| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_007779 | 654,214 | Δ1,199 bp | insH | insH | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 654214–655411 | 655412 | 2–1199 | 28 [0] | [0] 28 | insH | insH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | = 654213 | 0 (0.000) | 24 (0.540) | 24/190 | 0.8 | 100% | intergenic (+448/‑68) | citB/insH | DNA‑binding response regulator in two‑component regulatory system with citA/IS5 element protein |
| ? | NC_007779 | 655413 = | 0 (0.000) | intergenic (+152/‑1566) | insH/crcA | IS5 element protein/palmitoyl transferase for Lipid A | |||||
CATTGTCAGAATCACCAATACCAGCATCAGGATGATACTCGCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAA > NC_007779/654115‑654313 | cATTGTCAGAATCACCAATACCAGCATCAGGATGATACTCGCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcc < 3:461866‑M1/101‑3 (MQ=255) tGTCAGAATCACCAATACCAGCATCAGGATGATACTCGCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccct < 3:1078996‑M1/101‑6 (MQ=255) gTCAGAATCACCAATACCAGCATCAGGATGATACTCGCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctg < 1:1393505‑M1/101‑7 (MQ=255) tACCAGCATCAGGATGATACTCGCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccag > 3:118294‑M1/1‑81 (MQ=255) aCCAGCATCAGGATGATACTCGCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccagc < 3:31887‑M1/101‑22 (MQ=255) cAGGATGATACTCGCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGccccggagcgaagaccccagcggcaacca < 4:82032‑M1/101‑30 (MQ=255) tgatACTCGCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagc < 3:719725‑M1/101‑35 (MQ=255) gatACTCGCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagca > 1:108949‑M1/1‑66 (MQ=255) cTCGCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcac < 1:397446‑M1/101‑40 (MQ=255) cGCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcacca > 2:22957‑M1/1‑60 (MQ=255) ccGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacg < 1:850364‑M1/101‑44 (MQ=255) cGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgt < 3:636262‑M1/101‑45 (MQ=255) ccAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagc < 3:370253‑M1/101‑49 (MQ=255) aCGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaac < 3:361503‑M1/101‑53 (MQ=255) gTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaacgcatc > 3:798668‑M1/1‑44 (MQ=255) cGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaacgcatctgcc > 3:775377‑M1/1‑40 (MQ=255) tAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaacgcatctgccatc < 3:252050‑M1/101‑65 (MQ=255) gAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaacgcatctgccatccc < 3:213328‑M1/101‑67 (MQ=255) cAGACTTTGAATAAAGCCGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaacgcatctgccatcccgcgat > 3:1604905‑M1/1‑30 (MQ=255) aaaGCCGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaacgcatctgccatcccgcgataagccacttcca > 1:1566916‑M1/1‑18 (MQ=255) cGATGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaacgcatctgccatcccgcgataagccacttccagacca > 2:37903‑M1/1‑13 (MQ=255) aTGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaacgcatctgccatcccgcgataagccacttccagaccaga < 3:996811‑M1/101‑91 (MQ=255) tGGTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaacgcatctgccatcccgcgataagccacttccagaccagag > 3:285229‑M1/1‑10 (MQ=255) ggTGCTAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaacgcatctgccatcccgcgataagccacttccagaccagaga > 3:820165‑M1/1‑9 (MQ=255) tAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaacgcatctgccatcccgcgataagccacttccagaccagagaaaact > 3:234086‑M1/1‑4 (MQ=255) tAAGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaacgcatctgccatcccgcgataagccacttccagaccagagaaaact > 4:137411‑M1/1‑4 (MQ=255) aaGcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaacgcatctgccatcccgcgataagccacttccagaccagagaaaactt > 1:974301‑M1/1‑3 (MQ=255) gcccctgagcgaataccccagcggcaaccagcagcatcaccacgttagcaaacgcatctgccatcccgcgataagccacttccagaccagagaaaactttc < 3:449521‑M1/101‑101 (MQ=255) | CATTGTCAGAATCACCAATACCAGCATCAGGATGATACTCGCCGAACCAAACGAGGTAGCGATAGAAATCAGACTTTGAATAAAGCCGATGGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAA > NC_007779/654115‑654313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |