New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2093027 =0 (0.000)71 (0.890) 49/100 0.4 100% coding (1534/3078 nt) yegO multidrug efflux system, subunit C
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

CGAGCAAAAGCGACTGCGTGGTTTTGGTCGCATGTTGGTAGCCCTGCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTG  >  REL606/2092981‑2093077
                                              |                                                  
cctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaaca                                                >  1:3045990‑M1/47‑51 (MQ=255)
 ctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaacaa                                               <  1:6688976‑M1/6‑1 (MQ=255)
  tatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAg                                              >  1:3946289‑M1/45‑51 (MQ=255)
  tatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAg                                              >  1:3527043‑M1/45‑51 (MQ=255)
  tatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAg                                              <  1:479301‑M1/7‑1 (MQ=255)
  tatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAg                                              <  1:1036753‑M1/7‑1 (MQ=255)
    tatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGc                                            <  1:6026705‑M1/9‑1 (MQ=255)
    tatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGc                                            >  1:2862550‑M1/43‑51 (MQ=255)
     atgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCt                                           >  1:1794800‑M1/42‑51 (MQ=255)
      tgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTa                                          >  1:6057047‑M1/41‑51 (MQ=255)
       gcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTAc                                         <  1:280332‑M1/12‑1 (MQ=255)
        cctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACg                                        >  1:6431039‑M1/39‑51 (MQ=255)
        cctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACg                                        >  1:452954‑M1/39‑51 (MQ=255)
         ctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACgg                                       >  1:656839‑M1/38‑51 (MQ=255)
         ctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACgg                                       <  1:4160081‑M1/14‑1 (MQ=255)
         ctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACgg                                       >  1:1465634‑M1/38‑51 (MQ=255)
            gtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCaa                                    <  1:6967630‑M1/17‑1 (MQ=255)
             tgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAg                                   >  1:6736476‑M1/34‑51 (MQ=255)
              gtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGt                                  <  1:1744192‑M1/19‑1 (MQ=255)
               tttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTc                                 >  1:5730539‑M1/32‑51 (MQ=255)
               tttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTc                                 >  1:1860681‑M1/32‑51 (MQ=255)
               tttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTc                                 <  1:1662391‑M1/20‑1 (MQ=255)
               tttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTc                                 <  1:2790278‑M1/20‑1 (MQ=255)
                ttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCa                                >  1:158701‑M1/31‑51 (MQ=255)
                ttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCa                                >  1:2254605‑M1/31‑51 (MQ=255)
                ttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCa                                <  1:4975742‑M1/21‑1 (MQ=255)
                ttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCa                                <  1:3322228‑M1/21‑1 (MQ=255)
                 taactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCAc                               >  1:2978150‑M1/30‑51 (MQ=255)
                  aactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACt                              >  1:2614239‑M1/29‑51 (MQ=255)
                   actgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTg                             >  1:1600181‑M1/28‑51 (MQ=255)
                   actgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTg                             <  1:2542387‑M1/24‑1 (MQ=255)
                    ctgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGa                            >  1:1357525‑M1/27‑51 (MQ=255)
                    ctgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGa                            <  1:5861525‑M1/25‑1 (MQ=255)
                     tgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGaa                           <  1:4266018‑M1/26‑1 (MQ=255)
                     tgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGaa                           <  1:6352842‑M1/26‑1 (MQ=255)
                       tccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAAt                         >  1:3912918‑M1/24‑51 (MQ=255)
                       tccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAAt                         >  1:1072240‑M1/24‑51 (MQ=255)
                         caactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATgg                       <  1:2024958‑M1/30‑1 (MQ=255)
                           actttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGt                     >  1:2603035‑M1/20‑51 (MQ=255)
                           actttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGt                     >  1:2369282‑M1/20‑51 (MQ=255)
                             tttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGc                   >  1:896399‑M1/18‑51 (MQ=255)
                             tttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGc                   <  1:4990459‑M1/34‑1 (MQ=255)
                              ttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATggg                      <  1:5251252‑M1/31‑1 (MQ=255)
                              ttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCt                  >  1:953715‑M1/17‑51 (MQ=255)
                              ttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCt                  >  1:2732393‑M1/17‑51 (MQ=255)
                              ttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCt                  >  1:2846975‑M1/17‑51 (MQ=255)
                               tttggggtcagtacaCAACAAGGCTACGGCAAGTCACCGAAATGGGTGCTc                 <  1:3345128‑M1/36‑1 (MQ=255)
                                ttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCa                <  1:3927741‑M1/37‑1 (MQ=255)
                                ttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCa                >  1:6986219‑M1/15‑51 (MQ=255)
                                 tggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCaa               <  1:1793504‑M1/38‑1 (MQ=255)
                                 tggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCaa               <  1:121283‑M1/38‑1 (MQ=255)
                                   gggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATc             >  1:1893714‑M1/12‑51 (MQ=255)
                                   gggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATc             >  1:4972155‑M1/12‑51 (MQ=255)
                                   gggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATc             >  1:3594296‑M1/12‑51 (MQ=255)
                                    ggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCa            >  1:6389115‑M1/11‑51 (MQ=255)
                                     gtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCAt           >  1:6334360‑M1/10‑51 (MQ=255)
                                     gtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCAt           >  1:94995‑M1/10‑51 (MQ=255)
                                     gtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCAt           <  1:5650602‑M1/42‑1 (MQ=255)
                                      tcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATa          <  1:4556593‑M1/43‑1 (MQ=255)
                                       cagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATAc         >  1:6450839‑M1/8‑51 (MQ=255)
                                       cagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATAc         >  1:3810983‑M1/8‑51 (MQ=255)
                                        agtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATAcc        >  1:6799931‑M1/7‑51 (MQ=255)
                                        agtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATAcc        >  1:3001300‑M1/7‑51 (MQ=255)
                                          tacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCg      >  1:3730986‑M1/5‑51 (MQ=255)
                                           acaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGt     >  1:2087854‑M1/4‑51 (MQ=255)
                                           acaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGt     >  1:3341063‑M1/4‑51 (MQ=255)
                                            caCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTc    <  1:582944‑M1/49‑1 (MQ=255)
                                            caCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTc    <  1:3330547‑M1/49‑1 (MQ=255)
                                            caCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTc    <  1:5325187‑M1/49‑1 (MQ=255)
                                            caCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGNc    >  1:1433096‑M1/3‑51 (MQ=255)
                                             aCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCt   >  1:6222857‑M1/2‑51 (MQ=255)
                                              caacaaGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCtg  <  1:1896627/51‑1 (MQ=255)
                                              |                                                  
CGAGCAAAAGCGACTGCGTGGTTTTGGTCGCATGTTGGTAGCCCTGCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTG  >  REL606/2092981‑2093077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.