mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.7 revision b7a44cd89118
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | ADP1‑WT | 321,574 | Δ1,237 bp | ACIAD0320–[ACIAD0323] | ACIAD0320, ACIAD0321, [ACIAD0323] | |
| MC JC | ADP1‑WT | 941,306 | Δ3,549 bp | IS1236‑mediated | ACIAD0952–[ACIAD0959] | ACIAD0952, ACIAD0953, ACIAD0955, ACIAD0956, ACIAD0957, ACIAD0958, [ACIAD0959] |
| MC JC | ADP1‑WT | 1,248,192 | Δ1,237 bp | ACIAD1249–[csrA] | ACIAD1249, ACIAD1250, [csrA] | |
| MC JC | ADP1‑WT | 1,799,601 | Δ1,237 bp | [ACIAD1790]–[ACIAD1794] | [ACIAD1790], ACIAD1791, ACIAD1792, [ACIAD1794] | |
| MC JC | ADP1‑WT | 2,726,455 | Δ1,268 bp | ACIAD2779–ACIAD2782 | ACIAD2779, ACIAD2780, ACIAD2781, ACIAD2782 | |
| RA | pYTK001_with_tdk_kan | 693 | +G | intergenic (–/+1118) | – / ← CamR | –/– |
| RA | pYTK001_with_tdk_kan | 782 | A→G | intergenic (–/+1029) | – / ← CamR | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ADP1‑WT | 1668723 | 1722720 | 53998 | 40 [0] | [0] 36 | ACIAD1664–[quiA] | ACIAD1664,ACIAD1665,ACIAD1666,ACIAD1667,ACIAD1668,ACIAD1669,ACIAD1670,ACIAD1671,ACIAD1672,ACIAD1673,ACIAD1674,ACIAD1675,ACIAD1676,ACIAD1677,ACIAD1678,ACIAD1679,etfD,mucK,caiB,dcaS,ACIAD1685,caiB,dcaR,dcaF,dcaH,dcaC,dcaE,dcaA,dcaK,dcaI,dcaJ,dcaP,ACIAD1698,ACIAD1699,acdB,ACIAD1701,pcaU,pcaI,pcaJ,pcaF,pcaB,pcaD,pcaK,pcaC,pcaH,pcaG,aroD,quiC,quiX,[quiA] |
| * | * | ÷ | pYTK001_with_tdk_kan | 1 | 13 | 13 | NA [0] | [0] 41 | –/CamR | –/– |
| * | * | ÷ | pYTK001_with_tdk_kan | 1689 | 3341 | 1653 | 36 [0] | [0] NA | CamR | CamR |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ADP1‑WT | = 1668722 | 0 (0.000) | 40 (1.190) | 37/250 | 0.0 | 100% | intergenic (‑145/+101) | ACIAD1663/ACIAD1664 | hypothetical protein/phosphatidate cytidylyltransferase |
| ? | pYTK001_with_tdk_kan | 14 = | 0 (0.000) | intergenic (–/+1797) | –/CamR | –/– | |||||
| * | ? | ADP1‑WT | 1722721 = | 0 (0.000) | 36 (1.070) | 30/250 | 0.0 | 100% | coding (1536/2397 nt) | quiA | quinate/shikimate dehydrogenase [pyrroloquinoline‑quinone] (NAD(P)‑independent quinate dehydrogenase) |
| ? | pYTK001_with_tdk_kan | = 1688 | 0 (0.000) | intergenic (–/+123) | –/CamR | –/– | |||||