Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,357,0020C→T49.0% 161.6162intergenic (‑335/‑139)rrsD/yrdA16S ribosomal RNA/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (1/70):  ref base (18/56):  total (19/143)

Only 100 of 163 total aligned reads displayed.

GGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC.TT.T.TT.T.T.C.TGT.TTGTTGTTTTTTCACCCTTT  >  REL606/3356967‑3357033
                                   |                                       
gggATCCCAATTTTTTGCACAAGTATTTTTTTGATc                                         <  1:2378154/36‑1 (MQ=255)
 ggATCCCAATTTTTTGCACAAGTATTTTTTTGATC.t                                       >  1:2769792/1‑36 (MQ=255)
   aTCCCAATTTTTTGCACAAGGATTTTTTTGATC.tt.t                                    >  2:61527/1‑36 (MQ=255)
      ccAATTTTTTGCAAAAGTATTTTTTTGATC.tt.t.tt.t                               <  1:3412716/36‑1 (MQ=255)
       cAATTTTTTGCACAAGTATTTTTTTGATC.tt.t.tt.t.t                             >  2:173189/1‑36 (MQ=255)
         aTTTTTTGCACAAGTATTTTTTTGATC.TT.T.TT.T.T.C.t                         >  2:3303362/1‑36 (MQ=255)
            ttttGCACAAGTATTTTTTTGATC.TT.T.TT.T.T.C.tgt.t                     >  2:3667148/1‑36 (MQ=255)
               tGCACAAGTATTTTTTTGATC.TT.T.TT.T.T.C.tgt.ttgt                  <  1:313966/36‑1 (MQ=255)
                gCACAAGTATTTTTTTGATC.TT.T.TT.T.T.C.tgt.ttgtt                 <  1:1817832/36‑1 (MQ=255)
                gCACAAGTATTTTTTTGATC.TT.T.TT.T.T.C.tgt.ttgtt                 <  1:1120976/36‑1 (MQ=255)
                   cttgTATTTTTTTCGTT.TT.T.TT.T.C.T.TCT.TTgttgtt              <  2:3069004/33‑1 (MQ=2)
                   caAGTATTTTTTTGATC.TT.T.TT.T.T.C.TGT.TTgttgtt              >  2:150308/1‑36 (MQ=255)
                    gaGTATTTTTTGGTTT.TT.T.TT.T.T.T.TTT.TTTTTTttt             <  1:2819957/35‑1 (MQ=2)
                    caGTATTTTTCTGTTT.TT.T.TT.T.T.T.TTT.TTTTTTttt             <  1:3579472/35‑1 (MQ=2)
                    atttATTTTTCTTTTC.TT.T.TT.T.T.C.TTT.TTTTTTttt             <  2:3068967/33‑1 (MQ=2)
                    aaGTATTTTTTTGATC.TT.T.TT.T.T.C.TGT.TTGTTGttt             >  2:1905400/1‑36 (MQ=255)
                     tttATTCTTTAGTTC.TT.T.TT.T.T.A.TTT.TTTTTTtttt            <  1:2780546/34‑1 (MQ=2)
                     tttATCTTTTTTTTC.TT.T.TT.T.T.C.TTT.TTTTTTtttt            <  2:3328797/34‑1 (MQ=2)
                     tgTATTTTTTT.AT..TT.T.TC.T.T.T.TTT.TTGTTTtttttt          <  1:3006721/35‑1 (MQ=9)
                     tgTATTTTGTTTTTC.TT.T.TT.T.T...TGT.TTTTTTttttt           <  2:2831109/35‑1 (MQ=0)
                      ttttttttttTATA.TT.T.TT.T.T.C.TAT.TTGTTTttttt           <  2:3599358/33‑1 (MQ=12)
                      ttttttttttGTTA.TT.T.TT.T.T.T.TTT.CTGTTTttttt           <  2:2901269/33‑1 (MQ=2)
                      ttttttttttCTTC.TT.T.TT.G.T.T.TTT.TTGTTTttttt           <  2:2940322/33‑1 (MQ=2)
                      ttgtttttttTTTC..T.T.TT.T.T.C.TGT.TTCTTTtttttt          <  2:3525773/33‑1 (MQ=2)
                      ttgtttttttTATC.TT.T.TT.T.T.C.TTT.TTTTTTttttt           <  2:3460934/33‑1 (MQ=12)
                      ttctttttttG.TT.TT.T.TT.G.T.C.TTT.TTTTTTtttttt          <  2:3243433/33‑1 (MQ=0)
                      ttcttttattTATC.TT.T.TT.T.T.T.TTT.TTTTTTttttt           <  1:3633497/33‑1 (MQ=0)
                      ttcttttattGTTT.TT.T.TT.T.T.T.TGT.TTTTTTttttt           <  2:3690089/33‑1 (MQ=2)
                      tattttttttGGTT.TT.T.TT.T.T.C.TGT.TTTTTCctttt           >  2:2443900/4‑36 (MQ=0)
                      ctttttttttTCTC.TT.T.TT.T.T...TCT.TTTTTTtttttt          <  2:3507277/33‑1 (MQ=2)
                      ctgtttttttGATT.TT.T.TT.T.T.T.TTT.TTTTTTttttt           <  1:2760623/33‑1 (MQ=9)
                      atttttttttGTTT.TT.T.TA.T.T.T.TGT.TTTTTTttttt           <  2:3699113/33‑1 (MQ=9)
                      atATTTTTTTTTTC.TT.T.TT.T.T.C.TTT.TTTTTTttttt           <  2:3338279/35‑1 (MQ=12)
                       tttttttttGTTT.TT.C.TT.T.T.T.TTC.TTTTTGtttttt          <  2:3423611/34‑1 (MQ=2)
                       tttttttttGTTC.TT.T.TA.T.T...TTT.TTGTTTttttttt         <  2:3571376/34‑2 (MQ=0)
                       ttttttttaGTTC.TT.T.TT.T.T.T.TTT.GTTTTTtttttt          <  1:68746/34‑1 (MQ=0)
                       tttttgtttGTCC.TT.T.TT.T.T.C.TTT.TTGTTTtttttt          <  2:3224117/34‑1 (MQ=9)
                       tttttatttTATT.TT.T.TT.T.T.C.TTT.TTTTTGtttttt          <  2:3291089/34‑1 (MQ=2)
                       tgtttttttGTTT.TT.T.TT.T.T.C.TTT.TTTTTTttcttt          <  1:3293463/34‑1 (MQ=2)
                       tgtttttttGTTT.TT.T.TT.G.T.T.TTT.TTTTTGtttttt          <  2:3534823/34‑1 (MQ=2)
                       tgtttttttGTTT.TC.T.TT.T.T.T.TTT.TTTTTCtttttt          <  2:3137028/34‑1 (MQ=9)
                       tgtttttttGTTG.TT.T.TT.T.T.G.TTT.TTCTGTtttttt          <  2:2789881/34‑1 (MQ=2)
                       tgttttcttTATCTTT.T.TT.T.T.C.TAT.TTCTTTttttt           <  2:3681032/34‑1 (MQ=0)
                       tgtttatttGTTT.TT.T.TT.T.T.T.TCT.TTTTTTtttttt          <  2:3725818/34‑1 (MQ=2)
                       tctttttttTTTC.TT.T.TT.T.T...TTT.TTATTAttttttt         <  2:3049533/34‑2 (MQ=0)
                       tATTTTATTTTTC.TT.T.TT.T.T.T.TTT.TTTTTCtttttt          <  1:3561323/36‑1 (MQ=0)
                       tATTATTTTG.TT.TT.T.TT.T.T.T.TTT.TTGTTGttttttt         <  2:2791315/36‑2 (MQ=2)
                       gttttttttGTTT.TT.T.GT.T.T.T.GTT.TTTTTGtttttt          <  2:3553093/34‑1 (MQ=2)
                       gtgttttttGTTT.TT.T.TT.T.T.C.TTG.TTTTTTtttttt          <  1:2720006/33‑1 (MQ=0)
                       gctttttttTTTC.TT.T.TT.T.T...TTT.TTCTTTttttttg         <  2:3376053/34‑2 (MQ=0)
                       ctttttcttGTTG.TT.T.TT.T.T.T.TTT.TTCTTTtttttt          <  2:2870397/34‑1 (MQ=2)
                       cttttatttTATT.TT.T.TT.T.T.T.TGT.TTTGTTtttttt          <  2:3224270/34‑1 (MQ=2)
                       cggtttttcTATT.TT.T.TT.T.G.T.TTT.TTGTTGtttttt          <  2:3617270/33‑1 (MQ=2)
                       cctttttttCTTC.TT.T.TT.T.T.T.TTT.TTTTTTtttttt          <  2:3328767/34‑1 (MQ=2)
                       caTTTTTTTCTTC.TT.TCTT.T.T.T.TTT.TTTTTGttttt           <  2:3498076/35‑1 (MQ=2)
                        ttttttttTATC.TT.T.TT.TCT.T.TTT.TTTTTCtttttt          <  2:2930924/35‑1 (MQ=2)
                        ttttttttGTTT.TG.T.TG.T.T.T.TGT.TGTTTGttttttt         <  2:844494/35‑2 (MQ=0)
                        ttttttttGATG.TT.T.TTCT.T.T.TCT.TTTTTTtttttt          <  1:3405735/35‑1 (MQ=0)
                        ttttttttCTTT.TT.T.TT.T.T.T.TGTGTTTTTGtttttt          <  2:3127379/35‑1 (MQ=2)
                        tgtttgttTATT.TT.T.TT.T.T.T.TGT.TTTTTCttttttt         <  2:3175638/34‑2 (MQ=2)
                        tcttttttTTTC.TT.T.TT.T.T...TGT.CTGTTTGTTTTTct        <  2:3717029/34‑2 (MQ=0)
                        gtttttttCTTT.TT.T.TT.T.T.C.TTT.TTTCTCttttttt         <  2:3272078/35‑2 (MQ=0)
                        ctttttttGTTT.TT.T.TC.T.T.T.TTT.TTCTTTttttttt         <  2:3291033/35‑2 (MQ=2)
                        ctttttttGTTC.TT.T.TT.T.T.T.TTT.TCTTTTttttttt         <  2:3000438/35‑2 (MQ=2)
                        ctttatttGTTT.TT.T.TT.T.G.T.TGT.TTTTTTttttttt         <  2:3543707/35‑2 (MQ=2)
                        ccttttttGTTT.TT.T.TT.T.T.T.TGT.TTTTTTttttttt         <  1:3668973/34‑2 (MQ=2)
                        aTTTTTTTGATT.GT.T.TT.T.T.T.TTT.TCTTTCttttttt         <  2:3414295/36‑2 (MQ=2)
                        aTTTTTTTGATC.TT.T.TT.T.T.C.TGT.TTGTTGTTTTTTc         <  2:1489260/36‑1 (MQ=255)
                         tttttttTTTT.TT.T.TT.C.T.C.CGT.TTTTTTtttttttt        <  2:2871380/36‑3 (MQ=2)
                         tttttttTTTT.TT.G.TT.T.T.CTTTT.TTGTTGttttttt         <  2:3039719/36‑2 (MQ=2)
                         tttttttTTTC.TT.T.TT.T.T.T.CTT.TTCTTTtttttttc        <  2:3570510/36‑3 (MQ=2)
                         tttttttTTTC.TT.T.TG.T.T...TTT.TTGTTTttttttgtt       <  2:3243221/36‑4 (MQ=0)
                         tttttttTGTT.TT.T.TT.T.T.C.TTT.TTGTTCTTTTTTct        <  2:3338294/36‑2 (MQ=12)
                         tttttttTGTT.TT.T.TT.G.T.T.TTT.TTGTTGttgtttgt        <  2:3020148/36‑3 (MQ=2)
                         tttttttGTTT.TT.T.TT.C.T.C.T.T.TTGTTTTGTTTTctt       <  1:3479333/36‑3 (MQ=0)
                         tttttttGTTT.TT.T.TG.T.T.T.TTT.TTCTTTTTTTTTct        <  2:3690005/36‑2 (MQ=0)
                         tttttttGTTT.TT.G.TT.G.T.T.TTT.TTTTTGtttttttt        <  2:2750882/36‑3 (MQ=2)
                         tttttttGTTC.TT.T.TT.T.T.T.TTTCTTTTTGttttttt         <  1:2849565/36‑2 (MQ=2)
                         tttttttGCTT.TT.T.TTCT.T.C.T.T.TTGTTTtttttttt        <  2:2959147/36‑3 (MQ=2)
                         tttttttGATC.TT.T.TT.T.T.C.TGT.TTGTTGTTTTTTCa        <  2:982294/36‑1 (MQ=255)
                         tttttttGAT..TT.T.TT.T.T.C.TTT.TTTTTCttttttttt       <  2:3498009/36‑4 (MQ=9)
                         tttttttG.TG.TT.T.AT.T.T.T.TGT.TTTTTTttttttttt       <  2:3393131/36‑4 (MQ=2)
                         tttttttAATT.TT.T.TT.T.TAG.TTT.TTGTTTttttttt         <  2:3743376/36‑2 (MQ=2)
                         ttttttcTATT.TT.T.TT.T.T.T.TCT.TTCTTTtttttttt        <  2:3507220/36‑3 (MQ=2)
                         ttttttaGTTT.TG.T.TT.T.T.T.TTT.TTATTGtttttttt        <  2:3752084/36‑3 (MQ=9)
                         tttttgtGTTT.TT.T.TT.T.T.C.TTT.CTTTTTtttttttt        <  2:2920789/36‑3 (MQ=2)
                         gttttttTCTC.TC.T.TT.T.T.T.TGT.TTTTTTtttttttt        <  2:2750857/35‑3 (MQ=2)
                         attttttTCTT.TT.T.TT.T.T.T.TGT.TTTTTCtttttttt        <  2:3010287/35‑3 (MQ=9)
                          ttttttTTTA.TT.T.TT.T.T.C.TGT.TTTTATttttttttt       <  2:3039745/36‑4 (MQ=2)
                          ttttttTCTT.TT.T.GT.T.T.C.TTT.TTGTTTttttttttt       <  2:3127276/36‑4 (MQ=0)
                          ttttttGTTT.TTGT.TT.T.T.C.T.T.TTGTTTttttttttt       <  2:3732058/36‑4 (MQ=2)
                          ttttttGTTT.TT.T.TT.T.T.T.CTT.TTTTTGttttttttc       <  2:3507124/36‑4 (MQ=9)
                          ttttttGGTG.TT.T.TT.T.T.T.TTT.TTGTTTtttttttgt       <  2:202943/36‑4 (MQ=2)
                          ttttttGATT.CC.T.TT.A.T.T.TGT.TTTTTGttttttttg       <  2:3020160/36‑4 (MQ=2)
                          ttttttGATC.TT.TCTA.G.T.C.TCT.TTTTTTtttttttt        <  2:3432967/36‑3 (MQ=0)
                           tttttGTTC.TT.T.TT.T.TGG.TGT.TTTTTCttttttttt       <  2:3608448/36‑4 (MQ=2)
                           tttttGATC.TT.T.TT.T.T.C.TGT.TTGTTGTTTTTTCatc      >  2:2970731/1‑34 (MQ=255)
                           tttttGATC.TT.T.TT.T.T.C.TGT.TTGTTGTTTTTTCAcc      >  2:2961690/1‑36 (MQ=255)
                           tttttGATC.TT.T.TT.T.T.C.TGT.TTGTTGTTTTTTCAcc      >  2:842307/1‑36 (MQ=255)
                               tGATC.TT.T.TT.T.T.C.TGT.TTGTTGTTTTTTCACCCttt  >  1:2114620/1‑36 (MQ=255)
                                   |                                       
GGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC.TT.T.TT.T.T.C.TGT.TTGTTGTTTTTTCACCCTTT  >  REL606/3356967‑3357033

Base quality scores:  ATCG  < 3 ≤  ATCG  < 5 ≤  ATCG  < 8 ≤  ATCG  < 18 ≤  ATCG  < 32 ≤  ATCG