New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 26557040 (0.000)65 (0.830) 42/98 0.7 100% intergenic (‑123/+7) clpB/yfiH protein disaggregation chaperone/hypothetical protein
?REL606 3651091 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 236 total aligned reads displayed.

TCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG  >  REL606/3651041‑3651140
                                                  |                                                 
tCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                   <  1:4236656/51‑1 (MQ=255)
 cTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATg                                                  >  1:6540938/1‑51 (MQ=255)
 cTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATg                                                  >  1:691804/1‑51 (MQ=255)
 cTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATg                                                  >  1:5345069/1‑51 (MQ=255)
  tatcgcgcagctgtaagcggatatccgcaggcattttccagccggggcTGt                                                 >  1:2937917‑M1/49‑51 (MQ=255)
  tatcgcgcagctgtaagcggatatccgcaggcattttccagccggggcTGt                                                 <  1:5419565‑M1/3‑1 (MQ=255)
  tataTTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGt                                                 >  1:709825/1‑51 (MQ=255)
   atcgcgcagctgtaagcggatatccgcaggcattttccagccggggcTGTa                                                >  1:6188039‑M1/48‑51 (MQ=255)
   atcgcgcagctgtaagcggatatccgcaggcattttccagccggggcTGTa                                                >  1:6095175‑M1/48‑51 (MQ=255)
   atatTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTa                                                <  1:4482765/51‑1 (MQ=255)
   atatTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTa                                                >  1:4541695/1‑51 (MQ=255)
    tatTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTAc                                               >  1:1893971/1‑51 (MQ=255)
    tatTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTAc                                               <  1:4702500/51‑1 (MQ=255)
    tatTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTAc                                               >  1:3952416/1‑51 (MQ=255)
     atTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt                                              >  1:1307992/1‑51 (MQ=255)
     atTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt                                              >  1:2022358/1‑51 (MQ=255)
      tttCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTg                                             >  1:6591212/1‑51 (MQ=255)
      tttCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTg                                             >  1:1991556/1‑51 (MQ=255)
      gcgcagctgtaagcggatatccgcaggcattttccagccggggcTGTACTg                                             >  1:4609225‑M1/45‑51 (MQ=255)
       ttCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGc                                            >  1:1700896/1‑51 (MQ=255)
       cgcagctgtaagcggatatccgcaggcattttccagccggggcTGTACTGc                                            >  1:5132735‑M1/44‑51 (MQ=255)
       cgcagctgtaagcggatatccgcaggcattttccagccggggcTGTACTGc                                            <  1:4654844‑M1/8‑1 (MQ=255)
        tCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCa                                           <  1:6047510/51‑1 (MQ=255)
         cTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCAc                                          >  1:5202918/1‑51 (MQ=255)
           gctgtaagcggatatccgcaggcattttccagccggggcTGTACTGCAccc                                        >  1:677876‑M1/40‑51 (MQ=255)
           gctgtaagcggatatccgcaggcattttccagccggggcTGTACTGCAcc                                         <  1:2533307‑M1/11‑1 (MQ=255)
            ctgtaagcggatatccgcaggcattttccagccggggcTGTACTGCACCCa                                       >  1:6815700‑M1/39‑51 (MQ=255)
            ctgtaagcggatatccgcaggcattttccagccggggcTGTACTGCACCCa                                       >  1:4906595‑M1/39‑51 (MQ=255)
             tgtaagcggatatccgcaggcattttccagccggggcTGTACTGCACCCAt                                      >  1:390845‑M1/38‑51 (MQ=255)
             ggCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCAt                                      <  1:5742421/51‑1 (MQ=255)
             ggCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCAt                                      <  1:1206482/51‑1 (MQ=255)
              gtaagcggatatccgcaggcattttccagccggggcTGTACTGCACCCAtt                                     <  1:7182272‑M1/15‑1 (MQ=255)
               cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCAttt                                    <  1:3235034/51‑1 (MQ=255)
                aagcggatatccgcaggcattttccagccggggcTGTACTGCACCCAtttt                                   >  1:271976‑M1/35‑51 (MQ=255)
                aagcggatatccgcaggcattttccagccggggcTGTACTGCACCCAtttt                                   <  1:4983928‑M1/17‑1 (MQ=255)
                aagcagatatccgcaggcattttccagccggggcTGTACTGCACCCAtttt                                   >  1:5446230‑M1/35‑51 (MQ=255)
                aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCAtttt                                   >  1:583708/1‑51 (MQ=255)
                 ttCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTttg                                  <  1:4474261/51‑1 (MQ=255)
                  tCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTttgt                                 >  1:142195/1‑51 (MQ=255)
                  gcggatatccgcaggcattttccagccggggcTGTACTGCACCCATTttgt                                 >  1:375671‑M1/33‑51 (MQ=255)
                   cggatatccgcaggcattttccagccggggcTGTACTGCACCCATTttgtt                                <  1:1303860‑M1/20‑1 (MQ=255)
                   cccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTttgtt                                >  1:4976381/1‑51 (MQ=255)
                    ggatatccgcaggcattttccagccggggcTGTACTGCACCCATTttgttg                               <  1:897076‑M1/21‑1 (MQ=255)
                    ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTttgttg                               <  1:4989963/51‑1 (MQ=255)
                    ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTttgttg                               >  1:4295359/1‑51 (MQ=255)
                      atatccgcaggcattttccagccggggcTGTACTGCACCCATTTTGTTGGa                             >  1:2875717‑M1/29‑51 (MQ=255)
                      aGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGa                             <  1:2182586/51‑1 (MQ=255)
                       tatccgcaggcattttccagccggggcTGTACTGCACCCATTTTGTTGGAc                            <  1:824209‑M1/24‑1 (MQ=255)
                        cctcctGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACg                           >  1:5615836/1‑51 (MQ=255)
                        atccgcaggcattttccagccggggcTGTACTGCACCCATTTTGTTGGACg                           >  1:4102879‑M1/27‑51 (MQ=255)
                        atccgcaggcattttccagccggggcTGTACTGCACCCATTTTGTTGGACg                           <  1:2965767‑M1/25‑1 (MQ=255)
                        atccgcaggcattttccagccggggcTGTACTGCACCCATTTTGTTGGACg                           >  1:6511669‑M1/27‑51 (MQ=255)
                        atccgcaggcattttccagccggggcTGTACTGCACCCATTTTGTTGGACg                           >  1:1572235‑M1/27‑51 (MQ=255)
                         ctcctGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGa                          >  1:6217511/1‑51 (MQ=255)
                           cgcaggcattttccagccggggcTGTACTGCACCCATTTTGTTGGACGATg                        >  1:2513872‑M1/24‑51 (MQ=255)
                            gcaggcattttccagccggggcTGTACTGCACCCATTTTGTTGGACGATGa                       <  1:3278723‑M1/29‑1 (MQ=255)
                             caggcattttccagccggggcTGTACTGCACCCATTTTGTTGGACGATGaa                      <  1:4625507‑M1/30‑1 (MQ=255)
                             caggcattttccagccggggcTGTACTGCACCCATTTTGTTGGACGATGaa                      <  1:138504‑M1/30‑1 (MQ=255)
                              aggcattttccagccggggcTGTACTGCACCCATTTTGTTGGACGATGaaa                     >  1:147638‑M1/21‑51 (MQ=255)
                              aggcattttccagccggggcTGTACTGCACCCATTTTGTTGGACGATGaaa                     <  1:5920162‑M1/31‑1 (MQ=255)
                               ggcattttccagccggggcTGTACTGCACCCATTTTGTTGGACGATGAAAt                    <  1:2317060‑M1/32‑1 (MQ=255)
                                  tGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGa                 <  1:3612953/51‑1 (MQ=255)
                                  attttccagccggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGa                 <  1:5505767‑M1/35‑1 (MQ=255)
                                   ttttccagccggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa                >  1:6285992‑M1/16‑51 (MQ=255)
                                   ttttccagccggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa                >  1:34266‑M1/16‑51 (MQ=255)
                                   ttttccagccggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa                <  1:440646‑M1/36‑1 (MQ=255)
                                    tttccagccggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt               <  1:3001960‑M1/37‑1 (MQ=255)
                                    tttccagccggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt               >  1:2101698‑M1/15‑51 (MQ=255)
                                     tttCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt               <  1:5750029/50‑1 (MQ=255)
                                     tttCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa              >  1:2127690/1‑51 (MQ=255)
                                     tttCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa              <  1:6418277/51‑1 (MQ=255)
                                      ttCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAg             >  1:633975/1‑51 (MQ=255)
                                      tccagccggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAg             <  1:3470380‑M1/39‑1 (MQ=255)
                                       tCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc            >  1:1039880/1‑51 (MQ=255)
                                       tCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc            <  1:5945160/51‑1 (MQ=255)
                                         agccggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc          <  1:2822224‑M1/42‑1 (MQ=255)
                                          gccggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc         <  1:1452997‑M1/43‑1 (MQ=255)
                                           ccggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt        <  1:5054625‑M1/44‑1 (MQ=255)
                                           ccggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt        >  1:4166461‑M1/8‑51 (MQ=255)
                                           ccggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt        >  1:3763087‑M1/8‑51 (MQ=255)
                                            cggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa       <  1:3825851‑M1/45‑1 (MQ=255)
                                            cggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa       <  1:3692773‑M1/45‑1 (MQ=255)
                                            cGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa       <  1:1543458/51‑1 (MQ=255)
                                             ggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa      >  1:3488912‑M1/6‑51 (MQ=255)
                                             ggggcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa      >  1:3708384‑M1/6‑51 (MQ=255)
                                             gAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa      <  1:3192561/51‑1 (MQ=40)
                                               gTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata    >  1:6719287/1‑51 (MQ=35)
                                               gTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata    <  1:487547/51‑1 (MQ=35)
                                               gTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata    <  1:1869083/51‑1 (MQ=35)
                                                tATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat   >  1:2247399/1‑51 (MQ=33)
                                                 cTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATg  <  1:374474‑M1/50‑1 (MQ=255)
                                                 cTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATg  <  1:3405482‑M1/50‑1 (MQ=255)
                                                 cTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATg  >  1:1763208‑M1/2‑51 (MQ=255)
                                                 cTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATg  >  1:1518868‑M1/2‑51 (MQ=255)
                                                 cTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATg  <  1:5882123‑M1/50‑1 (MQ=255)
                                                 cTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATg  >  1:5794715‑M1/2‑51 (MQ=255)
                                                 cTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATg  >  1:2489831‑M1/2‑51 (MQ=255)
                                                 cTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATg  >  1:1176783‑M1/2‑51 (MQ=255)
                                                 cTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATg  <  1:111707‑M1/50‑1 (MQ=255)
                                                 cTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATg  >  1:1614740‑M1/2‑51 (MQ=255)
                                                  |                                                 
TCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG  >  REL606/3651041‑3651140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.