| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3697156 = | NA (NA) | 125 (1.570) | 64/100 | 0.0 | NA | coding (280/4134 nt) | rhsA | rhsA element core protein RshA |
| ? | REL606 | 3893553 = | NA (NA) | intergenic (+8/‑48) | kup/insJ‑5 | potassium transporter/IS150 hypothetical protein | |||||
Only 100 of 125 total aligned reads displayed.
TGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3697204‑3697156‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT > REL606/3893553‑3893602 TGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCT > 1:5964457/1‑51 GTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTG > 1:5829376/1‑51 GTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTG < 1:3517772/51‑1 GTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTG < 1:763776/51‑1 TATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTA > 1:6323626/1‑51 TCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACT > 1:2969622/1‑51 CGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTG < 1:1489230/51‑1 CGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCA > 1:1265076/1‑51 GCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCAC < 1:5612593/51‑1 GCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCAC > 1:908607/1‑51 CAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACC > 1:2284467/1‑51 CAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACC < 1:1717869/51‑1 AGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCC > 1:2678276/1‑51 GCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCA < 1:2717623/51‑1 CTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCAT < 1:5542592/51‑1 TGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATT < 1:6028687/51‑1 TGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATT > 1:2243992/1‑51 TGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATT < 1:1642250/51‑1 GTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTT < 1:4879343/51‑1 GTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTT < 1:4249590/51‑1 GTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTT < 1:1487691/51‑1 GTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTT < 1:114304/51‑1 TAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCTCCCATTTT < 1:2887888/51‑1 TAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTT < 1:1774488/51‑1 TAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTT > 1:2875999/1‑51 TAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTT > 1:5124079/1‑51 AGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGT < 1:1945405/51‑1 AGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGT > 1:5779998/1‑51 CGGGTATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTG > 1:7135365/1‑51 CGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTG > 1:7135368/1‑51 CGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTG > 1:713734/1‑51 GGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGG > 1:2352422/1‑51 GGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGG < 1:5629171/51‑1 GGATATCCGC‑GGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGA < 1:5040498/51‑1 GATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGA < 1:4755594/51‑1 GATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGA < 1:5157864/51‑1 ATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGAC > 1:2088641/1‑51 ATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGAC > 1:3392669/1‑51 TATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACG > 1:2582570/1‑51 TATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACG > 1:6183063/1‑51 TATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACG < 1:2500853/51‑1 TATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGAC < 1:6018169/50‑1 TCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGAT > 1:3428302/1‑51 TCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGAT > 1:2857794/1‑51 CGCAGGCTTTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGA < 1:1584255/48‑1 CGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGA > 1:2073840/1‑51 GCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGNA < 1:813604/51‑1 GCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAA > 1:1923576/1‑51 CAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAA < 1:3869693/51‑1 CAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAA < 1:5613925/51‑1 AGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAAT > 1:2020054/1‑51 AGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAAT > 1:329228/1‑51 AGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAAT > 1:3026885/1‑51 AGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAAT > 1:1358081/1‑51 GGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATG < 1:5363025/51‑1 GGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATG > 1:4762869/1‑51 GGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATG < 1:1473828/51‑1 GCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGG < 1:2328124/51‑1 ATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA > 1:6074949/1‑51 TTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA > 1:980509/1‑51 TTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 1:6055142/51‑1 TTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA > 1:1449931/1‑51 TTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 1:858860/51‑1 TTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 1:337203/51‑1 TTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA > 1:3820919/1‑51 TTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG > 1:7285364/1‑51 TCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC > 1:3088509/1‑51 TCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC < 1:615632/51‑1 CCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCC < 1:3328921/51‑1 AGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCC > 1:4719247/1‑51 GCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT < 1:3947899/51‑1 GCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT < 1:735232/51‑1 GCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATG > 1:3292558/1‑40 CCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA < 1:4624561/51‑1 CGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA < 1:3299377/51‑1 CGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA < 1:6431894/51‑1 CGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA < 1:111990/51‑1 CGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA < 1:3452941/51‑1 CGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA > 1:3457647/1‑51 CGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA > 1:135050/1‑51 GGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT < 1:7256338/51‑1 GGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT > 1:4187350/1‑51 GGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT < 1:2956317/51‑1 GGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT > 1:6235517/1‑51 GGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT < 1:1553794/51‑1 GGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT < 1:3166157/51‑1 GGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT > 1:3420789/1‑51 GGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT < 1:6759731/51‑1 GGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA > 1:6152512/1‑51 GGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA > 1:1552073/1‑51 GGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA > 1:100245/1‑51 GGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA < 1:1147366/51‑1 GGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA > 1:4421012/1‑51 GGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA > 1:5228435/1‑51 GGCTATACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA > 1:6355815/1‑51 GCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < 1:6869350/51‑1 GCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < 1:1256509/51‑1 GCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < 1:1973711/51‑1 GCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < 1:4525447/51‑1 GCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < 1:4591337/51‑1 TGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3697204‑3697156‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT > REL606/3893553‑3893602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |