| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_007779 | 654,214 | Δ1,199 bp | insH | insH | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 654214–655411 | 655412 | 2–1199 | 28 [0] | [0] 28 | insH | insH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | = 654213 | 0 (0.000) | 24 (0.540) | 24/190 | 0.8 | 100% | intergenic (+448/‑68) | citB/insH | DNA‑binding response regulator in two‑component regulatory system with citA/IS5 element protein |
| ? | NC_007779 | 655413 = | 0 (0.000) | intergenic (+152/‑1566) | insH/crcA | IS5 element protein/palmitoyl transferase for Lipid A | |||||
CAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTC > NC_007779/655314‑655512 | cattgtcagaatcaccaataccagcatcaggatgatactcgccgaaccaaacgaggtagcgatagaaatcagactttgaataaagccgatggtgctaagcc < 3:461866‑M2/2‑1 (MQ=255) tgtcagaatcaccaataccagcatcaggatgatactcgccgaaccaaacgaggtagcgatagaaatcagactttgaataaagccgatggtgctaagCCCCt < 3:1078996‑M2/5‑1 (MQ=255) gtcagaatcaccaataccagcatcaggatgatactcgccgaaccaaacgaggtagcgatagaaatcagactttgaataaagccgatggtgctaagCCCCTg < 1:1393505‑M2/6‑1 (MQ=255) taccagcatcaggatgatactcgccgaaccaaacgaggtagcgatagaaatcagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAg > 3:118294‑M2/82‑101 (MQ=255) accagcatcaggatgatactcgccgaaccaaacgaggtagcgatagaaatcagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAGc < 3:31887‑M2/21‑1 (MQ=255) caggatgatactcgccgaaccaaacgaggtagcgatagaaatcagactttgaataaagccgatggtgctaagCCCCGGAGCGAAGACCCCAGCGGCAACca < 4:82032‑M2/29‑1 (MQ=255) tgatactcgccgaaccaaacgaggtagcgatagaaatcagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCagcagc < 3:719725‑M2/34‑1 (MQ=255) gatactcgccgaaccaaacgaggtagcgatagaaatcagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAgcagca > 1:108949‑M2/67‑101 (MQ=255) ctcgccgaaccaaacgaggtagcgatagaaatcagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATcac < 1:397446‑M2/39‑1 (MQ=255) cgccgaaccaaacgaggtagcgatagaaatcagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATcacca > 2:22957‑M2/61‑101 (MQ=255) ccgaaccaaacgaggtagcgatagaaatcagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACg < 1:850364‑M2/43‑1 (MQ=255) cgaaccaaacgaggtagcgatagaaatcagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGt < 3:636262‑M2/44‑1 (MQ=255) ccaaacgaggtagcgatagaaatcagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGc < 3:370253‑M2/48‑1 (MQ=255) acgaggtagcgatagaaatcagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAAc < 3:361503‑M2/52‑1 (MQ=255) gtagcgatagaaatcagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATc > 3:798668‑M2/45‑101 (MQ=255) cgatagaaatcagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGcc > 3:775377‑M2/41‑101 (MQ=255) tagaaatcagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATc < 3:252050‑M2/64‑1 (MQ=255) gaaatcagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATccc < 3:213328‑M2/66‑1 (MQ=255) cagactttgaataaagccgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGAt > 3:1604905‑M2/31‑101 (MQ=255) aaagccgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTcca > 1:1566916‑M2/19‑101 (MQ=255) cgatggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTccagacca > 2:37903‑M2/14‑101 (MQ=255) atggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTccagaccaga < 3:996811‑M2/90‑1 (MQ=255) tggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCagag > 3:285229‑M2/11‑101 (MQ=255) ggtgctaagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAgaga > 3:820165‑M2/10‑101 (MQ=255) taagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACt > 3:234086‑M2/5‑101 (MQ=255) taagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACt > 4:137411‑M2/5‑101 (MQ=255) aagCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACtt > 1:974301‑M2/4‑101 (MQ=255) gCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTc < 3:449521‑M2/100‑1 (MQ=255) | CAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCCCCTGAGCGAATACCCCAGCGGCAACCAGCAGCATCACCACGTTAGCAAACGCATCTGCCATCCCGCGATAAGCCACTTCCAGACCAGAGAAAACTTTC > NC_007779/655314‑655512 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |