| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3652533 | NA (NA) | 199 (2.500) | 78/100 | 0.0 | NA | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 3697156 | NA (NA) | coding (280/4134 nt) | rhsA | rhsA element core protein RshA | |||||
Only 100 of 199 total aligned reads displayed.
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652484‑3652533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTGTAG < REL606/3697156‑3697107 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:4892870/1‑51CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:3306822/1‑51CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:899202/51‑1CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:3215309/51‑1CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:3089871/51‑1CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:7036077/1‑51CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:6897098/1‑51CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:2644524/1‑51CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:6763159/51‑1 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG < 1:5669879/51‑1 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG > 1:750322/1‑51 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGC < 1:5699111/51‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGC < 1:6507572/51‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGC < 1:5853513/51‑1 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGgc < 1:2973944/51‑3 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGgc < 1:6579718/51‑3 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCC < 1:4628777/51‑1 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCC < 1:2828979/51‑1 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCC < 1:5156284/51‑1 CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCG > 1:2133930/1‑51 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGA < 1:2846734/51‑1 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGA < 1:5299728/51‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG < 1:1922065/51‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG > 1:6851850/1‑51 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG > 1:2610103/1‑51 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG < 1:1067598/51‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG < 1:6110810/51‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG > 1:299807/1‑51 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGG > 1:6671469/1‑51 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGG < 1:5029604/51‑1 TATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGC > 1:4573251/1‑51 ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCT > 1:2926520/1‑51 ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCT > 1:3870270/1‑51 GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCC > 1:5767854/1‑51 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCC < 1:4273980/51‑1 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCC > 1:3340965/1‑51 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCA < 1:4464748/51‑1 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCA < 1:2511451/51‑1 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCC > 1:7127971/1‑50 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCAC > 1:5607038/1‑51 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACC > 1:966920/1‑51 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACC < 1:6440478/51‑1 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCG > 1:6404391/1‑51 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCG > 1:5866111/1‑51 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGG > 1:347046/1‑51 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCTCACCGG > 1:6033318/1‑50 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGC < 1:4426531/51‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGC < 1:2293623/51‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGC < 1:5939998/51‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGC < 1:1699844/51‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGC < 1:1209158/51‑1 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCG < 1:3736686/51‑1 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGC > 1:629068/1‑50 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCAC < 1:3929828/46‑1 TTAACTGTCCAACTTTTTGGGGTCAGTACAGACCGAGGCTCCCCACCGGCG > 1:6011119/1‑51 TAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGC < 1:6974404/51‑1 AACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCG < 1:4941906/51‑1 AACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCG < 1:4679279/51‑1 TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGC < 1:2704928/51‑1 TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGC < 1:3825646/51‑1 TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGC < 1:3372259/51‑1 TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGC < 1:1194333/51‑1 GTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCG < 1:7234491/51‑1 GTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCG < 1:5493381/51‑1 GTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCC > 1:2291544/1‑38 TCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGG > 1:109602/1‑42 CCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTT < 1:4232422/51‑1 CCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG > 1:4521052/1‑47 CCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG > 1:1569825/1‑47 CCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG > 1:1657611/1‑47 CAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG > 1:3945833/1‑46 AACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTT > 1:3965306/1‑51 ACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT < 1:5324534/51‑1 ACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT < 1:4352445/51‑1 ACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGGTTTT > 1:3417416/1‑51 CTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTG < 1:2407489/51‑1 CTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTG < 1:418003/51‑1 TTTTTGGGGTCAGTACAGGCCGAGGCTCCCCCCCGG > 1:2242246/1‑36 TTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGT < 1:7010321/51‑1 TTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG > 1:1346286/1‑42 TTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCG > 1:367248/1‑38 TTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTC > 1:5904133/1‑51 TTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTC < 1:527631/51‑1 TTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG > 1:786492/1‑41 TTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCC < 1:4133854/51‑1 TTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGGTTTT > 1:3059833/1‑47 TTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGGTTTT > 1:2771475/1‑47 TGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGG < 1:483522/51‑1 TGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGG < 1:2055756/51‑1 GGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGT < 1:11040/51‑1 GGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGG > 1:4989535/1‑50 GGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG > 1:3625091/1‑35 GTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAAC < 1:2207753/51‑1 GTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAAC > 1:6392351/1‑51 TCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACT < 1:4923233/51‑1 TCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG > 1:2018722/1‑33 CAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGGTTTTGTCCGGTAACTG > 1:4822441/1‑51 AGTACAGGCCGAGGCTCCCCACCGGCGCGGG > 1:1028082/1‑31 ACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTGT > 1:7277833/1‑51 AGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTGTAG < 1:472445/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652484‑3652533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTGTAG < REL606/3697156‑3697107 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |