New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2655704 | 0 (0.000) | 65 (0.830) | 42/98 | 0.7 | 100% | intergenic (‑123/+7) | clpB/yfiH | protein disaggregation chaperone/hypothetical protein |
? | REL606 | 3651091 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region |
TGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAGGTTATATCAGCCAAATGAAACTTGCCATACGCCCGGTGG > REL606/2655654‑2655748 | tGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTc > 1:1436512/1‑51 (MQ=255) tGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTc > 1:4480595/1‑51 (MQ=255) gACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCt < 1:6090658‑M1/51‑2 (MQ=255) gACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCt > 1:46669‑M1/1‑50 (MQ=255) gACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCt < 1:6618248‑M1/51‑2 (MQ=255) gACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCt < 1:5038919‑M1/51‑2 (MQ=255) gACCAGATTAATGTGAAAAAAAAATCACGCGTACCGGATCGTCTTGATTCt < 1:1607992‑M1/51‑2 (MQ=255) aCCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtg < 1:4065448‑M1/51‑3 (MQ=255) aCCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCt < 1:5685549‑M1/50‑2 (MQ=255) ccAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgt > 1:4849916‑M1/1‑48 (MQ=255) cAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgta > 1:5442112‑M1/1‑47 (MQ=255) cAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgta > 1:2709074‑M1/1‑47 (MQ=255) aGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtac > 1:1001852‑M1/1‑46 (MQ=255) aGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtac < 1:3296590‑M1/51‑6 (MQ=255) gATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtact < 1:4350746‑M1/51‑7 (MQ=255) gATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtact < 1:1969621‑M1/51‑7 (MQ=255) aTTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactg < 1:6436277‑M1/51‑8 (MQ=255) aaTGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcac > 1:5120825‑M1/1‑41 (MQ=255) aTGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacc > 1:5882577‑M1/1‑40 (MQ=255) tgtgAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcaccc > 1:2938527‑M1/1‑39 (MQ=255) tgAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccat < 1:2679354‑M1/51‑15 (MQ=255) tgAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccat < 1:1037150‑M1/51‑15 (MQ=255) tgAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccat > 1:6653621‑M1/1‑37 (MQ=255) tgAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccat > 1:5562310‑M1/1‑37 (MQ=255) tgAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccat < 1:6659143‑M1/51‑15 (MQ=255) gaaaagaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccatt < 1:2677444‑M1/51‑16 (MQ=255) aaaagaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattt < 1:69338‑M1/51‑17 (MQ=255) aaaagaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattt > 1:4370214‑M1/1‑35 (MQ=255) aaaagaaaaCCCCGCGTACCGGATCGTCTTGATTCtgtactgcacccattt < 1:398233‑M1/51‑17 (MQ=255) aaagaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccatttt < 1:4592454‑M1/51‑18 (MQ=255) aaagaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccatttt < 1:4917069‑M1/51‑18 (MQ=255) aaagaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccatttt > 1:5641033‑M1/1‑34 (MQ=255) aaagaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccatttt > 1:2574079‑M1/1‑34 (MQ=255) aagaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttg > 1:3501670‑M1/1‑33 (MQ=255) agaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgt > 1:887331‑M1/1‑32 (MQ=255) agaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgt > 1:7225746‑M1/1‑32 (MQ=255) aaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttgg > 1:6308335‑M1/1‑29 (MQ=255) aTCACGCGTACCGGATCGTCTTGGTTCtgttctgcacccatttt > 1:2128553‑M1/1‑27 (MQ=255) aTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggac < 1:5662257‑M1/51‑25 (MQ=255) aTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggac < 1:2691389‑M1/51‑25 (MQ=255) aTCACGCGTACCGGATCGTCTTGATTCtgtactacacccattttgttggac < 1:3509908‑M1/51‑25 (MQ=255) cACGCGTACCGGATCGTCTTGATTCtgtactgcccccattttgttgg > 1:972110‑M1/1‑25 (MQ=255) cgcgTACCGGATCGTCTTGATTCtgtactgcacccattttgttggac < 1:1064968‑M1/47‑25 (MQ=255) gcgTACCGGATCGTTTTGATTCtgtactgcacccattttgttggacgatga > 1:306565‑M1/1‑22 (MQ=255) gcgTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatga < 1:1128656‑M1/51‑30 (MQ=255) gcgTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatga > 1:7013163‑M1/1‑22 (MQ=255) gcgTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatga < 1:5103279‑M1/51‑30 (MQ=255) gcgTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatga < 1:4893814‑M1/51‑30 (MQ=255) cgTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaa < 1:2455775‑M1/51‑31 (MQ=255) tACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaat < 1:5274268‑M1/51‑33 (MQ=255) tACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaat > 1:3075353‑M1/1‑19 (MQ=255) tACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaat > 1:2788494‑M1/1‑19 (MQ=255) ccGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatgg > 1:3853599‑M1/1‑17 (MQ=255) ccGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatgg > 1:4070984‑M1/1‑17 (MQ=255) cGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatgga > 1:1197017‑M1/1‑16 (MQ=255) cGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatgga < 1:1568064‑M1/51‑36 (MQ=255) cGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatgga > 1:1793552‑M1/1‑16 (MQ=255) gATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaat < 1:6023763‑M1/51‑38 (MQ=255) aTCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaata < 1:938369‑M1/51‑39 (MQ=255) tCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatag < 1:1907125‑M1/51‑40 (MQ=255) cGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagc < 1:990032‑M1/51‑41 (MQ=255) cGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagc > 1:4891942‑M1/1‑11 (MQ=255) cGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagc < 1:1701430‑M1/51‑41 (MQ=255) cGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagc > 1:2388584‑M1/1‑11 (MQ=255) tCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagccc < 1:759298‑M1/51‑43 (MQ=255) tCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagccc > 1:487435‑M1/1‑9 (MQ=255) tCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagccc > 1:90016‑M1/1‑9 (MQ=255) cTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccc < 1:5131838‑M1/51‑44 (MQ=255) cTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccc < 1:4050935‑M1/51‑44 (MQ=255) cTTGATTCtgtactgcacccattttgttggacgacgaaatggaatagcccc > 1:6143108‑M1/1‑8 (MQ=255) ttGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccct > 1:4741606‑M1/1‑7 (MQ=255) ttGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccct < 1:4846876‑M1/51‑45 (MQ=255) ttGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccct < 1:46611‑M1/51‑45 (MQ=255) | TGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAGGTTATATCAGCCAAATGAAACTTGCCATACGCCCGGTGG > REL606/2655654‑2655748 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |