Predicted mutation
evidence seq id position mutation annotation gene description
MC JC REL606 4,275,717 57510 bp→GTACA [yjcO][lysU] 52 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 4275717 4333226 57510 108 [1] [0] 110 [yjcO]–[lysU] [yjcO],fdhF,yjcP,yjcQ,yjcR,yjcS,alsK,alsE,alsC,alsA,alsB,rpiR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,phnC,phnB,phnA,yjdA,yjcZ,proP,basS,basR,yjdB,yjdE,adiY,adiA,melR,melA,melB,yjdF,fumB,dcuB,dcuR,dcuS,dcuS,yjdI,yjdJ,yjdK,[lysU]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 42757161 (0.010)98 (1.370)
+GTACA
56/90 0.0 99.5% coding (232/690 nt) yjcO hypothetical protein
?REL606 4333227 = 0 (0.000)coding (211/1518 nt) lysU lysine tRNA synthetase, inducible

Only 100 of 113 total aligned reads displayed.

CTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/4275668‑4275716
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCA  >  REL606/4333227‑4333276
                                                 |||||                                                  
CTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGT                                                       >  1:1554020/1‑51
 TGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTA                                                      <  1:2626345/51‑1
 TGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTA                                                      >  1:6808281/1‑51
 TGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTA                                                      <  1:6067147/51‑1
   CAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACA                                                    >  1:3878911/1‑51
    AAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACAC                                                   >  1:2967250/1‑51
    AAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACAC                                                   >  1:647204/1‑51
     AGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACA                                                  <  1:3401558/51‑1
     AGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACA                                                  <  1:6735734/51‑1
     AGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACA                                                  <  1:6645983/51‑1
     AGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACA                                                  <  1:6937839/51‑1
       AACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAAC                                                <  1:2083963/51‑1
        ACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACC                                               <  1:3955770/51‑1
        ACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACC                                               <  1:1976008/51‑1
        ACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACC                                               <  1:593124/51‑1
        ACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACC                                               <  1:3533057/51‑1
        ACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACC                                               <  1:4245171/51‑1
        ACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACC                                               <  1:3409886/51‑1
          TTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGA                                             <  1:4756017/51‑1
          TTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGA                                             <  1:1900692/51‑1
          TTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGA                                             <  1:6683112/51‑1
           TTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAG                                            <  1:3522841/51‑1
           TTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAG                                            >  1:3589997/1‑51
           TTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAG                                            <  1:6517085/51‑1
           TTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAG                                            >  1:395372/1‑51
             TGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGAC                                          >  1:7056760/1‑51
               CTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTT                                        >  1:2816041/1‑51
                TTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTC                                       >  1:4344752/1‑51
                 TGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCA                                      >  1:2563562/1‑51
                 TGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCA                                      >  1:6117134/1‑51
                  GTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAA                                     <  1:1763556/51‑1
                  GTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAA                                     >  1:6205120/1‑51
                   TGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACT                                         <  1:5822671/46‑1
                   TGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCG                                              <  1:2939127/41‑1
                      ATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTT                                 >  1:1336471/1‑51
                      ATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTT                                 <  1:637457/51‑1
                        AGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTA                               >  1:3561823/1‑51
                        AGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTA                               <  1:1562509/51‑1
                        AGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTA                               >  1:2366871/1‑51
                        AGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTA                               >  1:4653854/1‑51
                        AGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTA                               >  1:1048919/1‑51
                         GTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAA                              <  1:850457/51‑1
                         GTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAA                              <  1:5967381/51‑1
                         GTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAA                              <  1:2489801/51‑1
                         GTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTA                               >  1:4194934/1‑50
                          TCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAG                             <  1:5353670/51‑1
                          TCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAG                             <  1:3634893/51‑1
                          TCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAG                             <  1:3929315/51‑1
                           CCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGG                            >  1:7125527/1‑51
                           CCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGG                            <  1:4390189/51‑1
                           CCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGG                            >  1:2979824/1‑51
                           CCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGG                            <  1:3208645/51‑1
                           CCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGG                            <  1:6488666/51‑1
                            CAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGA                           >  1:6238289/1‑51
                            CAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGA                           <  1:3319563/51‑1
                             AGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGAT                          <  1:4044246/51‑1
                             AGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGAT                          <  1:1156258/51‑1
                              GACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATT                         <  1:3348739/51‑1
                              GACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATT                         >  1:337916/1‑51
                               ACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTC                        <  1:6358283/51‑1
                                CTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCC                       <  1:2951480/51‑1
                                 TGACCGGATTGGTGATGTACCCAACCGAGACTTCAATGTTTAAGGATTCCA                      <  1:728718/51‑1
                                 TGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCA                      >  1:4651118/1‑51
                                 TGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCA                      >  1:1639582/1‑51
                                 TGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCA                      <  1:1474069/51‑1
                                 TGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCA                      >  1:4169365/1‑51
                                 TGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCA                      >  1:4919036/1‑51
                                  GACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAG                     <  1:6579910/51‑1
                                    CCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTT                   >  1:2885496/1‑51
                                     CGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTC                  <  1:3627887/51‑1
                                     CGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTC                  >  1:1296451/1‑51
                                      GGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCC                 <  1:5441243/51‑1
                                      GGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCC                 >  1:3281702/1‑51
                                      GGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCC                 >  1:3915105/1‑51
                                       GATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCT                <  1:2546646/51‑1
                                       GATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCT                >  1:2677316/1‑51
                                        ATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTG               <  1:2494800/51‑1
                                        ATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTG               >  1:2049201/1‑51
                                        ATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTG               <  1:6450777/51‑1
                                         TTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGG              <  1:6880498/51‑1
                                         TTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGG              >  1:4753702/1‑51
                                          TGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGT             >  1:4016484/1‑51
                                          TGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGT             >  1:4423610/1‑51
                                           GGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTT            <  1:3494142/51‑1
                                           GGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTT            <  1:7136815/51‑1
                                           GGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTT            >  1:3310339/1‑51
                                            GTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTA           >  1:2942321/1‑51
                                            GTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTA           >  1:7208564/1‑51
                                            GTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTA           >  1:1691104/1‑51
                                             TGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTAT          >  1:5234880/1‑51
                                             TGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTAT          <  1:7238477/51‑1
                                              GATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATC         <  1:7030739/51‑1
                                                 GTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTT      >  1:1145902/1‑51
                                                  TACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTC     <  1:2555148/51‑1
                                                  TACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTC     >  1:3518498/1‑51
                                                  TACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTC     <  1:7183792/51‑1
                                                   ACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCG    <  1:1611491/51‑1
                                                   ACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCG    >  1:6365967/1‑51
                                                   ACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCG    <  1:3801532/51‑1
                                                    CACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGC   <  1:3791609/51‑1
                                                 |||||                                                  
CTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/4275668‑4275716
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCA  >  REL606/4333227‑4333276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.