| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2774435 = | NA (NA) | 114 (1.430) | 63/100 | 0.0 | 99.1% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 2999596 | 1 (0.010) | coding (33/2847 nt) | flu | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter | |||||
Only 100 of 116 total aligned reads displayed.
CTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGGTATGGAATCACATTACGGGCACCCTGGTGGTGGCTTCCGAACTGGCCCG > REL606/2999546‑2999646 | ctctGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTg > 1:3293208/1‑51 (MQ=255) tctGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGt < 1:3984950‑M2/51‑2 (MQ=255) tctGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGt < 1:1327304‑M2/51‑2 (MQ=255) ctGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtg > 1:2745915‑M2/1‑49 (MQ=255) ctGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtg < 1:4353602‑M2/51‑3 (MQ=255) ctGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtg < 1:5120844‑M2/51‑3 (MQ=255) tGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgt > 1:4110433‑M2/1‑48 (MQ=255) tGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgt > 1:7001693‑M2/1‑48 (MQ=255) tGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgt > 1:472890‑M2/1‑48 (MQ=255) gTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgta < 1:6508689‑M2/51‑5 (MQ=255) tAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtac < 1:7031500‑M2/51‑6 (MQ=255) tAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtac < 1:2917871‑M2/51‑6 (MQ=255) aaGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtact > 1:1357308‑M2/1‑45 (MQ=255) aGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactg > 1:5381895‑M2/1‑44 (MQ=255) aGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactg < 1:6468427‑M2/51‑8 (MQ=255) aGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactg > 1:224477‑M2/1‑44 (MQ=255) aGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactg < 1:1990212‑M2/51‑8 (MQ=255) aGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactg > 1:5361350‑M2/1‑44 (MQ=255) ggAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactga > 1:1681788‑M2/1‑43 (MQ=255) ggAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactga < 1:4160468‑M2/51‑9 (MQ=255) gAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgac < 1:4883261‑M2/51‑10 (MQ=255) gAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgac > 1:4583524‑M2/1‑42 (MQ=255) gAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgac > 1:5744886‑M2/1‑42 (MQ=255) aaaaGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgacc < 1:5713981‑M2/51‑11 (MQ=255) aaaaGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgacc > 1:5517954‑M2/1‑41 (MQ=255) aaaaGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgacc < 1:3255554‑M2/51‑11 (MQ=255) aaaaGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgacc > 1:1265886‑M2/1‑41 (MQ=255) aaaGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccc < 1:4693057‑M2/51‑12 (MQ=255) aaGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgacccc > 1:4481938‑M2/1‑39 (MQ=255) aaGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgacccc > 1:3453857‑M2/1‑39 (MQ=255) aaGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgacccc < 1:4364363‑M2/51‑13 (MQ=255) aGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgacccca < 1:2934021‑M2/51‑14 (MQ=255) gCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaa < 1:4818441‑M2/51‑15 (MQ=255) tgatgaAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaa < 1:2569071‑M2/51‑17 (MQ=255) gatgaAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaa > 1:1494453‑M2/1‑34 (MQ=255) gatgaAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaa > 1:4511749‑M2/1‑34 (MQ=255) gatgaAACGACATCTGAACACCAGCTACAGGCTGGTATGGAATCACATTAc < 1:4306930/51‑1 (MQ=255) atgaAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaag > 1:2959854‑M2/1‑33 (MQ=255) tgaAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagt < 1:4815065‑M2/51‑20 (MQ=255) gaAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagtt < 1:5537683‑M2/51‑21 (MQ=255) gaAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagtt > 1:4987976‑M2/1‑31 (MQ=255) gaAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagt > 1:4610180‑M2/1‑31 (MQ=255) aaaCGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttg < 1:4116165‑M2/51‑22 (MQ=255) aaCGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttgg > 1:1235025‑M2/1‑29 (MQ=255) gACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggaca < 1:3777419‑M2/51‑26 (MQ=255) gACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggaca < 1:4910417‑M2/51‑26 (MQ=255) aCATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacag > 1:1604836‑M2/1‑25 (MQ=255) aTCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagtt < 1:4920598‑M2/51‑29 (MQ=255) aTCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagtt > 1:7276819‑M2/1‑23 (MQ=255) aTCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagtt > 1:7049479‑M2/1‑23 (MQ=255) tCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagtta > 1:733470‑M2/1‑22 (MQ=255) tCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagtta > 1:2548489‑M2/1‑22 (MQ=255) cTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaa > 1:6334606‑M2/1‑21 (MQ=255) tGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaa < 1:6062783‑M2/51‑32 (MQ=255) aaCACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaaca > 1:5596074‑M2/1‑18 (MQ=255) acacCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacac < 1:5590728‑M2/51‑35 (MQ=255) cacCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacg > 1:2897412‑M2/1‑16 (MQ=255) acCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacga > 1:3915096‑M2/1‑15 (MQ=255) acCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacga > 1:7266522‑M2/1‑15 (MQ=255) acCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacga > 1:4921140‑M2/1‑15 (MQ=255) ccAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgag > 1:4281377‑M2/1‑14 (MQ=255) ccAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgag < 1:732384‑M2/51‑38 (MQ=255) ccAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgag > 1:3219643‑M2/1‑14 (MQ=255) ccAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgag < 1:2780310‑M2/51‑38 (MQ=255) cAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgagg > 1:129266‑M2/1‑13 (MQ=255) cAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgagg < 1:7267062‑M2/51‑39 (MQ=255) aGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggc < 1:5544102‑M2/51‑40 (MQ=255) aGCTACAGGCCGtgtactgaccccaaaaagttggacagttaaacacgaggc < 1:5838777‑M2/51‑40 (MQ=255) gCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggca > 1:623146‑M2/1‑11 (MQ=255) cTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcat < 1:2360939‑M2/51‑42 (MQ=255) cTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcat < 1:5673182‑M2/51‑42 (MQ=255) cTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcat < 1:2161566‑M2/51‑42 (MQ=255) tACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcata > 1:4349614‑M2/1‑9 (MQ=255) tACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcata > 1:2337523‑M2/1‑9 (MQ=255) aCAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatat < 1:2938200‑M2/51‑44 (MQ=255) aCAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatat < 1:1568629‑M2/51‑44 (MQ=255) cAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata < 1:6836736‑M2/51‑45 (MQ=255) aGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatag < 1:943193‑M2/51‑46 (MQ=255) aGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatag > 1:5190094‑M2/1‑6 (MQ=255) ggCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg > 1:1720027‑M2/1‑5 (MQ=255) gCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggt < 1:5341109‑M2/51‑48 (MQ=255) cTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtc > 1:2620500‑M2/1‑3 (MQ=255) cTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtc < 1:6212492‑M2/51‑49 (MQ=255) cTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata < 1:37453‑M2/47‑45 (MQ=255) tgtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtct > 1:4450466‑M2/1‑2 (MQ=255) tgtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtct < 1:6405176‑M2/51‑50 (MQ=255) tgtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtct > 1:5712543‑M2/1‑2 (MQ=255) tgtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtct < 1:1883312‑M2/51‑50 (MQ=255) tgtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtct > 1:6586867‑M2/1‑2 (MQ=255) tgtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtct > 1:5569019‑M2/1‑2 (MQ=255) tgtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtct > 1:3126273‑M2/1‑2 (MQ=255) gtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctg > 1:2980916‑M2/1‑1 (MQ=255) gtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctg < 1:2773344‑M2/51‑51 (MQ=255) gtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctg < 1:2644841‑M2/51‑51 (MQ=255) gtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctg < 1:5725148‑M2/51‑51 (MQ=255) gtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctg > 1:3174844‑M2/1‑1 (MQ=255) gtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctg > 1:3607686‑M2/1‑1 (MQ=255) gtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctg < 1:1614343‑M2/51‑51 (MQ=255) gtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctg > 1:1441605‑M2/1‑1 (MQ=255) gtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctg > 1:6835020‑M2/1‑1 (MQ=255) | CTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGGTATGGAATCACATTACGGGCACCCTGGTGGTGGCTTCCGAACTGGCCCG > REL606/2999546‑2999646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |