Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 3,270,443 IS150 (–) +4 bp intergenic (+21/+24) nlp → / ← murA DNA‑binding transcriptional activator of maltose metabolism/UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3270443 =0 (0.000)63 (0.790) 43/100 0.7 100% intergenic (+21/+27) nlp/murA DNA‑binding transcriptional activator of maltose metabolism/UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
?REL606 3651091 = NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 32704460 (0.000)116 (1.460) 58/100 0.1 100% intergenic (+24/+24) nlp/murA DNA‑binding transcriptional activator of maltose metabolism/UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
?REL606 = 3652533 NA (NA)noncoding (1443/1443 nt) IS150 repeat region

TTGAGCGTGTGAAAGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3270492‑3270443
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT  >  REL606/3651091‑3651139
                                                                                                   
TTGAGCGTGTGAAAGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGT                                                  >  1:6509135/1‑51
 TGAGCGTGTGAAAGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTG                                                 >  1:2193881/1‑51
 TGAGCGTGTGAAAGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTG                                                 <  1:3793557/51‑1
  GAGCGTGTGAAAGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGT                                                >  1:4211143/1‑51
  GAGCGTGTGAAAGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGT                                                >  1:3619600/1‑51
     CGTGTGAAAGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACT                                             >  1:5237469/1‑51
     CGTGTGAAAGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACT                                             >  1:2385470/1‑51
       TGTGAAAGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGC                                           <  1:4745176/51‑1
        GTGAAAGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCA                                          >  1:5114288/1‑51
           AAAGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCC                                       >  1:3807314/1‑51
           AAAGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCC                                       >  1:692089/1‑51
            AAGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACC                                        >  1:800817/1‑49
             AGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCAT                                     <  1:4887311/51‑1
              GGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATT                                    <  1:4289811/51‑1
                CGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTT                                  >  1:2264829/1‑51
                CGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTT                                  >  1:3222871/1‑51
                CGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTT                                  <  1:1320372/51‑1
                 GAGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTG                                 >  1:2906447/1‑51
                  AGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGT                                >  1:2734233/1‑51
                  AGTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGT                                >  1:1238713/1‑51
                   GTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTT                               <  1:4519926/51‑1
                   GTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTT                               >  1:2084776/1‑51
                   GTAATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTT                               <  1:6467353/51‑1
                     AATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGG                             <  1:5691645/51‑1
                      ATCGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGA                            <  1:2939433/51‑1
                        CGTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACG                          <  1:4840074/51‑1
                         GTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGA                         <  1:6713904/51‑1
                         GTCTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGA                         <  1:5573151/51‑1
                           CTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATG                       <  1:5005634/51‑1
                           CTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATG                       >  1:1226573/1‑51
                           CTGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATG                       >  1:4667711/1‑51
                            TGAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGA                      >  1:1777144/1‑51
                             GAAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAA                     <  1:1415064/51‑1
                              AAAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAA                    <  1:2350643/51‑1
                               AAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAAT                   >  1:2918858/1‑51
                               AAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAAT                   >  1:2051116/1‑51
                               AAGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAA                     >  1:2071018/1‑49
                                AGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATG                  >  1:7210114/1‑51
                                AGCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATG                  >  1:4364415/1‑51
                                 GCTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGG                 <  1:6568057/51‑1
                                  CTGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGA                >  1:6043814/1‑51
                                   TGGCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA               >  1:2465863/1‑51
                                     GCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA             <  1:2228881/51‑1
                                     GCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA             <  1:3099009/51‑1
                                     GCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA             <  1:542962/51‑1
                                     GCAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA             <  1:6912829/51‑1
                                      CAGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG            <  1:5693739/51‑1
                                       AGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC           >  1:4468583/1‑51
                                       AGCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC           >  1:2853872/1‑51
                                        GCCCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGNC          <  1:655086/51‑1
                                          CCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCC        >  1:4119982/1‑51
                                          CCCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCC        >  1:7212322/1‑51
                                           CCGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT       <  1:3330019/51‑1
                                            CGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA      <  1:106589/51‑1
                                            CGTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA      <  1:5343275/51‑1
                                             GTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA     <  1:1431641/51‑1
                                             GTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA     >  1:6436323/1‑51
                                             GTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA     <  1:6117799/51‑1
                                             GTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA     >  1:6896667/1‑51
                                             GTACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA     <  1:2719267/51‑1
                                              TACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT    >  1:2078817/1‑51
                                              TACGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT    <  1:4558701/51‑1
                                                CGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT  >  1:347652/1‑51
                                                                                                   
TTGAGCGTGTGAAAGGCGAGTAATCGTCTGAAAGCTGGCAGCCCCGTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3270492‑3270443
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT  >  REL606/3651091‑3651139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.