| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | ADP1‑WT | 1,248,192 | Δ1,237 bp | ACIAD1249–[csrA] | ACIAD1249, ACIAD1250, [csrA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ADP1‑WT | 1248192 | 1249428 | 1237 | 36 [0] | [0] 37 | ACIAD1249–[csrA] | ACIAD1249,ACIAD1250,[csrA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ADP1‑WT | = 1248191 | 0 (0.000) | 36 (1.040) | 32/250 | 0.2 | 100% | intergenic (+164/+6) | rnhB/ACIAD1249 | ribonuclease HII/IS1236 transposase protein 2 |
| ? | ADP1‑WT | 1249429 = | 0 (0.000) | coding (175/213 nt) | csrA | carbon storage regulator | |||||
TGCATAATCAATTGCTTGCTGTTTAAATTCAGGACTAAAACGTTTGGCCATTTCTTGGATCTCCAAAGTTAACGTTACGTTATCTTTAGAGGGAAGTACTGTCCATTATTTTGGCTAGGATCACATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGAACCTGATTACCTTTAACACCAAGCACAGTAACACTGACTT > ADP1‑WT/1249306‑1249554 | attagccgctttaatttgggagaaaaattaaaaaataactttaacggttaaaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatcat > 2:458991‑M2/124‑126 (MQ=255) agccgctttaatttgggagaaaaattaaaaaataactttaacggttaaaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCa < 2:250738‑M2/6‑1 (MQ=255) agccgctttaatttgggagaaaaattaaaaaataactttaacggttaaaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCa < 1:44462‑M2/6‑1 (MQ=255) agccgctttaatttgggagaaaaattaaaaaataactttaacggttaaaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCa < 1:28000‑M2/6‑1 (MQ=255) gctttaatttgggagaaaaattaaaaaataactttaacggttaaaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGc < 2:240074‑M2/10‑1 (MQ=255) ctttaatttgggagaaaaattaaaaaataactttaacggttaaaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCa < 1:385077‑M2/11‑1 (MQ=255) gggagaaaaattaaaaaataactttaacggttaaaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCgtgt < 1:231326‑M2/20‑1 (MQ=255) gagaaaaattaaaaaataactttaacggttaaaattattttgtgagtagttatcatcttcaaaagaaggctaataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTg > 2:194717‑M2/105‑126 (MQ=255) aattaaaaaataactttaacggttaaaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACg < 2:244429‑M2/28‑1 (MQ=255) taaaaaataactttaacggttaaaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTg < 2:305876‑M2/31‑1 (MQ=255) ctttaacggttaaaattattttgtgagtagttatcatcttcaaaagaaggctaataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATctct < 1:195011‑M2/41‑1 (MQ=255) aacggttaaaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCAc > 1:265959‑M2/82‑126 (MQ=255) acggttaaaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACg > 1:152616‑M2/81‑126 (MQ=255) ttaaaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGa < 1:459653‑M2/50‑1 (MQ=255) taaaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGaa < 2:311478‑M2/51‑1 (MQ=255) aaaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAAc < 2:260387‑M2/52‑1 (MQ=255) aaattattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACa > 1:152626‑M2/74‑126 (MQ=255) attattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACaga < 2:183021‑M2/55‑1 (MQ=255) attattttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACaga < 2:464884‑M2/55‑1 (MQ=255) attttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGAc < 1:33818‑M2/58‑1 (MQ=255) ttttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGAct > 1:29684‑M2/68‑126 (MQ=255) tttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGActt > 2:68604‑M2/67‑126 (MQ=255) tttgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGActt > 2:370217‑M2/67‑126 (MQ=255) tgtgagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGActtct < 2:265559‑M2/62‑1 (MQ=255) gagtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTc < 2:457895‑M2/65‑1 (MQ=255) agtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCg < 2:76822‑M2/66‑1 (MQ=255) gtagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCgg < 1:84163‑M2/67‑1 (MQ=255) tagttatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGACAAATCTCTTCACGATGAACAGAGACTTCTTTCGGa > 2:98973‑M2/59‑126 (MQ=255) tatcatcttcaaaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCAt > 1:252747‑M2/55‑126 (MQ=255) aaagaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATa < 1:219937‑M2/83‑1 (MQ=255) gaaggctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGa < 1:441539‑M2/86‑1 (MQ=255) gctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATGCGAACCt > 1:160842‑M2/37‑126 (MQ=255) ctgataatcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGAACCTg < 2:29644‑M2/91‑1 (MQ=255) tcttgatctaaatgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGAACCTGATTACCt > 1:245931‑M2/29‑126 (MQ=255) tgttgaagatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGAACCTGATTACCTTTAACACCAAGc > 2:278608‑M2/17‑126 (MQ=255) agatgttcatCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGAACCTGATTACCTTTAACACCAAGCACAGTa < 2:346991‑M2/116‑1 (MQ=255) caTGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGAACCTGATTACCTTTAACACCAAGCACAGTAACACTGACtt > 1:60721/1‑126 (MQ=255) | TGCATAATCAATTGCTTGCTGTTTAAATTCAGGACTAAAACGTTTGGCCATTTCTTGGATCTCCAAAGTTAACGTTACGTTATCTTTAGAGGGAAGTACTGTCCATTATTTTGGCTAGGATCACATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGAACCTGATTACCTTTAACACCAAGCACAGTAACACTGACTT > ADP1‑WT/1249306‑1249554 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |