| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2775877 | NA (NA) | 72 (0.900) | 53/100 | 0.2 | 100% | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3048489 = | 0 (0.000) | intergenic (‑318/+37) | yghK/glcB | glycolate transporter/malate synthase | |||||
CTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTT > REL606/3048441‑3048539 | tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaccc > 1:4701703‑M2/49‑51 (MQ=255)tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaccc > 1:842703‑M2/49‑51 (MQ=255)tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaccc > 1:3251594‑M2/49‑51 (MQ=255)tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaccc > 1:2768886‑M2/49‑51 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGAc > 1:3932758‑M2/46‑51 (MQ=255) aggggctattccatttcatcgtccaacaaaatgggagcagtacaCCCGACa > 1:3929755‑M2/45‑51 (MQ=255) gggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAAt > 1:6280303‑M2/43‑51 (MQ=255) ggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATa > 1:6956301‑M2/42‑51 (MQ=255) ggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATa > 1:4903894‑M2/42‑51 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATaa > 1:1161465‑M2/41‑51 (MQ=255) ctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATaaa < 1:5837434‑M2/12‑1 (MQ=255) ctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATaaa < 1:6104952‑M2/12‑1 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATaaaa > 1:5063446‑M2/39‑51 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATaaaa > 1:6001012‑M2/39‑51 (MQ=255) attccatttcatcgtccaacaaaatgggtgcagtacaCCCGAc < 1:2395206‑M2/6‑1 (MQ=255) attccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAAc > 1:2909754‑M2/38‑51 (MQ=255) ttccatttcatcgtccaaaaaaatgggtgcagtaccCCCGACAATAAAAc < 1:212517‑M2/14‑1 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACtt < 1:6083710‑M2/16‑1 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACtt > 1:2062578‑M2/36‑51 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACtt > 1:4317614‑M2/36‑51 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGc < 1:3532889‑M2/18‑1 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGcc > 1:4541369‑M2/33‑51 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCg > 1:5199827‑M2/32‑51 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCg > 1:2298240‑M2/32‑51 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCg < 1:5832546‑M2/20‑1 (MQ=255) tttcatcgtccaacaaaatgggcgcagtacaCCCGACAATAAAACTTGCCg > 1:5669652‑M2/32‑51 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCgg > 1:2429026‑M2/31‑51 (MQ=255) tcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCggg > 1:2620182‑M2/30‑51 (MQ=255) tcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCggg < 1:5160819‑M2/22‑1 (MQ=255) atcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGc > 1:276954‑M2/28‑51 (MQ=255) atcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGc > 1:6350574‑M2/28‑51 (MQ=255) tcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCt > 1:1382411‑M2/27‑51 (MQ=255) cgtccaacaaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCtt < 1:5429444‑M2/26‑1 (MQ=255) cgtccaacaaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCtt < 1:3678147‑M2/26‑1 (MQ=255) cgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCtt > 1:7142849‑M2/26‑51 (MQ=255) gtccaacaaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCttt < 1:2307379‑M2/27‑1 (MQ=255) gtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCttt > 1:3887979‑M2/25‑51 (MQ=255) tccaacaaaatgggtgccgtacaCCCGACAATAAAACTTGCCGGGGCtttt < 1:5846656‑M2/28‑1 (MQ=255) tccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCtttt > 1:558104‑M2/24‑51 (MQ=255) ccaacaaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCttttt < 1:4777443‑M2/29‑1 (MQ=255) ccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCttttt > 1:4371418‑M2/23‑51 (MQ=255) ccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCttttt < 1:5735777‑M2/29‑1 (MQ=255) caacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCtttttt > 1:2267690‑M2/22‑51 (MQ=255) caacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCtttttt > 1:5152649‑M2/22‑51 (MQ=255) aacaaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCtttttt < 1:2746079‑M2/30‑1 (MQ=255) aacaaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCtttt < 1:1727449‑M2/28‑1 (MQ=255) aacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTg > 1:3511907‑M2/21‑51 (MQ=255) caaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCTTTTTTGAc < 1:3330591‑M2/33‑1 (MQ=255) caaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGAc > 1:6992486‑M2/19‑51 (MQ=255) aaaatgggtgcagtcccCCCGACAATAAAACTTGCCGGGGCTTTTTTGACg < 1:2287748‑M2/34‑1 (MQ=255) aaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCTTTTTTGACg < 1:5626630‑M2/34‑1 (MQ=255) aaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACg > 1:7274781‑M2/18‑51 (MQ=255) aaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACg < 1:5661440‑M2/34‑1 (MQ=255) aatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCt < 1:2430649‑M2/36‑1 (MQ=255) atgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTa < 1:4471812‑M2/37‑1 (MQ=255) atgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTa > 1:1548756‑M2/15‑51 (MQ=255) tgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTAt < 1:4433391‑M2/38‑1 (MQ=255) tgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTAt > 1:3484880‑M2/14‑51 (MQ=255) gggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTAtt < 1:5800658‑M2/39‑1 (MQ=255) gtgcagtaccCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTaa < 1:1315958‑M2/41‑1 (MQ=255) gtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTaa > 1:6956794‑M2/11‑51 (MQ=255) gcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTa < 1:3537074‑M2/40‑1 (MQ=255) cagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGa > 1:3848410‑M2/8‑51 (MQ=255) cagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGa < 1:820641‑M2/44‑1 (MQ=255) agtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGAc > 1:1313882‑M2/7‑51 (MQ=255) agtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGAc > 1:4031875‑M2/7‑51 (MQ=255) tacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACtt > 1:3667487‑M2/5‑51 (MQ=255) tacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACtt > 1:2733626‑M2/5‑51 (MQ=255) acaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACttt < 1:4094056‑M2/48‑1 (MQ=255) acaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACttt < 1:5463643‑M2/48‑1 (MQ=255) caCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTAtt > 1:5125880‑M2/3‑41 (MQ=255) aCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCt > 1:93190‑M2/2‑51 (MQ=255) cccGACAATAAAACTTGCCGGGGCTTTTTTGAc < 1:1135122/33‑1 (MQ=255) cccGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTa < 1:5228618/40‑1 (MQ=255) cccGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGa < 1:1039091/44‑1 (MQ=255) cccGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGActttctt < 1:4487904/51‑1 (MQ=255) cccGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGActttctt < 1:5398193/51‑1 (MQ=255) cccGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGActt < 1:2069321/47‑1 (MQ=255) cccGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGAct < 1:7205164/46‑1 (MQ=255) | CTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTT > REL606/3048441‑3048539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |