| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_007779 | 1,980,209 | Δ1,199 bp | insH | insH | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 1980209–1981407 | 1981407 | 1–1199 | 17 [0] | [0] 17 | insH | insH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | = 1980208 | 0 (0.000) | 15 (0.340) | 14/190 | 1.7 | 100% | intergenic (‑288/+147) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein |
| ? | NC_007779 | 1981408 = | 0 (0.000) | intergenic (‑37/‑482) | insH/yecG | IS5 element protein/universal stress protein | |||||
GTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA > NC_007779/1981309‑1981507 | gacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaaCa > 2:106037‑M2/100‑101 (MQ=255) tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaaCATAAATGta < 1:293153‑M2/10‑1 (MQ=255) tgtaatcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaaCATAAATGta > 1:1540960‑M2/92‑101 (MQ=255) ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaaCATAAATGTATAAGTCATACt > 1:699033‑M2/81‑101 (MQ=255) atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaaCATAAATGTAGANGTCATACTTTTGTTTTgg < 4:103845‑M2/31‑1 (MQ=255) tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTggg > 3:291024‑M2/70‑101 (MQ=255) acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGgt < 3:1556895‑M2/33‑1 (MQ=255) gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTTGTTGTATTTCAATCTTTTaaa < 4:105929‑M2/51‑1 (MQ=255) gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa > 3:1158846‑M2/51‑101 (MQ=255) gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa > 3:58939‑M2/51‑101 (MQ=255) tcaataatgcgtgatgcagatcacacaaaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtt < 3:1052054‑M2/56‑1 (MQ=255) aatgcgtgatgcagatcacacaaaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg < 3:170498‑M2/61‑1 (MQ=255) atgcgtgatgcagatcacacaaaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc > 2:83080‑M2/40‑101 (MQ=255) cagatcacacaaaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca > 1:590377‑M2/30‑101 (MQ=255) gatcacacaaaacactcaattacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag < 1:529644‑M2/74‑1 (MQ=255) aaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaa > 1:229056‑M2/3‑101 (MQ=255) aCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa > 1:310127‑M2/2‑101 (MQ=255) | GTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA > NC_007779/1981309‑1981507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |