| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,034,358 | Δ19,491 bp | [insB‑14]–[wcaJ] | 20 genes [insB‑14], insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, [wcaJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2034358–2035096 | 2053848 | 18753–19491 | 65 [0] | [0] 62 | [insB‑14]–[wcaJ] | [insB‑14],insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,[wcaJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2034357 | 0 (0.000) | 61 (0.770) | 40/100 | 1.0 | 100% | noncoding (737/768 nt) | IS1 | repeat region |
| ? | REL606 | 2053849 = | 0 (0.000) | coding (823/1395 nt) | wcaJ | predicted UDP‑glucose lipid carrier transferase | |||||
GAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2034308‑2034357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACC > REL606/2053849‑2053898 GAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAG < 1:1965365/51‑1GAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAG < 1:5981553/51‑1 AGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTT > 1:1851266/1‑51 AGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTT > 1:1098574/1‑51 AGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTT > 1:6562462/1‑51 GTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTT < 1:1358579/51‑1 TCTAACAAATATCCGGTAATGGCTCCAACTTATTGATAGTGTTTTAGTTTG < 1:5100395/51‑1 TCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTG < 1:2796552/51‑1 TCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTG > 1:1997273/1‑51 TCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTG < 1:1109620/51‑1 TAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAG > 1:498536/1‑51 TAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAG > 1:5862817/1‑51 TAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAG > 1:6515830/1‑51 AACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGC < 1:4096229/51‑1 AACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGC < 1:1146203/51‑1 CAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAG < 1:5664032/51‑1 AAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGG < 1:6683826/51‑1 AAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGG > 1:3812820/1‑51 AAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGG < 1:7252045/51‑1 AATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGC < 1:3634878/51‑1 AATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGC < 1:6493317/51‑1 TATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGG < 1:5748839/51‑1 ATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGT < 1:5149768/51‑1 ATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGT < 1:151241/51‑1 ATCCGATAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGT > 1:950745/1‑51 TCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTT > 1:360576/1‑51 CCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTA > 1:4834784/1‑51 CGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAA < 1:3510288/51‑1 CGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAA < 1:3261418/51‑1 GTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACC < 1:5396708/51‑1 AATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCC < 1:6497735/51‑1 GACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGA > 1:3903622/1‑51 CTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAA < 1:4539638/51‑1 CTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAA < 1:112930/51‑1 CTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAA < 1:5976097/51‑1 CTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAA < 1:5211102/51‑1 CCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGC < 1:6593323/51‑1 CAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCG < 1:1218219/51‑1 AACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGG < 1:291932/51‑1 ACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGC < 1:3081625/51‑1 ACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGC < 1:2768062/51‑1 CTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCG > 1:5006328/1‑51 CTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAA > 1:1277329/1‑44 TTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGT > 1:6562101/1‑51 TATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTG > 1:6500226/1‑51 TATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTG > 1:140396/1‑51 ATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGT > 1:7215888/1‑51 ATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGT > 1:820640/1‑51 ATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGT < 1:1542110/51‑1 ATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGC < 1:4803033/44‑1 TGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCA > 1:5298369/1‑51 TGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCA > 1:1131321/1‑51 GATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCAT < 1:5981692/51‑1 ATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATA < 1:2786583/51‑1 TAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATAC > 1:4358551/1‑51 AGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACA < 1:6518118/51‑1 GTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCG < 1:2913619/51‑1 TTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGG > 1:7055920/1‑51 TTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGG < 1:1777341/51‑1 TTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCA < 1:4272671/51‑1 AGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACC < 1:4194076/51‑1 GAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2034308‑2034357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACC > REL606/2053849‑2053898 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |