| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_007779 | 1,980,209 | Δ1,199 bp | insH | insH | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 1980209–1981407 | 1981407 | 1–1199 | 17 [0] | [0] 17 | insH | insH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | = 1980208 | 0 (0.000) | 15 (0.340) | 14/190 | 1.7 | 100% | intergenic (‑288/+147) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein |
| ? | NC_007779 | 1981408 = | 0 (0.000) | intergenic (‑37/‑482) | insH/yecG | IS5 element protein/universal stress protein | |||||
GACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAG > NC_007779/1980110‑1980308 | gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAca > 2:106037‑M1/1‑99 (MQ=255) tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAcataaatgta < 1:293153‑M1/101‑11 (MQ=255) tGTAATCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAcataaatgta > 1:1540960‑M1/1‑91 (MQ=255) cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAcataaatgtataagtcatact > 1:699033‑M1/1‑80 (MQ=255) aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAcataaatgtagangtcatacttttgttttgg < 4:103845‑M1/101‑32 (MQ=255) tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAcataaatgtataagtcatacttttgttttggg > 3:291024‑M1/1‑69 (MQ=255) aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAcataaatgtataagtcatacttttgttttgggt < 3:1556895‑M1/101‑34 (MQ=255) gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAcataaatgtataagtcatacttttgtttttgttgtatttcaatcttttaaa < 4:105929‑M1/101‑52 (MQ=255) gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAcataaatgtataagtcatacttttgttttgggtgtatttcaatctgttaaa > 3:1158846‑M1/1‑50 (MQ=255) gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAcataaatgtataagtcatacttttgttttgggtgtatttcaatctgttaaa > 3:58939‑M1/1‑50 (MQ=255) tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAcataaatgtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtt < 3:1052054‑M1/101‑57 (MQ=255) aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAcataaatgtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg < 3:170498‑M1/101‑62 (MQ=255) atGCGTGATGCAGATCACACAAAACACTCAATTACTTAAcataaatgtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc > 2:83080‑M1/1‑39 (MQ=255) cAGATCACACAAAACACTCAATTACTTAAcataaatgtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca > 1:590377‑M1/1‑29 (MQ=255) gATCACACAAAACACTCAATTACTTAAcataaatgtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag < 1:529644‑M1/101‑75 (MQ=255) aacataaatgtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa > 1:229056‑M1/1‑2 (MQ=255) acataaatgtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa > 1:310127‑M1/1‑1 (MQ=255) | GACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAG > NC_007779/1980110‑1980308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |