Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | REL606 | 2,034,358 | Δ19,491 bp | [insB‑14]–[wcaJ] | 20 genes [insB‑14], insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, [wcaJ] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 2034358–2035096 | 2053848 | 18753–19491 | 65 [0] | [0] 62 | [insB‑14]–[wcaJ] | [insB‑14],insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,[wcaJ] |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2034357 | 0 (0.000) | 61 (0.770) | 40/100 | 1.0 | 100% | noncoding (737/768 nt) | IS1 | repeat region |
? | REL606 | 2053849 = | 0 (0.000) | coding (823/1395 nt) | wcaJ | predicted UDP‑glucose lipid carrier transferase |
CGGGGAGATCAGCAGCAGGATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCA > REL606/2053799‑2053899 | gaagtctaacaaatatccggtaatgactccaacttattgatagtgttttag < 1:1965365‑M2/1‑1 (MQ=255) gaagtctaacaaatatccggtaatgactccaacttattgatagtgttttag < 1:5981553‑M2/1‑1 (MQ=255) agtctaacaaatatccggtaatgactccaacttattgatagtgttttaGtt > 1:1851266‑M2/49‑51 (MQ=255) agtctaacaaatatccggtaatgactccaacttattgatagtgttttaGtt > 1:1098574‑M2/49‑51 (MQ=255) agtctaacaaatatccggtaatgactccaacttattgatagtgttttaGtt > 1:6562462‑M2/49‑51 (MQ=255) gtctaacaaatatccggtaatgactccaacttattgatagtgttttaGttt < 1:1358579‑M2/4‑1 (MQ=255) tctaacaaatatccggtaatggctccaacttattgatagtgttttaGTTTg < 1:5100395‑M2/5‑1 (MQ=255) tctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTg < 1:2796552‑M2/5‑1 (MQ=255) tctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTg > 1:1997273‑M2/47‑51 (MQ=255) tctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTg < 1:1109620‑M2/5‑1 (MQ=255) taacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAg > 1:498536‑M2/45‑51 (MQ=255) taacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAg > 1:5862817‑M2/45‑51 (MQ=255) taacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAg > 1:6515830‑M2/45‑51 (MQ=255) aacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGc < 1:4096229‑M2/8‑1 (MQ=255) aacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGc < 1:1146203‑M2/8‑1 (MQ=255) caaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAg < 1:5664032‑M2/10‑1 (MQ=255) aaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAgg < 1:6683826‑M2/11‑1 (MQ=255) aaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAgg > 1:3812820‑M2/41‑51 (MQ=255) aaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAgg < 1:7252045‑M2/11‑1 (MQ=255) aatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGc < 1:3634878‑M2/12‑1 (MQ=255) aatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGc < 1:6493317‑M2/12‑1 (MQ=255) tatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCgg < 1:5748839‑M2/14‑1 (MQ=255) atccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGt < 1:5149768‑M2/15‑1 (MQ=255) atccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGt < 1:151241‑M2/15‑1 (MQ=255) atccgataatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGt > 1:950745‑M2/37‑51 (MQ=255) tccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGtt > 1:360576‑M2/36‑51 (MQ=255) ccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTa > 1:4834784‑M2/35‑51 (MQ=255) cggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTaa < 1:3261418‑M2/18‑1 (MQ=255) cggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTaa < 1:3510288‑M2/18‑1 (MQ=255) gtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAAcc < 1:5396708‑M2/20‑1 (MQ=255) aatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAAcccc < 1:6497735‑M2/22‑1 (MQ=255) gactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGa > 1:3903622‑M2/27‑51 (MQ=255) ctccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGaaa < 1:4539638‑M2/27‑1 (MQ=255) ctccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGaaa < 1:5976097‑M2/27‑1 (MQ=255) ctccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGaaa < 1:112930‑M2/27‑1 (MQ=255) ctccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGaaa < 1:5211102‑M2/27‑1 (MQ=255) ccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAgc < 1:6593323‑M2/29‑1 (MQ=255) caacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAgcg < 1:1218219‑M2/30‑1 (MQ=255) aacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAgcgg < 1:291932‑M2/31‑1 (MQ=255) acttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAgcggc < 1:2768062‑M2/32‑1 (MQ=255) acttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAgcggc < 1:3081625‑M2/32‑1 (MQ=255) cttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGaa > 1:1277329‑M2/19‑44 (MQ=255) cttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAgcggcg > 1:5006328‑M2/19‑51 (MQ=255) ttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCgt > 1:6562101‑M2/18‑51 (MQ=255) tattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCgtg > 1:140396‑M2/17‑51 (MQ=255) tattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCgtg > 1:6500226‑M2/17‑51 (MQ=255) attgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAgc < 1:4803033‑M2/29‑1 (MQ=255) attgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCgtgt > 1:820640‑M2/16‑51 (MQ=255) attgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCgtgt > 1:7215888‑M2/16‑51 (MQ=255) attgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCgtgt < 1:1542110‑M2/36‑1 (MQ=255) tgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCa > 1:5298369‑M2/14‑51 (MQ=255) tgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCa > 1:1131321‑M2/14‑51 (MQ=255) gatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCAt < 1:5981692‑M2/39‑1 (MQ=255) atagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATa < 1:2786583‑M2/40‑1 (MQ=255) tagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATAc > 1:4358551‑M2/11‑51 (MQ=255) agtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACa < 1:6518118‑M2/42‑1 (MQ=255) gttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCg < 1:2913619‑M2/45‑1 (MQ=255) ttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCgg < 1:1777341‑M2/46‑1 (MQ=255) ttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCgg > 1:7055920‑M2/6‑51 (MQ=255) ttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCa < 1:4272671‑M2/48‑1 (MQ=255) aGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCAcc < 1:4194076‑M2/50‑1 (MQ=255) gTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGcacca < 1:3619584/51‑1 (MQ=255) | CGGGGAGATCAGCAGCAGGATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCA > REL606/2053799‑2053899 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |