New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2775877NA (NA)72 (0.900) 53/100 0.2 100% noncoding (1/1443 nt) IS150 repeat region
?REL606 3048489 = 0 (0.000)intergenic (‑318/+37) yghK/glcB glycolate transporter/malate synthase

TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2775830‑2775877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCT  >  REL606/3048489‑3048538
                                                                                                  
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCC                                                 >  1:842703/1‑51
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCC                                                 >  1:4701703/1‑51
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCC                                                 >  1:3251594/1‑51
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCC                                                 >  1:2768886/1‑51
   TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGAC                                              >  1:3932758/1‑51
    AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGAGCAGTACACCCGACA                                             >  1:3929755/1‑51
      GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAAT                                           >  1:6280303/1‑51
       GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATA                                          >  1:4903894/1‑51
       GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATA                                          >  1:6956301/1‑51
        GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAA                                         >  1:1161465/1‑51
         CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAA                                        <  1:5837434/51‑1
         CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAA                                        <  1:6104952/51‑1
          TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAA                                       >  1:5063446/1‑51
          TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAA                                       >  1:6001012/1‑51
           ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAAC                                      >  1:2909754/1‑51
           ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGAC                                              <  1:2395206/43‑1
            TTCCATTTCATCGTCCAAAAAAATGGGTGCAGTACCCCCGACAATAAAAC                                      <  1:212517/50‑1
             TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTT                                    >  1:4317614/1‑51
             TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTT                                    >  1:2062578/1‑51
             TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTT                                    <  1:6083710/51‑1
               CATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGC                                  <  1:3532889/51‑1
                ATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCC                                 >  1:4541369/1‑51
                 TTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCG                                >  1:2298240/1‑51
                 TTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCG                                <  1:5832546/51‑1
                 TTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCG                                >  1:5199827/1‑51
                 TTTCATCGTCCAACAAAATGGGCGCAGTACACCCGACAATAAAACTTGCCG                                >  1:5669652/1‑51
                  TTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGG                               >  1:2429026/1‑51
                   TCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGG                              >  1:2620182/1‑51
                   TCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGG                              <  1:5160819/51‑1
                     ATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGC                            >  1:6350574/1‑51
                     ATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGC                            >  1:276954/1‑51
                      TCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCT                           >  1:1382411/1‑51
                       CGTCCAACAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTT                          <  1:3678147/51‑1
                       CGTCCAACAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTT                          <  1:5429444/51‑1
                       CGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTT                          >  1:7142849/1‑51
                        GTCCAACAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTT                         <  1:2307379/51‑1
                        GTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTT                         >  1:3887979/1‑51
                         TCCAACAAAATGGGTGCCGTACACCCGACAATAAAACTTGCCGGGGCTTTT                        <  1:5846656/51‑1
                         TCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTT                        >  1:558104/1‑51
                          CCAACAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTTT                       <  1:4777443/51‑1
                          CCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTT                       >  1:4371418/1‑51
                          CCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTT                       <  1:5735777/51‑1
                           CAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTT                      >  1:5152649/1‑51
                           CAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTT                      >  1:2267690/1‑51
                            AACAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTTTT                      <  1:2746079/50‑1
                            AACAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTT                        <  1:1727449/48‑1
                            AACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTG                     >  1:3511907/1‑51
                              CAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTTTTGAC                   <  1:3330591/51‑1
                              CAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGAC                   >  1:6992486/1‑51
                               AAAATGGGTGCAGTCCCCCCGACAATAAAACTTGCCGGGGCTTTTTTGACG                  <  1:2287748/51‑1
                               AAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTTTTGACG                  <  1:5626630/51‑1
                               AAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACG                  <  1:5661440/51‑1
                               AAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACG                  >  1:7274781/1‑51
                                 AATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCT                <  1:2430649/51‑1
                                  ATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTA               >  1:1548756/1‑51
                                  ATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTA               <  1:4471812/51‑1
                                   TGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTAT              >  1:3484880/1‑51
                                   TGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTAT              <  1:4433391/51‑1
                                    GGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATT             <  1:5800658/51‑1
                                      GTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAA           <  1:1315958/51‑1
                                      GTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAA           >  1:6956794/1‑51
                                        GCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTA            <  1:3537074/48‑1
                                         CAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGA        >  1:3848410/1‑51
                                         CAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGA        <  1:820641/51‑1
                                          AGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGAC       >  1:1313882/1‑51
                                          AGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGAC       >  1:4031875/1‑51
                                            TACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTT     >  1:3667487/1‑51
                                            TACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTT     >  1:2733626/1‑51
                                             ACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTT    <  1:5463643/51‑1
                                             ACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTT    <  1:4094056/51‑1
                                              CACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATT             >  1:5125880/1‑41
                                               ACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCT  >  1:93190/1‑51
                                                                                                  
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2775830‑2775877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCT  >  REL606/3048489‑3048538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.