Predicted mutation
evidence seq id position mutation annotation gene description
MC JC ADP1‑WT 1,248,192 Δ1,237 bp ACIAD1249[csrA] ACIAD1249, ACIAD1250, [csrA]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ ADP1‑WT 1248192 1249428 1237 36 [0] [0] 37 ACIAD1249–[csrA] ACIAD1249,ACIAD1250,[csrA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? ADP1‑WT = 12481910 (0.000)36 (1.040) 32/250 0.2 100% intergenic (+164/+6) rnhB/ACIAD1249 ribonuclease HII/IS1236 transposase protein 2
?ADP1‑WT 1249429 = 0 (0.000)coding (175/213 nt) csrA carbon storage regulator

ATTAGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATTGATCCTAGACAGTATCGTGGACAACAAATCCCTCTAAATTCTTGAAATATTTCTGTTCAAAGGCTTCTGGGCTTAACCAGCCGTTTGTAGAATGTCGTCTGATTCGATTGTAATA  >  ADP1‑WT/1248069‑1248307
                                                                                                                          |                                                                                                                    
aTTAGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcat                                                                                                                   >  2:458991‑M1/1‑123 (MQ=255)
   aGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgca                                                                                                                <  1:28000‑M1/126‑7 (MQ=255)
   aGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgca                                                                                                                <  1:44462‑M1/126‑7 (MQ=255)
   aGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgca                                                                                                                <  2:250738‑M1/126‑7 (MQ=255)
       gCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgc                                                                                                            <  2:240074‑M1/126‑11 (MQ=255)
        cTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgca                                                                                                           <  1:385077‑M1/126‑12 (MQ=255)
                 gggAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgt                                                                                                  <  1:231326‑M1/126‑21 (MQ=255)
                   gagaAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTAATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttg                                                                                                >  2:194717‑M1/1‑104 (MQ=255)
                         aaTTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacg                                                                                          <  2:244429‑M1/126‑29 (MQ=255)
                            tAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttg                                                                                       <  2:305876‑M1/126‑32 (MQ=255)
                                      cTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTAATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctct                                                                             <  1:195011‑M1/126‑42 (MQ=255)
                                          aaCGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcac                                                                         >  1:265959‑M1/1‑81 (MQ=255)
                                           aCGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacg                                                                        >  1:152616‑M1/1‑80 (MQ=255)
                                               ttAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatga                                                                    <  1:459653‑M1/126‑51 (MQ=255)
                                                tAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaa                                                                   <  2:311478‑M1/126‑52 (MQ=255)
                                                 aaaaTTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaac                                                                  <  2:260387‑M1/126‑53 (MQ=255)
                                                  aaaTTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaaca                                                                 >  1:152626‑M1/1‑73 (MQ=255)
                                                    attattTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacaga                                                               <  2:464884‑M1/126‑56 (MQ=255)
                                                    attattTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacaga                                                               <  2:183021‑M1/126‑56 (MQ=255)
                                                       attTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagac                                                            <  1:33818‑M1/126‑59 (MQ=255)
                                                        ttttGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagact                                                           >  1:29684‑M1/1‑67 (MQ=255)
                                                         tttGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagactt                                                          >  2:370217‑M1/1‑66 (MQ=255)
                                                         tttGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagactt                                                          >  2:68604‑M1/1‑66 (MQ=255)
                                                           tgtgAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttct                                                        <  2:265559‑M1/126‑63 (MQ=255)
                                                              gAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttc                                                     <  2:457895‑M1/126‑66 (MQ=255)
                                                               agtagtTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcg                                                    <  2:76822‑M1/126‑67 (MQ=255)
                                                                gtagtTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcgg                                                   <  1:84163‑M1/126‑68 (MQ=255)
                                                                 tagtTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgacaaatctcttcacgatgaacagagacttctttcgga                                                  >  2:98973‑M1/1‑58 (MQ=255)
                                                                     tATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcat                                              >  1:252747‑M1/1‑54 (MQ=255)
                                                                                aaaGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcattcacaccaata                                   <  1:219937‑M1/126‑84 (MQ=255)
                                                                                   gaagGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcattcacaccaatacga                                <  1:441539‑M1/126‑87 (MQ=255)
                                                                                       gCTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcattcacaccaatgcgaacct                            >  1:160842‑M1/1‑36 (MQ=255)
                                                                                        cTGATAATCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcattcacaccaatacgaacctg                           <  2:29644‑M1/126‑92 (MQ=255)
                                                                                               tCTTGATCTAAATGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcattcacaccaatacgaacctgattacct                    >  1:245931‑M1/1‑28 (MQ=255)
                                                                                                           tGTTGAAGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcattcacaccaatacgaacctgattacctttaacaccaagc        >  2:278608‑M1/1‑16 (MQ=255)
                                                                                                                 aGATGTTCATcatgcattgcacgttcgtgttgaatacgttgataaatctcttcacgatgaacagagacttctttcggagcattcacaccaatacgaacctgattacctttaacaccaagcacagta  <  2:346991‑M1/126‑117 (MQ=255)
                                                                                                                          |                                                                                                                    
ATTAGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATTGATCCTAGACAGTATCGTGGACAACAAATCCCTCTAAATTCTTGAAATATTTCTGTTCAAAGGCTTCTGGGCTTAACCAGCCGTTTGTAGAATGTCGTCTGATTCGATTGTAATA  >  ADP1‑WT/1248069‑1248307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.