Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_007779 | 3,746,911 | Δ1,199 bp | insH | insH |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_007779 | 3746911–3748105 | 3748109 | 5–1199 | 49 [0] | [0] 48 | insH | insH |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_007779 | = 3746910 | 0 (0.000) | 46 (1.030) | 37/192 | 0.2 | 100% | intergenic (‑508/‑69) | mdtL/insH | multidrug efflux system protein/IS5 element protein |
? | NC_007779 | 3748110 = | 0 (0.000) | intergenic (+151/+961) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
AACGCCCGCCGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTG > NC_007779/3746812‑3747009 | aaCGCCCGCCGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAAATGGCAACAGCTAAGTTAGtg > 1:252912‑M1/1‑99 (MQ=255) cgcccgccGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaa > 1:1023730‑M1/1‑97 (MQ=255) gccgTGGGAGTTNTNNNNNTTNAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacacca > 4:102225‑M1/1‑92 (MQ=255) ccgTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccag < 1:887484‑M1/101‑11 (MQ=255) ccgTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccag < 1:31805‑M1/101‑11 (MQ=255) gTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagca > 1:302025‑M1/1‑89 (MQ=255) gTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagca > 1:568212‑M1/1‑89 (MQ=255) tGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcag < 2:35577‑M1/101‑14 (MQ=255) gggAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcagg < 1:536882‑M1/101‑15 (MQ=255) gTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaa > 3:409424‑M1/1‑83 (MQ=255) gTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaa > 3:363712‑M1/1‑83 (MQ=255) aaTCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcga > 1:1394063‑M1/1‑77 (MQ=255) aaTCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcga < 3:594148‑M1/101‑25 (MQ=255) aaaCAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgc > 3:1000395‑M1/1‑71 (MQ=255) cAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgt > 3:607139‑M1/1‑68 (MQ=255) aGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtg < 1:605513‑M1/101‑35 (MQ=255) aGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtg < 1:145672‑M1/101‑35 (MQ=255) aGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgagaattccgtg < 4:22191‑M1/101‑35 (MQ=255) gTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgct > 3:1415461‑M1/1‑65 (MQ=255) aGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggt < 1:1435838‑M1/101‑44 (MQ=255) aTAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgc > 3:1520922‑M1/1‑56 (MQ=255) gAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgagga > 1:1318584‑M1/1‑50 (MQ=255) aacaacCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaa > 3:414011‑M1/1‑49 (MQ=255) aacaacCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaa > 3:378245‑M1/1‑49 (MQ=255) acCCCAGCGCGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgat > 4:60264‑M1/1‑45 (MQ=255) cccAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgattt < 2:135890‑M1/101‑59 (MQ=255) cccAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgattt < 2:135829‑M1/101‑59 (MQ=255) cAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttca > 3:425853‑M1/1‑41 (MQ=255) aGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcac < 3:1033530‑M1/101‑62 (MQ=255) cGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcacca < 4:62155‑M1/101‑64 (MQ=255) cGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcacca > 2:111474‑M1/1‑38 (MQ=255) cGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcacca < 3:1546217‑M1/101‑64 (MQ=255) tGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagc > 1:1303918‑M1/1‑36 (MQ=255) tGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagc < 2:47899‑M1/101‑66 (MQ=255) gACAACAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcg < 3:254321‑M1/101‑67 (MQ=255) cacCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaa < 1:19415‑M1/101‑69 (MQ=255) cacCAAAGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaa > 3:1386715‑M1/1‑33 (MQ=255) aaGAACGAACTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaac > 1:716858‑M1/1‑28 (MQ=255) gaacgaacTGGCAACAGCTAAGTTAGagaacaccagcgggcaaaactcgataatgccntgctgtttggtgccgaggaacgatttcaccagcgantcaacgt < 3:815943‑M1/101‑76 (MQ=255) gaacgaacTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgcagtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgt > 1:510039‑M1/1‑26 (MQ=255) aacgaacTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgtt < 1:1291749‑M1/101‑77 (MQ=255) acgaacTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttg < 2:102332‑M1/101‑78 (MQ=255) aacTGGCAACAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccg > 1:9221‑M1/1‑21 (MQ=255) aCAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacagaaccgccagagga < 4:149554‑M1/101‑89 (MQ=255) aCAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaagcaacgttgccgccggagga < 4:110805‑M1/101‑89 (MQ=255) cAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgaggag < 1:97824‑M1/101‑90 (MQ=255) cAGCTAAGTTAGagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgaggag > 3:1202899‑M1/1‑12 (MQ=255) agagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgaggagataatcgcct < 1:612806‑M1/101‑100 (MQ=255) agagaacaccagcaggcaaaactcgataatgccgtgctgtttggtgccgaggaacgatttcaccagcgaatcaacgttgccgcctgaggagataatcgcct > 3:1240091‑M1/1‑2 (MQ=255) | AACGCCCGCCGTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTG > NC_007779/3746812‑3747009 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |