Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_007779	2,176,983	Δ1,199 bp		insH	insH

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007779	2176983–2178177	2178181	5–1199	36 [0]	[0] 37	insH	insH

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 2176982	0 (0.000)	36 (0.820)	32/190	0.4	100%	intergenic (‑281/‑69)	gatB/insH	PTS system galactitol‑specific transporter subunit IIB/IS5 element protein
	?	NC_007779	2178182 =	0 (0.000)					intergenic (+151/+211)	insH/gatZ	IS5 element protein/D‑tagatose 1,6‑bisphosphate aldolase 2, subunit

AGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATGCCTGTGGCCAGGTA  >  NC_007779/2178086‑2178282                                                                                                 |                                                                                                     caataaccaacgataccgccacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGa                                                                                                  <  1:1021546‑M2/5‑1 (MQ=255)   ataaccaccgataccgccacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAAt                                                                                                >  4:14968‑M2/95‑101 (MQ=255)    taaccaacgataccgccacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctaacgacttagCATGAATc                                                                                               <  1:511898‑M2/8‑1 (MQ=255)       ccaacgataccgccacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGcc                                                                                            <  3:463303‑M2/11‑1 (MQ=255)           cgataccgccacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTcac                                                                                        <  1:1560884‑M2/15‑1 (MQ=255)           cgataccgccacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTcac                                                                                        <  1:871590‑M2/15‑1 (MQ=255)                  gccacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCgg                                                                                 <  1:59057‑M2/22‑1 (MQ=255)                    cacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTa                                                                               >  1:592178‑M2/78‑101 (MQ=255)                      cgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTAtt                                                                             <  1:1131039‑M2/26‑1 (MQ=255)                       gtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTg                                                                            <  3:80207‑M2/27‑1 (MQ=255)                         cgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCa                                                                          >  1:675617‑M2/73‑101 (MQ=255)                         cgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCa                                                                          <  3:625316‑M2/29‑1 (MQ=255)                               catcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCg                                                                    >  3:94157‑M2/67‑101 (MQ=255)                                 tcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGtg                                                                  >  1:90992‑M2/65‑101 (MQ=255)                                  catccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGtgc                                                                 <  4:35144‑M2/38‑1 (MQ=255)                                      cgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTgctgct                                                             >  3:1348976‑M2/60‑101 (MQ=255)                                       gcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTc                                                            <  3:1223646‑M2/43‑1 (MQ=255)                                             tgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCAt                                                      <  1:278613‑M2/49‑1 (MQ=255)                                                       ctttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTa                                            <  3:1568622‑M2/59‑1 (MQ=255)                                                              tgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAAtt                                     <  1:1374916‑M2/66‑1 (MQ=255)                                                                ttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCt                                   >  1:323092‑M2/34‑101 (MQ=255)                                                                ttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCt                                   <  3:1416125‑M2/68‑1 (MQ=255)                                                                  ggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGc                                 >  3:1438307‑M2/32‑101 (MQ=255)                                                                        aacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTACCCCGGTAGGGAATTCTGCttctca                           <  1:387766‑M2/76‑2 (MQ=255)                                                                          cagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTgg                         <  3:1034593‑M2/78‑1 (MQ=255)                                                                           agataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGc                        >  2:42495‑M2/23‑101 (MQ=255)                                                                            gataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCa                       <  3:826666‑M2/80‑1 (MQ=255)                                                                               aaatggctgatgacttcgCCTGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAAtt                    >  4:72725‑M2/19‑101 (MQ=255)                                                                                aatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTa                   >  1:247984‑M2/18‑101 (MQ=255)                                                                                aatggcggacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTa                   >  1:1505625‑M2/18‑101 (MQ=255)                                                                                  tggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAAt                 >  1:93007‑M2/16‑101 (MQ=255)                                                                                  tggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAAt                 >  1:742851‑M2/16‑101 (MQ=255)                                                                                   ggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATg                <  1:622839‑M2/87‑1 (MQ=255)                                                                                     ctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATGcc              >  3:164554‑M2/13‑101 (MQ=255)                                                                                      tgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATGCCt             <  1:82141‑M2/90‑1 (MQ=255)                                                                                         cgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATGCCtgtg          <  3:1066791‑M2/93‑1 (MQ=255)                                                                                                 cATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATGCCTGTGGCCAGGTa  >  3:1527545/1‑101 (MQ=255)                                                                                                 |                                                                                                     AGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATGCCTGTGGCCAGGTA  >  NC_007779/2178086‑2178282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑