Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 2,405,131 IS1 (–) +9 bp coding (168‑176/1347 nt) fadL → long‑chain fatty acid outer membrane transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2263507NA (NA)108 (1.360) 52/100 0.2 100% noncoding (1/768 nt) IS1 repeat region
?REL606 2405131 = 0 (0.000)coding (168/1347 nt) fadL long‑chain fatty acid outer membrane transporter
* ? REL606 = 24051390 (0.000)85 (1.070) 53/100 0.2 100% coding (176/1347 nt) fadL long‑chain fatty acid outer membrane transporter
?REL606 2407442 = NA (NA)noncoding (768/768 nt) IS1 repeat region

Only 100 of 108 total aligned reads displayed.

CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2263458‑2263507
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGCCCGACATTT  >  REL606/2405131‑2405179
                                                                                                   
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                  <  1:4220964/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                  <  1:7031079/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                  >  1:6184484/1‑51
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                  <  1:609824/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                  <  1:5808188/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                  >  1:5102185/1‑51
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                  >  1:501913/1‑51
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                  >  1:4528199/1‑51
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                  <  1:395989/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                  <  1:3479427/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                  <  1:268528/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                  <  1:180367/51‑1
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                 <  1:891448/51‑1
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                 >  1:7299908/1‑51
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                 <  1:1139286/51‑1
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                 >  1:7255457/1‑51
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                 <  1:2143164/51‑1
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                 <  1:1250115/51‑1
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                 >  1:6176386/1‑51
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                 >  1:4289823/1‑51
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                 <  1:3822662/51‑1
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                 >  1:3168289/1‑51
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                 >  1:2768996/1‑51
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                 >  1:2407354/1‑51
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                 >  1:2749574/1‑51
  CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGT                                                <  1:5580265/51‑1
  CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGT                                                >  1:2612800/1‑51
   CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTC                                               >  1:6825500/1‑51
   CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTC                                               <  1:4535604/51‑1
    TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCA                                              >  1:6976916/1‑51
     CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAG                                             <  1:46635/51‑1
     CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAG                                             <  1:2304419/51‑1
      AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGC                                            >  1:1718807/1‑51
      AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGC                                            >  1:2943396/1‑51
       AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCC                                           <  1:704196/51‑1
        AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCG                                          <  1:2675845/51‑1
         AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGT                                         >  1:6123468/1‑51
          ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTA                                        >  1:2379173/1‑51
           CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAA                                       <  1:1990390/51‑1
            ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAAC                                      >  1:4876351/1‑51
            ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAAC                                      >  1:656463/1‑51
             CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAAC                                      <  1:1654070/50‑1
              CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCC                                    <  1:4818999/51‑1
              CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCC                                    <  1:279302/51‑1
               ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCC                                   <  1:2412281/51‑1
               ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCC                                   <  1:2343779/51‑1
               ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCC                                   <  1:3354982/51‑1
               ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCC                                   >  1:6371661/1‑51
                TCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCG                                  >  1:700491/1‑51
                TCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCG                                  <  1:2175287/51‑1
                 CATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGC                                 >  1:1404143/1‑51
                 CATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGC                                 <  1:1723854/51‑1
                  ATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCA                                <  1:1110246/51‑1
                  ATACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCA                                >  1:7250658/1‑51
                   TACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCAT                               >  1:4962741/1‑51
                   TACACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCAT                               >  1:5088271/1‑51
                     CACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTG                             >  1:5010727/1‑51
                      ACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGA                            >  1:7024857/1‑51
                      ACTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGA                            <  1:520692/51‑1
                       CTAAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGAT                           >  1:6117524/1‑51
                         AAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTA                         >  1:7242594/1‑51
                         AAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTA                         >  1:4604192/1‑51
                         AAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTA                         >  1:3311659/1‑51
                         AAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTA                         >  1:3084373/1‑51
                         AAATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTA                         <  1:3787226/51‑1
                          AATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTAC                        >  1:3900811/1‑51
                          AATCAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTAC                        >  1:5668197/1‑51
                             CAGTAAGTTGGCAGCATCCCCCGTCAGCCGTAACCCCGCATTGATTACTAT                     <  1:5910799/51‑1
                             CAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTAT                     >  1:5274835/1‑51
                             CAGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTAT                     >  1:5049430/1‑51
                              AGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATG                    >  1:7203594/1‑51
                              AGTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATG                    <  1:6765962/51‑1
                               GTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGT                   >  1:1085149/1‑51
                               GTAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGT                   >  1:6389466/1‑51
                                TAAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTT                  <  1:3447649/51‑1
                                 AAGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTT                 >  1:2880016/1‑51
                                  AGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTG                >  1:1327142/1‑51
                                  AGTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTG                >  1:2584754/1‑51
                                   GTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGA               <  1:1074119/51‑1
                                   GTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGA               >  1:217220/1‑51
                                   GTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGA               <  1:1982931/51‑1
                                   GTTGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGA               >  1:2191870/1‑51
                                     TGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACC             <  1:5094423/51‑1
                                     TGGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACC             <  1:1692984/51‑1
                                      GGCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCG            >  1:5671579/1‑51
                                       GCAGCATCGCCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGC           <  1:322058/51‑1
                                       GCAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGC           <  1:6717441/51‑1
                                        CAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGCC          >  1:210669/1‑51
                                        CAGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGCC          <  1:5242088/51‑1
                                         AGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGCCC         >  1:4692624/1‑51
                                         AGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGCCC         <  1:5300923/51‑1
                                         AGCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACC             <  1:4986800/47‑1
                                          GCATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGCCCG        <  1:2778140/51‑1
                                           CATCACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGCCCGA       <  1:2565927/51‑1
                                               ACCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGCCCGACATT   >  1:6031437/1‑51
                                                CCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGCCCGACATTT  >  1:381738/1‑51
                                                CCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGCCCGACATTT  >  1:1771148/1‑51
                                                CCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGCCCGACATT   <  1:4114814/50‑1
                                                CCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGCCCGACAT    <  1:876652/49‑1
                                                CCCGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGCCC         <  1:3899221/44‑1
                                                                                                   
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2263458‑2263507
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGTCAGCCGTAACCCCGCATTGATTACTATGTTTGACCGCCCGACATTT  >  REL606/2405131‑2405179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.