Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_007779 | 1,105,622 | Δ1,336 bp | insD–insC | insD, insC |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_007779 | 1105622–1106953 | 1106957 | 5–1336 | 23 [0] | [0] 26 | insD–insC | insD,insC |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_007779 | = 1105621 | 0 (0.000) | 21 (0.480) | 17/188 | 1.3 | 100% | intergenic (+87/+12) | csgC/insD | curli production protein/IS2 element protein |
? | NC_007779 | 1106958 = | 0 (0.000) | intergenic (‑97/‑33) | insC/ymdA | IS2 element protein/hypothetical protein |
CTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCA > NC_007779/1105530‑1105717 | cTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTcaaggatga < 3:514275‑M1/101‑10 (MQ=255) tgcaatatCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGAATGGATAACACAACCCTcaaggatgactaatcattg > 1:1537997‑M1/4‑82 (MQ=255) cATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTcaaggatgactaatcattgaggaaatagaat > 1:274132‑M1/1‑70 (MQ=255) aaGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTcaaggatgactaatcattgaggaaatagaataaa < 3:318473‑M1/101‑35 (MQ=255) aaTCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTcaaggatgactaatcattgaggaaatagaataaatgttca < 3:324380‑M1/101‑41 (MQ=255) aTCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTcaaggatgactaatcattgaggaaatagaataaatgttcag > 3:767117‑M1/1‑60 (MQ=255) gaATGGTCTGCTGCGAATCAGCCATCCTGAAAGTATGGATAACACACCCCTcaaggatgactaatcattgaggaaatagaataaatgttcagacctttttt < 1:817342‑M1/101‑51 (MQ=255) aaTGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTcaaggatgactaatcattgaggaaatagaataaatgttcagacctttttta > 1:819193‑M1/1‑50 (MQ=255) tGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTcaaggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaa < 1:1140947‑M1/101‑54 (MQ=255) aTCAGCCAACCTGAAAGTATGGATAACACAACCCTcaaggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaactctcttatgctc > 3:492922‑M1/1‑35 (MQ=255) ccAACCTGAAAGTATGGATAACACAACCCTcaaggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaactctcttatgctcggcag < 1:32729‑M1/101‑72 (MQ=255) cAACCTGAAAGTATGGATAACACAACCCTcaaggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaactctcttatgctcggcagt > 1:495890‑M1/1‑29 (MQ=255) aaCCTGAAAGTATGGATAACACAACCCTcaaggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaactctcttatgctcggcagtt < 4:89961‑M1/101‑74 (MQ=255) aaCCTGAAAGTATGGATAACACAACCCTcaaggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaactctcttatgctcggcagtt < 4:7231‑M1/101‑74 (MQ=255) aCCTGAAAGTATGGATAACACAACCCTcaaggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaactctcttatgctcggcagttt > 1:1413017‑M1/1‑27 (MQ=255) aaGTATGGATAACACAACCCTcaaggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaactctcttatgctcggcagtttgttttt < 1:498537‑M1/101‑81 (MQ=255) tccgatcttaacacaacCCTcaaggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaactctcttattctcggcagtttgtttttt < 4:105223‑M1/93‑82 (MQ=255) gTATGGATCACCCCACCCTcccggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaactctcttatgctcggcagtttgttttttc > 4:20583‑M1/1‑19 (MQ=255) ggATAACACAACCCTcaaggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaactctcttatgctcggcagtttgttttttccttt < 1:135177‑M1/101‑87 (MQ=255) tAACACAACCCTcaaggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaactctcttatgctcggcagtttgttttttagatcgga > 2:105331‑M1/1‑12 (MQ=255) caACCCTcaaggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaactctcttatgctcggcagtttgttttttccttttattgcca > 1:52350‑M1/1‑7 (MQ=255) aaCCCTcaaggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaactctcttatgctcggcagtttgttttttccttttattgccat < 1:262994‑M1/101‑96 (MQ=255) aCCCTcaaggatgactaatcattgaggaaatagaataaatgttcagaccttttttaaactctcttatgctcggcagtttgttttttccttttattgccatt < 1:150235‑M1/101‑97 (MQ=255) | CTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCA > NC_007779/1105530‑1105717 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |