New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3630716NA (NA)65 (0.820) 50/100 0.3 NA intergenic (‑171/‑305) ldrD/yhjV toxic polypeptide, small/predicted transporter
?REL606 = 3652533 NA (NA)noncoding (1443/1443 nt) IS150 repeat region

GCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3630667‑3630716
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT  <  REL606/3652533‑3652485
                                                                                                   
GCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGT                                                  <  1:2064054/51‑1
 CAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTG                                                 >  1:1902148/1‑51
  AACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGT                                                >  1:1281703/1‑51
  AACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGT                                                <  1:6978596/51‑1
      AATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTG                                            >  1:6411214/1‑51
      AATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTG                                            <  1:593507/51‑1
        TGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGAC                                          <  1:5233957/51‑1
        TGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGAC                                          >  1:3234407/1‑51
         GCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACC                                         <  1:5824593/51‑1
         GCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACC                                         <  1:2311678/51‑1
          CCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCC                                        >  1:2867706/1‑51
           CACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCC                                       >  1:3012442/1‑51
           CACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCC                                       <  1:1605980/51‑1
            ACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCA                                      <  1:6775192/51‑1
             CCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAA                                     <  1:3190679/51‑1
               AGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAA                                   <  1:1431267/51‑1
                GGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAA                                  <  1:3716187/51‑1
                GGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAA                                  <  1:3680465/51‑1
                GGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAA                                  <  1:3390393/51‑1
                 GGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAG                                 >  1:3192884/1‑51
                  GATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGT                                <  1:5638323/51‑1
                  GATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGT                                >  1:2050252/1‑51
                   ATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTT                               <  1:1808125/51‑1
                   ATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTT                               >  1:1522933/1‑51
                    TAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTG                              >  1:4697802/1‑51
                     AAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGG                             <  1:5199168/51‑1
                        GCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA                          >  1:6993134/1‑51
                        GCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA                          <  1:1975677/51‑1
                        GCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA                          <  1:687847/51‑1
                          CCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGT                        >  1:5904450/1‑51
                           CCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTT                       <  1:5535132/51‑1
                           CCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTT                       <  1:6976744/51‑1
                            CCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTA                      >  1:1120727/1‑51
                            CCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTA                      >  1:4079843/1‑51
                             CGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAA                     >  1:2076451/1‑51
                              GCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAA                    <  1:5381057/51‑1
                               CAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC                   <  1:3555117/51‑1
                               CAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC                   >  1:5515038/1‑51
                                AACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA                  <  1:6940504/51‑1
                                AACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA                  <  1:1964174/51‑1
                                AACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA                  >  1:6578427/1‑51
                                 ACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC                 >  1:4132085/1‑51
                                 ACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC                 <  1:5695846/51‑1
                                 ACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC                 <  1:764562/51‑1
                                  CATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG                <  1:1894467/51‑1
                                  CATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC                 >  1:6055758/1‑50
                                   ATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA               >  1:849222/1‑51
                                     TGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG             >  1:4144048/1‑51
                                     TGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG             <  1:2641394/51‑1
                                       CGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA           >  1:5758435/1‑51
                                        GCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAT          >  1:219749/1‑51
                                         CCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA         >  1:6662170/1‑51
                                           TCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATANA       <  1:1413050/51‑1
                                            CACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG      <  1:3400764/51‑1
                                            CACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG      >  1:5806506/1‑51
                                            CACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG      <  1:1254466/51‑1
                                             ACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG     >  1:5130792/1‑51
                                              CCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT    <  1:5965585/51‑1
                                              CCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT    <  1:4664388/51‑1
                                              CCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT    >  1:2989388/1‑51
                                              CCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT    >  1:6830478/1‑51
                                                GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT  >  1:3304334/1‑51
                                                GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT  <  1:4911246/51‑1
                                                GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT  >  1:6617282/1‑51
                                                GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT  <  1:6809346/51‑1
                                                                                                   
GCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3630667‑3630716
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT  <  REL606/3652533‑3652485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.