1‑51 (MQ=255) aaaCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGt > 1:2460827/1‑51 (MQ=255) aaCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTa < 1:6047626/51‑1 (MQ=255) aaCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTa < 1:335119/51‑1 (MQ=255) cAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACt < 1:5054221/51‑1 (MQ=255) cAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACt > 1:4342993/1‑51 (MQ=255) aGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTg > 1:1665938/1‑51 (MQ=255) aGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTg < 1:6156140/51‑1 (MQ=255) gggTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGc < 1:501795/51‑1 (MQ=255) ggTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCa < 1:836163/51‑1 (MQ=255) ggTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCa < 1:5116198/51‑1 (MQ=255) ggTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCa < 1:1353539/51‑1 (MQ=255) ttATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCAcc > 1:3637117/1‑51 (MQ=255) tATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCAccc < 1:1948045/51‑1 (MQ=255) tATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCAccc > 1:1094520/1‑51 (MQ=255) tATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCAccc > 1:548716/1‑51 (MQ=255) aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCa < 1:6105604/51‑1 (MQ=255) aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCa < 1:1284392/51‑1 (MQ=255) aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCa < 1:3417591/51‑1 (MQ=255) aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCa < 1:6282076/51‑1 (MQ=255) aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCa < 1:5056195/51‑1 (MQ=255) gAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAttt > 1:4864559/1‑51 (MQ=255) gAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAttt < 1:2230028/51‑1 (MQ=255) gAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAttt > 1:6897465/1‑51 (MQ=255) gAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAttt > 1:757620/1‑51 (MQ=255) aaCTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAtttt < 1:1903328/51‑1 (MQ=255) aaCTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAtttt > 1:3074057/1‑51 (MQ=255) aaCTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAtttt < 1:6118390/51‑1 (MQ=255) aaCTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAtttt < 1:2056706/51‑1 (MQ=255) aaCTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAtttt < 1:5347137/51‑1 (MQ=255) aCTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttg > 1:1376531/1‑51 (MQ=255) aCTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttg > 1:6175840/1‑51 (MQ=255) cTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttgt < 1:5888390/51‑1 (MQ=255) cTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttgt > 1:7051758/1‑51 (MQ=255) tGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGc < 1:7119390/39‑1 (MQ=255) tGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttgtt > 1:1778447/1‑51 (MQ=255) gggTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttgttg < 1:6701132/51‑1 (MQ=255) ggTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTgg < 1:2822161/51‑1 (MQ=255) ggTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTgg < 1:5518233/51‑1 (MQ=255) gTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGa < 1:492259/51‑1 (MQ=255) gTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGa < 1:1318754/51‑1 (MQ=255) tACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGAc > 1:1708229/1‑51 (MQ=255) aCTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACg > 1:868518/1‑51 (MQ=255) cTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGa > 1:5062319/1‑51 (MQ=255) cTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGa > 1:4785886/1‑51 (MQ=255) tCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGAt > 1:2585658/1‑51 (MQ=255) tCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGAt < 1:3706217/51‑1 (MQ=255) cAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATg < 1:1112617/51‑1 (MQ=255) cAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATg > 1:6489116/1‑51 (MQ=255) cAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATg < 1:6934025/51‑1 (MQ=255) aGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGa < 1:5068275/51‑1 (MQ=255) aGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGa > 1:5373033/1‑51 (MQ=255) ggTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa < 1:1196949/51‑1 (MQ=255) ggTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa < 1:5870255/51‑1 (MQ=255) ggTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa < 1:73816/51‑1 (MQ=255) gTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:6232133/51‑1 (MQ=255) tCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:1611691/1‑51 (MQ=255) tCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:3402796/51‑1 (MQ=255) tCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:7241292/1‑51 (MQ=255) tCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:4764188/1‑51 (MQ=255) tCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:3884355/1‑51 (MQ=255) tgAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:4644043/50‑1 (MQ=255) cGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:1657444/51‑1 (MQ=255) cGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:5284079/51‑1 (MQ=255) gAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATgg < 1:352128/51‑1 (MQ=255) aaaTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGa > 1:307292/1‑51 (MQ=255) aaTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa < 1:2194596/51‑1 (MQ=255) aTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt > 1:4350688/1‑51 (MQ=255) aTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt > 1:5283302/1‑51 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:2203008/51‑1 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:5499956/51‑1 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:2063118/51‑1 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:2270214/51‑1 (MQ=255) cTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAg > 1:4635512/1‑51 (MQ=255) aaCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:2925144/48‑1 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc > 1:4461796/1‑51 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc < 1:7007078/51‑1 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc > 1:4292986/1‑51 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc < 1:7191698/51‑1 (MQ=255) cGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:6720716/1‑51 (MQ=255) cGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:6687293/1‑51 (MQ=255) cGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:6529167/1‑51 (MQ=255) gCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt < 1:5765465/51‑1 (MQ=255) ccAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa > 1:4956105/1‑51 (MQ=40) ccAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa > 1:4020073/1‑51 (MQ=40) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa < 1:894067/51‑1 (MQ=38) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa > 1:5837419/1‑51 (MQ=38) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa < 1:5529550/51‑1 (MQ=38) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat > 1:6644406/1‑51 (MQ=35) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat < 1:776138/51‑1 (MQ=35) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat < 1:2664828/51‑1 (MQ=35) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat < 1:2958245/51‑1 (MQ=35) gACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata < 1:5119266/51‑1 (MQ=33) gACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata < 1:2816290/51‑1 (MQ=33) | GCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA > REL606/3893503‑3893601 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |