Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_007779 | 1,105,622 | Δ1,336 bp | insD–insC | insD, insC |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_007779 | 1105622–1106953 | 1106957 | 5–1336 | 23 [0] | [0] 26 | insD–insC | insD,insC |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_007779 | = 1105621 | 0 (0.000) | 21 (0.480) | 17/188 | 1.3 | 100% | intergenic (+87/+12) | csgC/insD | curli production protein/IS2 element protein |
? | NC_007779 | 1106958 = | 0 (0.000) | intergenic (‑97/‑33) | insC/ymdA | IS2 element protein/hypothetical protein |
TCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGG > NC_007779/1106866‑1107058 | cttaatttgttgaaatatcgagcataagatgaatctggagagaatggtctgctgcgaatcagccaacctgaaagtatggataacacaaccctCAAGGATGa < 3:514275‑M2/9‑1 (MQ=255) tgcaatatcgagcataagatgaatctggagagaatggtctgctgcgaatcagccaacctgaaagaatggataacacaaccctCAAGGATGACTAATCATTg > 1:1537997‑M2/83‑101 (MQ=255) cataagatgaatctggagagaatggtctgctgcgaatcagccaacctgaaagtatggataacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAAt > 1:274132‑M2/71‑101 (MQ=255) aagatgaatctggagagaatggtctgctgcgaatcagccaacctgaaagtatggataacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATaaa < 3:318473‑M2/34‑1 (MQ=255) aatctggagagaatggtctgctgcgaatcagccaacctgaaagtatggataacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCa < 3:324380‑M2/40‑1 (MQ=255) atctggagagaatggtctgctgcgaatcagccaacctgaaagtatggataacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAg > 3:767117‑M2/61‑101 (MQ=255) gaatggtctgctgcgaatcagccatcctgaaagtatggataacacacccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCtttttt < 1:817342‑M2/50‑1 (MQ=255) aatggtctgctgcgaatcagccaacctgaaagtatggataacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTa > 1:819193‑M2/51‑101 (MQ=255) tggtctgctgcgaatcagccaacctgaaagtatggataacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTaaa < 1:1140947‑M2/53‑1 (MQ=255) atcagccaacctgaaagtatggataacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTc > 3:492922‑M2/36‑101 (MQ=255) ccaacctgaaagtatggataacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAg < 1:32729‑M2/71‑1 (MQ=255) caacctgaaagtatggataacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAgt > 1:495890‑M2/30‑101 (MQ=255) aacctgaaagtatggataacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAgtt < 4:89961‑M2/73‑1 (MQ=255) aacctgaaagtatggataacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAgtt < 4:7231‑M2/73‑1 (MQ=255) acctgaaagtatggataacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAgttt > 1:1413017‑M2/28‑101 (MQ=255) aagtatggataacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGttttt < 1:498537‑M2/80‑1 (MQ=255) tccgatcttaacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATTCTCGGCAGTTTGtttttt < 4:105223‑M2/81‑1 (MQ=255) gtatggatcaccccaccctCCCGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTc > 4:20583‑M2/20‑101 (MQ=255) ggataacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCttt < 1:135177‑M2/86‑1 (MQ=255) taacacaaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGgcagtttgttttttagatcgga > 2:105331‑M2/13‑93 (MQ=255) caaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCa > 1:52350‑M2/8‑101 (MQ=255) aaccctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCAt < 1:262994‑M2/95‑1 (MQ=255) accctCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCAtt < 1:150235‑M2/96‑1 (MQ=255) cAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTgg < 4:138475/101‑1 (MQ=255) cAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTgg > 3:1162388/1‑101 (MQ=255) cAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTgg > 3:563125/1‑101 (MQ=255) | TCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGG > NC_007779/1106866‑1107058 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |