| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2093027 = | 0 (0.000) | 71 (0.890) | 49/100 | 0.4 | 100% | coding (1534/3078 nt) | yegO | multidrug efflux system, subunit C |
| ? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
AGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2093076‑2093027‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > REL606/2774435‑2774480 AGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGT > 1:6222857/1‑51 GNCGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTG > 1:1433096/1‑51 GACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTG < 1:3330547/51‑1 GACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTG < 1:5325187/51‑1 GACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTG < 1:582944/51‑1 ACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGT > 1:3341063/1‑51 ACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGT > 1:2087854/1‑51 CGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTA > 1:3730986/1‑51 GGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACT > 1:3001300/1‑51 GGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACT > 1:6799931/1‑51 GTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTG > 1:3810983/1‑51 GTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTG > 1:6450839/1‑51 TATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGA < 1:4556593/51‑1 ATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGAC < 1:5650602/51‑1 ATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGAC > 1:6334360/1‑51 ATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGAC > 1:94995/1‑51 TGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACC > 1:6389115/1‑51 GATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCC > 1:1893714/1‑51 GATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCC > 1:3594296/1‑51 GATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCC > 1:4972155/1‑51 TTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCA < 1:1793504/51‑1 TTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCA < 1:121283/51‑1 TGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAA < 1:3927741/51‑1 TGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAA > 1:6986219/1‑51 GAGCACCCATTTCGGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAA < 1:3345128/51‑1 AGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAA > 1:953715/1‑51 AGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAA > 1:2846975/1‑51 AGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAA > 1:2732393/1‑51 GCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAA < 1:4990459/51‑1 GCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAA > 1:896399/1‑51 ACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGT > 1:2369282/1‑51 ACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGT > 1:2603035/1‑51 CCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAA < 1:5251252/47‑1 CCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTG < 1:2024958/51‑1 ATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGA > 1:1072240/1‑51 ATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGA > 1:3912918/1‑51 TTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACA < 1:6352842/51‑1 TTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACA < 1:4266018/51‑1 TCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAG < 1:5861525/51‑1 TCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAG > 1:1357525/1‑51 CAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGT < 1:2542387/51‑1 CAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGT > 1:1600181/1‑51 AGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTT > 1:2614239/1‑51 GTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTA > 1:2978150/1‑51 TGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAA < 1:3322228/51‑1 TGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAA > 1:2254605/1‑51 TGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAA < 1:4975742/51‑1 TGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAA > 1:158701/1‑51 GACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:2790278/51‑1 GACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:1662391/51‑1 GACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:1860681/1‑51 GACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:5730539/1‑51 ACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:1744192/51‑1 CTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:6736476/1‑51 TTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC < 1:6967630/51‑1 CCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG > 1:656839/1‑51 CCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG > 1:1465634/1‑51 CCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG < 1:4160081/51‑1 CGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG > 1:452954/1‑51 CGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG > 1:6431039/1‑51 GTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGC < 1:280332/51‑1 TAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA > 1:6057047/1‑51 AGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAT > 1:1794800/1‑51 GCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA > 1:2862550/1‑51 GCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA < 1:6026705/51‑1 CTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA < 1:479301/51‑1 CTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA > 1:3527043/1‑51 CTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA > 1:3946289/1‑51 CTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA < 1:1036753/51‑1 TTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG < 1:6688976/51‑1 TGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > 1:3045990/1‑51 AGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2093076‑2093027‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > REL606/2774435‑2774480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |