Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_007779 | 2,176,983 | Δ1,199 bp | insH | insH |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_007779 | 2176983–2178177 | 2178181 | 5–1199 | 36 [0] | [0] 37 | insH | insH |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_007779 | = 2176982 | 0 (0.000) | 36 (0.820) | 32/190 | 0.4 | 100% | intergenic (‑281/‑69) | gatB/insH | PTS system galactitol‑specific transporter subunit IIB/IS5 element protein |
? | NC_007779 | 2178182 = | 0 (0.000) | intergenic (+151/+211) | insH/gatZ | IS5 element protein/D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
AGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATGCCTGTGGCCAGGTA > NC_007779/2178086‑2178282 | caataaccaacgataccgccacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGa < 1:1021546‑M2/5‑1 (MQ=255) ataaccaccgataccgccacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAAt > 4:14968‑M2/95‑101 (MQ=255) taaccaacgataccgccacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctaacgacttagCATGAATc < 1:511898‑M2/8‑1 (MQ=255) ccaacgataccgccacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGcc < 3:463303‑M2/11‑1 (MQ=255) cgataccgccacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTcac < 1:1560884‑M2/15‑1 (MQ=255) cgataccgccacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTcac < 1:871590‑M2/15‑1 (MQ=255) gccacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCgg < 1:59057‑M2/22‑1 (MQ=255) cacgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTa > 1:592178‑M2/78‑101 (MQ=255) cgtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTAtt < 1:1131039‑M2/26‑1 (MQ=255) gtcgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTg < 3:80207‑M2/27‑1 (MQ=255) cgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCa > 1:675617‑M2/73‑101 (MQ=255) cgttatcatcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCa < 3:625316‑M2/29‑1 (MQ=255) catcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCg > 3:94157‑M2/67‑101 (MQ=255) tcatccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGtg > 1:90992‑M2/65‑101 (MQ=255) catccgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGtgc < 4:35144‑M2/38‑1 (MQ=255) cgcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTgctgct > 3:1348976‑M2/60‑101 (MQ=255) gcttgctgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTc < 3:1223646‑M2/43‑1 (MQ=255) tgaaaatgaactttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCAt < 1:278613‑M2/49‑1 (MQ=255) ctttatttgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTa < 3:1568622‑M2/59‑1 (MQ=255) tgttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAAtt < 1:1374916‑M2/66‑1 (MQ=255) ttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCt > 1:323092‑M2/34‑101 (MQ=255) ttggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCt < 3:1416125‑M2/68‑1 (MQ=255) ggccttaacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGc > 3:1438307‑M2/32‑101 (MQ=255) aacagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTACCCCGGTAGGGAATTCTGCttctca < 1:387766‑M2/76‑2 (MQ=255) cagataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTgg < 3:1034593‑M2/78‑1 (MQ=255) agataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGc > 2:42495‑M2/23‑101 (MQ=255) gataaatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCa < 3:826666‑M2/80‑1 (MQ=255) aaatggctgatgacttcgCCTGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAAtt > 4:72725‑M2/19‑101 (MQ=255) aatggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTa > 1:247984‑M2/18‑101 (MQ=255) aatggcggacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTa > 1:1505625‑M2/18‑101 (MQ=255) tggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAAt > 1:93007‑M2/16‑101 (MQ=255) tggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAAt > 1:742851‑M2/16‑101 (MQ=255) ggctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATg < 1:622839‑M2/87‑1 (MQ=255) ctgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATGcc > 3:164554‑M2/13‑101 (MQ=255) tgacgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATGCCt < 1:82141‑M2/90‑1 (MQ=255) cgacttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATGCCtgtg < 3:1066791‑M2/93‑1 (MQ=255) cATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATGCCTGTGGCCAGGTa > 3:1527545/1‑101 (MQ=255) | AGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATGCCTGTGGCCAGGTA > NC_007779/2178086‑2178282 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |