Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_007779 3,746,911 Δ1,199 bp insH insH

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_007779 3746911–3748105 3748109 5–1199 49 [0] [0] 48 insH insH

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 = 37469100 (0.000)46 (1.030) 37/192 0.2 100% intergenic (‑508/‑69) mdtL/insH multidrug efflux system protein/IS5 element protein
?NC_007779 3748110 = 0 (0.000)intergenic (+151/+961) insH/tnaA IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent

AACGCCCGCCGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTG  >  NC_007779/3746812‑3747009
                                                                                                  |                                                                                                   
aaCGCCCGCCGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAAATGGCAACAGCTAAGTTAGtg                                                                                                   >  1:252912‑M1/1‑99 (MQ=255)
  cgcccgccGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaa                                                                                                 >  1:1023730‑M1/1‑97 (MQ=255)
       gccgTGGGAGTTNTNNNNNTTNAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacacca                                                                                            >  4:102225‑M1/1‑92 (MQ=255)
        ccgTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccag                                                                                           <  1:887484‑M1/101‑11 (MQ=255)
        ccgTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccag                                                                                           <  1:31805‑M1/101‑11 (MQ=255)
          gTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagca                                                                                         >  1:302025‑M1/1‑89 (MQ=255)
          gTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagca                                                                                         >  1:568212‑M1/1‑89 (MQ=255)
           tGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcag                                                                                        <  2:35577‑M1/101‑14 (MQ=255)
            gggAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcagg                                                                                       <  1:536882‑M1/101‑15 (MQ=255)
                gTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaa                                                                                   >  3:409424‑M1/1‑83 (MQ=255)
                gTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaa                                                                                   >  3:363712‑M1/1‑83 (MQ=255)
                      aaTCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcga                                                                             >  1:1394063‑M1/1‑77 (MQ=255)
                      aaTCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcga                                                                             <  3:594148‑M1/101‑25 (MQ=255)
                            aaaCAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgc                                                                       >  3:1000395‑M1/1‑71 (MQ=255)
                               cAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgt                                                                    >  3:607139‑M1/1‑68 (MQ=255)
                                aGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtg                                                                   <  1:605513‑M1/101‑35 (MQ=255)
                                aGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtg                                                                   <  1:145672‑M1/101‑35 (MQ=255)
                                aGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgagaattccgtg                                                                   <  4:22191‑M1/101‑35 (MQ=255)
                                  gTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgct                                                                 >  3:1415461‑M1/1‑65 (MQ=255)
                                         aGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggt                                                          <  1:1435838‑M1/101‑44 (MQ=255)
                                           aTAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgc                                                        >  3:1520922‑M1/1‑56 (MQ=255)
                                                 gAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgagga                                                  >  1:1318584‑M1/1‑50 (MQ=255)
                                                  aacaacCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaa                                                 >  3:414011‑M1/1‑49 (MQ=255)
                                                  aacaacCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaa                                                 >  3:378245‑M1/1‑49 (MQ=255)
                                                      acCCCAGCGCGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgat                                             >  4:60264‑M1/1‑45 (MQ=255)
                                                        cccAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgattt                                           <  2:135890‑M1/101‑59 (MQ=255)
                                                        cccAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgattt                                           <  2:135829‑M1/101‑59 (MQ=255)
                                                          cAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttca                                         >  3:425853‑M1/1‑41 (MQ=255)
                                                           aGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcac                                        <  3:1033530‑M1/101‑62 (MQ=255)
                                                             cGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcacca                                      <  4:62155‑M1/101‑64 (MQ=255)
                                                             cGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcacca                                      >  2:111474‑M1/1‑38 (MQ=255)
                                                             cGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcacca                                      <  3:1546217‑M1/101‑64 (MQ=255)
                                                               tGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagc                                    >  1:1303918‑M1/1‑36 (MQ=255)
                                                               tGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagc                                    <  2:47899‑M1/101‑66 (MQ=255)
                                                                gACAACAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcg                                   <  3:254321‑M1/101‑67 (MQ=255)
                                                                  cacCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaa                                 <  1:19415‑M1/101‑69 (MQ=255)
                                                                  cacCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaa                                 >  3:1386715‑M1/1‑33 (MQ=255)
                                                                       aaGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaac                            >  1:716858‑M1/1‑28 (MQ=255)
                                                                         gaacgaacTGGCAACAGCTAAGTTAGagaacaccagcgggcaaaactcgataatgccntgctgtttggtgccgaggaacgatttcaccagcgantcaacgt                          <  3:815943‑M1/101‑76 (MQ=255)
                                                                         gaacgaacTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgcagtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgt                          >  1:510039‑M1/1‑26 (MQ=255)
                                                                          aacgaacTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgtt                         <  1:1291749‑M1/101‑77 (MQ=255)
                                                                           acgaacTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttg                        <  2:102332‑M1/101‑78 (MQ=255)
                                                                              aacTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccg                     >  1:9221‑M1/1‑21 (MQ=255)
                                                                                      aCAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacagaaccgccagagga             <  4:149554‑M1/101‑89 (MQ=255)
                                                                                      aCAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaagcaacgttgccgccggagga             <  4:110805‑M1/101‑89 (MQ=255)
                                                                                       cAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgaggag            <  1:97824‑M1/101‑90 (MQ=255)
                                                                                       cAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgaggag            >  3:1202899‑M1/1‑12 (MQ=255)
                                                                                                 agagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgaggagataatcgcct  <  1:612806‑M1/101‑100 (MQ=255)
                                                                                                 agagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgaggagataatcgcct  >  3:1240091‑M1/1‑2 (MQ=255)
                                                                                                  |                                                                                                   
AACGCCCGCCGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTG  >  NC_007779/3746812‑3747009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: