New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3630716 | NA (NA) | 65 (0.820) | 50/100 | 0.3 | NA | intergenic (‑171/‑305) | ldrD/yhjV | toxic polypeptide, small/predicted transporter |
? | REL606 | = 3652533 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region |
GCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3630667‑3630716 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < REL606/3652533‑3652485 GCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGT < 1:2064054/51‑1 CAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTG > 1:1902148/1‑51 AACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGT > 1:1281703/1‑51 AACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGT < 1:6978596/51‑1 AATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTG > 1:6411214/1‑51 AATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTG < 1:593507/51‑1 TGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGAC < 1:5233957/51‑1 TGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGAC > 1:3234407/1‑51 GCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACC < 1:5824593/51‑1 GCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACC < 1:2311678/51‑1 CCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCC > 1:2867706/1‑51 CACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCC > 1:3012442/1‑51 CACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCC < 1:1605980/51‑1 ACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCA < 1:6775192/51‑1 CCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAA < 1:3190679/51‑1 AGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAA < 1:1431267/51‑1 GGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAA < 1:3716187/51‑1 GGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAA < 1:3680465/51‑1 GGGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAA < 1:3390393/51‑1 GGATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAG > 1:3192884/1‑51 GATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGT < 1:5638323/51‑1 GATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGT > 1:2050252/1‑51 ATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTT < 1:1808125/51‑1 ATAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTT > 1:1522933/1‑51 TAAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTG > 1:4697802/1‑51 AAAGCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGG < 1:5199168/51‑1 GCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA > 1:6993134/1‑51 GCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA < 1:1975677/51‑1 GCCCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACA < 1:687847/51‑1 CCCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGT > 1:5904450/1‑51 CCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTT < 1:5535132/51‑1 CCCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTT < 1:6976744/51‑1 CCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTA > 1:1120727/1‑51 CCGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTA > 1:4079843/1‑51 CGCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAA > 1:2076451/1‑51 GCAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:5381057/51‑1 CAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:3555117/51‑1 CAACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC > 1:5515038/1‑51 AACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:6940504/51‑1 AACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:1964174/51‑1 AACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:6578427/1‑51 ACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 1:4132085/1‑51 ACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC < 1:5695846/51‑1 ACATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC < 1:764562/51‑1 CATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG < 1:1894467/51‑1 CATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 1:6055758/1‑50 ATTGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA > 1:849222/1‑51 TGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG > 1:4144048/1‑51 TGCGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG < 1:2641394/51‑1 CGCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA > 1:5758435/1‑51 GCCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAT > 1:219749/1‑51 CCTCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA > 1:6662170/1‑51 TCACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATANA < 1:1413050/51‑1 CACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG < 1:3400764/51‑1 CACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG > 1:5806506/1‑51 CACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG < 1:1254466/51‑1 ACCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > 1:5130792/1‑51 CCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT < 1:5965585/51‑1 CCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT < 1:4664388/51‑1 CCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT > 1:2989388/1‑51 CCGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT > 1:6830478/1‑51 GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT > 1:3304334/1‑51 GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < 1:4911246/51‑1 GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT > 1:6617282/1‑51 GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < 1:6809346/51‑1 GCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3630667‑3630716 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < REL606/3652533‑3652485 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |