Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | ADP1‑WT | 1,248,192 | Δ1,237 bp | ACIAD1249–[csrA] | ACIAD1249, ACIAD1250, [csrA] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | ADP1‑WT | 1248192 | 1249428 | 1237 | 36 [0] | [0] 37 | ACIAD1249–[csrA] | ACIAD1249,ACIAD1250,[csrA] |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | ADP1‑WT | = 1248191 | 0 (0.000) | 36 (1.040) | 32/250 | 0.2 | 100% | intergenic (+164/+6) | rnhB/ACIAD1249 | ribonuclease HII/IS1236 transposase protein 2 |
? | ADP1‑WT | 1249429 = | 0 (0.000) | coding (175/213 nt) | csrA | carbon storage regulator |
ATTAGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATTGATCCTAGACAGTATCGTGGACAACAAATCCCTCTAAATTCTTGAAATATTTCTGTTCAAAGGCTTCTGGGCTTAACCAGCCGTTTGTAGAATGTCGTCTGATTCGATTGTAATA > ADP1‑WT/1248069‑1248307 | aTTAGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcat > 2:458991‑M1/1‑123 (MQ=255) aGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgca < 1:28000‑M1/126‑7 (MQ=255) aGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgca < 1:44462‑M1/126‑7 (MQ=255) aGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgca < 2:250738‑M1/126‑7 (MQ=255) gCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgc < 2:240074‑M1/126‑11 (MQ=255) cTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgca < 1:385077‑M1/126‑12 (MQ=255) gggAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgt < 1:231326‑M1/126‑21 (MQ=255) gagaAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTAATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttg > 2:194717‑M1/1‑104 (MQ=255) aaTTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacg < 2:244429‑M1/126‑29 (MQ=255) tAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttg < 2:305876‑M1/126‑32 (MQ=255) cTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTAATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctct < 1:195011‑M1/126‑42 (MQ=255) aaCGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcac > 1:265959‑M1/1‑81 (MQ=255) aCGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacg > 1:152616‑M1/1‑80 (MQ=255) ttAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatga < 1:459653‑M1/126‑51 (MQ=255) tAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaa < 2:311478‑M1/126‑52 (MQ=255) aaaaTTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaac < 2:260387‑M1/126‑53 (MQ=255) aaaTTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaaca > 1:152626‑M1/1‑73 (MQ=255) attattTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacaga < 2:464884‑M1/126‑56 (MQ=255) attattTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacaga < 2:183021‑M1/126‑56 (MQ=255) attTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagac < 1:33818‑M1/126‑59 (MQ=255) ttttGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagact > 1:29684‑M1/1‑67 (MQ=255) tttGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagactt > 2:370217‑M1/1‑66 (MQ=255) tttGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagactt > 2:68604‑M1/1‑66 (MQ=255) tgtgAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttct < 2:265559‑M1/126‑63 (MQ=255) gAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttc < 2:457895‑M1/126‑66 (MQ=255) agtagtTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcg < 2:76822‑M1/126‑67 (MQ=255) gtagtTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcgg < 1:84163‑M1/126‑68 (MQ=255) tagtTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgacaaatctcttcacgatgaacagagacttctttcgga > 2:98973‑M1/1‑58 (MQ=255) tATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcat > 1:252747‑M1/1‑54 (MQ=255) aaaGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcattcacaccaata < 1:219937‑M1/126‑84 (MQ=255) gaagGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcattcacaccaatacga < 1:441539‑M1/126‑87 (MQ=255) gCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcattcacaccaatgcgaacct > 1:160842‑M1/1‑36 (MQ=255) cTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcattcacaccaatacgaacctg < 2:29644‑M1/126‑92 (MQ=255) tCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcattcacaccaatacgaacctgattacct > 1:245931‑M1/1‑28 (MQ=255) tGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcattcacaccaatacgaacctgattacctttaacaccaagc > 2:278608‑M1/1‑16 (MQ=255) aGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcattcacaccaatacgaacctgattacctttaacaccaagcacagta < 2:346991‑M1/126‑117 (MQ=255) | ATTAGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATTGATCCTAGACAGTATCGTGGACAACAAATCCCTCTAAATTCTTGAAATATTTCTGTTCAAAGGCTTCTGGGCTTAACCAGCCGTTTGTAGAATGTCGTCTGATTCGATTGTAATA > ADP1‑WT/1248069‑1248307 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |