New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 3750590	0 (0.000)	27 (0.600)	21/192	1.0	100%	intergenic (‑104/‑69)	tnaA/insH	tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein
	?	NC_007779	3751790 =	0 (0.000)					intergenic (+151/+116)	insH/tnaC	IS5 element protein/tryptophanase leader peptide

TTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCGGTTTGGCTCTGG  >  NC_007779/3751690‑3751884                                                                                                     |                                                                                               tactccttcatttattttacttcccgtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaa                                                                                                >  4:131186‑M2/101‑101 (MQ=255) taatccttcatttattttaattacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaa                                                                                                >  4:49477‑M2/101‑101 (MQ=255)        tcatttattttaattacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGta                                                                                         >  3:678162‑M2/94‑101 (MQ=255)             tattttaattacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaataa                                                                                    <  1:651223‑M2/13‑1 (MQ=255)                 ttaattacagtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACga                                                                                >  1:1233950‑M2/85‑101 (MQ=255)                         agtgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAc                                                                        >  3:1500238‑M2/77‑101 (MQ=255)                           tgatccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCt                                                                      >  3:115521‑M2/75‑101 (MQ=255)                              tccctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTg                                                                   >  1:884102‑M2/72‑101 (MQ=255)                                cctgtgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCa                                                                 >  1:1184780‑M2/70‑101 (MQ=255)                                         attacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACATTTGCAAAAGGCaaa                                                        >  3:1603927‑M2/61‑101 (MQ=255)                                          ttacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCaaaa                                                       <  2:131307‑M2/42‑1 (MQ=255)                                          ttacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCaaaa                                                       <  2:49535‑M2/42‑1 (MQ=255)                                                    tataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGAtata                                             <  1:674519‑M2/52‑1 (MQ=255)                                                           attaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaaca                                      >  1:1173747‑M2/43‑101 (MQ=255)                                                           attaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaaca                                      >  3:940371‑M2/43‑101 (MQ=255)                                                                  cgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAAGGAAGAGAGAGCAAACAAAGAGAt                               <  4:14727‑M2/66‑1 (MQ=255)                                                                         tatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTg                        >  1:109895‑M2/29‑101 (MQ=255)                                                                         tatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTg                        <  1:671512‑M2/73‑1 (MQ=255)                                                                         tatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTg                        <  2:71156‑M2/73‑1 (MQ=255)                                                                         tatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTg                        <  1:329412‑M2/73‑1 (MQ=255)                                                                            atatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAAt                     <  3:753210‑M2/76‑1 (MQ=255)                                                                                  aagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATc               >  3:1233630‑M2/20‑101 (MQ=255)                                                                                  aagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATc               >  1:1232159‑M2/20‑101 (MQ=255)                                                                                     caccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACTAATAGATCACATTGAATCTAATCGGt            >  3:430054‑M2/17‑101 (MQ=255)                                                                                         atcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCGGTTTgg        >  3:1352139‑M2/13‑101 (MQ=255)                                                                                         atcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCGGTTTgg        <  3:1524533‑M2/89‑1 (MQ=255)                                                                                               tactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCGGTTTGGCTCTgg  >  3:580137‑M2/7‑101 (MQ=255)                                                                                                     |                                                                                               TTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACATTGAATCTAATCGGTTTGGCTCTGG  >  NC_007779/3751690‑3751884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.