New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1 =0 (0.000)34 (0.620) 25/70 0.9 100% intergenic (–/‑189) –/thrL –/thr operon leader peptide
?REL606 = 4629812 0 (0.000)intergenic (+24/–) lasT/– predicted rRNA methyltransferase/–

CATATTGCCCGTTGCAGTCAGAATGAAAAGCT..................................  <  REL606/32‑1
................................GAAAAATACTTACTAAGGCGTTTTTTATTTGGTG  <  REL606/4629812‑4629779
                                                                  
CATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAA                                >  1:1131495/1‑36 (MQ=255)
CATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAA                                >  1:204874/1‑36 (MQ=255)
CATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAA                                >  1:2725153/1‑36 (MQ=255)
 ATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAAA                               >  1:2636912/1‑36 (MQ=255)
 ATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAAA                               >  2:614075/1‑36 (MQ=255)
      GCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATACT                          <  2:150453/36‑1 (MQ=40)
      GCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATACT                          >  1:81870/1‑36 (MQ=40)
       CCCGTTGCAGTCAGAATGAAAAGCTGAAAAATACTT                         <  1:382037/36‑1 (MQ=38)
       CCCGGTGCAGTCAGAATGAAAAGCTGAAAAATACTT                         <  1:845290/36‑1 (MQ=255)
          GTTGCAGTCAGAATGAAAAGCTGAAAAATACTTACT                      >  1:2510014/1‑36 (MQ=1)
           gTGCAGTCAGAATGAAAAGCTGAAAAATACTTACTA                     <  2:1904339/35‑1 (MQ=1)
           TTGCAGTCAGAATGAAAAGCTGAAAAATACTTACTA                     <  1:2153826/36‑1 (MQ=1)
           TTGCAGTCAGAATGAAAAGCTGAAAAATACTTACTA                     >  2:3035712/1‑36 (MQ=1)
              CAGTCAGAATGAAAAGCTGAAAAATACTTACTAAGG                  >  2:787268/1‑36 (MQ=1)
               AGTCAGAATGAAAAGCTGAAAAATACTTACTAAGGC                 >  2:3143317/1‑36 (MQ=1)
                GTCAGAATGAAAAGCTGAAAAATACTTACTAAGGCG                <  1:3309877/36‑1 (MQ=1)
                GTCAGAATGAAAAGCTGAAAAATACTTACTAAGGCG                >  2:3628370/1‑36 (MQ=1)
                GTCAGAATGAAAAGCTGAAAAATACGTACTAAGGCG                <  2:1992915/36‑1 (MQ=0)
                GTCAGAATGAAAAGATGAAAAATACTTACTAAGGCG                >  1:2964769/1‑36 (MQ=0)
                 TCAGAATGAAAAGCTGAAAAATACTTACTAAGGCGT               <  2:2895664/36‑1 (MQ=1)
                 TCAGAATGAAAAGCTGAAAAATACTTACTAAGGCGT               >  2:2478516/1‑36 (MQ=1)
                  CAGAATGAAAAGCTGAAAAATACTTACTAAGGCGTT              <  1:1865738/36‑1 (MQ=1)
                   AGAATGAAAAGCTGAAATATACTTACTAAGGCGTTT             <  1:2880076/36‑1 (MQ=0)
                   AGAATGAAAAGCTGAAAAATACTTACTAAGGCGTTT             >  2:2571201/1‑36 (MQ=1)
                     AATGAAAAGCTGAAAAATACTTACTAAGGCGTTTTT           >  2:2961565/1‑36 (MQ=1)
                     AATGAAAAGCTGAAAAATACTTACTAAGGCGTTTTT           >  1:2662764/1‑36 (MQ=1)
                      ATGAAAAGCTGAAAAATACTTACTAAGGCGTTTTTT          <  2:722731/36‑1 (MQ=1)
                         AAAAGCTGAAAAATACTTACTAAGGCGTTTTTTATT       <  2:129290/36‑1 (MQ=1)
                          AAAGCTGAAAAATACTTACTAAGGCGTTTTTTATTT      >  2:1618863/1‑36 (MQ=1)
                            AGCTGAAAAATACTTACTAAGGCGTTTTTTATTTGG    <  2:1621152/36‑1 (MQ=1)
                             GCTGAAAAATACTTACTAAGGCGTTTTTTATTTGGT   <  2:1671513/36‑1 (MQ=1)
                             GCTGAAAAATACTTACTAAGGCGTTTTTTATTTGGT   <  1:3191182/36‑1 (MQ=1)
                              CTGAAAAATACTTACTAAGGCGTTTTTTATTTGGTG  <  2:2073268/36‑1 (MQ=1)
                              CTGAAAAATACTTACTAAGGCGTTTTTTATTTGGTG  >  2:1544635/1‑36 (MQ=1)
                                                                  
CATATTGCCCGTTGCAGTCAGAATGAAAAGCT..................................  <  REL606/32‑1
................................GAAAAATACTTACTAAGGCGTTTTTTATTTGGTG  <  REL606/4629812‑4629779

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 18 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG