New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3652533 | NA (NA) | 199 (2.500) | 78/100 | 0.0 | NA | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | = 3697156 | NA (NA) | coding (280/4134 nt) | rhsA | rhsA element core protein RshA |
ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGA > REL606/3652487‑3652583 | aCCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACt > 1:5599023/1‑51 (MQ=35) aCCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACt > 1:363232/1‑51 (MQ=35) aCCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACt < 1:3136162/51‑1 (MQ=35) ccTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACtt < 1:6948341/51‑1 (MQ=38) ccTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACtt > 1:1895241/1‑51 (MQ=38) ccTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACtt > 1:4427244/1‑51 (MQ=38) ccTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACtt < 1:6679009/51‑1 (MQ=38) cTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACttt < 1:2496635/51‑1 (MQ=40) cTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACttt > 1:1944380/1‑51 (MQ=40) tataTGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTg < 1:2088673/51‑1 (MQ=255) atatGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGa < 1:5451025/51‑1 (MQ=255) atatGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGa < 1:1917706/51‑1 (MQ=255) atatGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGa > 1:2471339/1‑51 (MQ=255) atGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAtt < 1:3452994/51‑1 (MQ=255) tGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAttt < 1:3880196/51‑1 (MQ=255) gCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTta < 1:2665326/51‑1 (MQ=255) gCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTta < 1:6949524/51‑1 (MQ=255) cTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTtata > 1:86623/1‑51 (MQ=255) cTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTtata > 1:6681204/1‑51 (MQ=255) cTCGTGTTTAACTGTCCAACTTTTTGGGGGCAGTACAAACTTTGATTtata > 1:1449003/1‑51 (MQ=255) tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAg > 1:1528866/1‑51 (MQ=255) tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCa < 1:211509/51‑1 (MQ=255) tttAACTGTGCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAgg < 1:1229226/51‑1 (MQ=255) tttAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAgg > 1:539704/1‑51 (MQ=255) tttAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAgg > 1:4709190/1‑51 (MQ=255) ttAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGt < 1:1354956/46‑1 (MQ=255) ttAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGt > 1:6228384/1‑51 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTg < 1:3759882/51‑1 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTg > 1:5795501/1‑51 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTgg > 1:6196596/1‑51 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTgg > 1:6892646/1‑51 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTggg > 1:4239113/1‑51 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTgggg < 1:5606119/51‑1 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTgggg < 1:1705504/51‑1 (MQ=255) tGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGc < 1:4847386/51‑1 (MQ=255) gTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCt < 1:2947147/51‑1 (MQ=255) gTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCt < 1:781552/51‑1 (MQ=255) tCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCtt < 1:1432166/51‑1 (MQ=255) ccAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCttt > 1:26653/1‑51 (MQ=255) cAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCtttt < 1:5288585/51‑1 (MQ=255) cAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCtttt > 1:3798786/1‑51 (MQ=255) cAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCtttt < 1:4815954/51‑1 (MQ=255) aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTtc < 1:4901984/51‑1 (MQ=255) aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTtc > 1:2200599/1‑51 (MQ=255) aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTtc > 1:4559184/1‑51 (MQ=255) aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTtc < 1:1806531/51‑1 (MQ=255) aCTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTtct > 1:5270898/1‑51 (MQ=255) aCTTTTGGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTtct < 1:2748658/51‑1 (MQ=255) cTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTtctc > 1:4899816/1‑51 (MQ=255) cTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTtctc < 1:5549763/51‑1 (MQ=255) tttttGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTctct > 1:4389400/1‑51 (MQ=255) ttttGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctg < 1:5169398/51‑1 (MQ=255) ttttGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctg < 1:6679129/51‑1 (MQ=255) tttGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgt > 1:637861/1‑51 (MQ=255) tttGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgt < 1:2829722/51‑1 (MQ=255) tttGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgt < 1:5157805/51‑1 (MQ=255) ttGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtc < 1:5025188/51‑1 (MQ=255) ttGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtc > 1:4182725/1‑51 (MQ=255) ttGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtc < 1:3378786/51‑1 (MQ=255) tGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtct > 1:216416/1‑51 (MQ=255) gggTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGc < 1:2729231/51‑1 (MQ=255) gTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCt > 1:681503/1‑51 (MQ=255) cAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCttt < 1:6344595/51‑1 (MQ=255) cAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCttt > 1:672035/1‑51 (MQ=255) cAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCttt < 1:1835712/51‑1 (MQ=255) aGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTc < 1:2761222/51‑1 (MQ=255) aGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTc < 1:7266351/51‑1 (MQ=255) aGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTc > 1:5527581/1‑51 (MQ=255) aGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTc < 1:5722381/51‑1 (MQ=255) gTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCg < 1:5275974/51‑1 (MQ=255) gTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCg < 1:4218338/51‑1 (MQ=255) tACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCgg > 1:1193064/1‑51 (MQ=255) aCAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGt < 1:6396654/51‑1 (MQ=255) aCAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGt < 1:2189284/51‑1 (MQ=255) cAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTg > 1:7268812/1‑51 (MQ=255) aaaCTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGa < 1:132991/51‑1 (MQ=255) aaaCTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGa > 1:952541/1‑51 (MQ=255) | ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGA > REL606/3652487‑3652583 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |