Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp intergenic (‑14/‑514) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16972 =0 (0.070)62 (1.130) 23/70 1.1 100% intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 588495 = NA (NA)noncoding (1/1977 nt) IS150 repeat region
* ? REL606 = 169740 (0.000)52 (1.000) 27/66 0.6 100% intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 590471 NA (NA)noncoding (1977/1977 nt) IS150 repeat region

GAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGG  >  REL606/588460‑588528
                                   |                                 
naGTCNTGCAGAAAAAAACTGGTTCAGCTTCAAGtt                                   <  2:2876876/35‑1 (MQ=38)
gAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGtt                                   <  2:3629007/36‑1 (MQ=255)
 aGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTg                                  <  1:3012369/36‑1 (MQ=255)
  gTCATGCAGAAAAAAAAGGGTTCAGCTTCAAGttat                                 >  1:1734632/1‑34 (MQ=38)
     aTGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt                              >  2:815695/1‑36 (MQ=255)
     aTGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt                              >  1:1346451/1‑36 (MQ=255)
     aTGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt                              >  1:3134279/1‑36 (MQ=255)
       gCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGc                            >  2:2926084/1‑36 (MQ=255)
        cAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCa                           >  2:1772326/1‑36 (MQ=255)
        cAGAAAAAAACGGGTACAGCTTCAAGTTGTACTGCa                           <  2:3384805/36‑1 (MQ=255)
         aGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAc                          >  1:3122913/1‑36 (MQ=255)
         aGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAc                          >  2:278458/1‑36 (MQ=255)
         aGAAAAAAACGGGTTCAGCTCCAAGTTGCACTGCAc                          >  2:3389808/1‑36 (MQ=38)
          gAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAcc                         <  1:2710634/36‑1 (MQ=255)
          gAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAcc                         >  2:3334551/1‑36 (MQ=255)
             aaaaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAt                      <  1:2233692/36‑1 (MQ=255)
              aaaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtt                     <  2:323453/36‑1 (MQ=255)
               aaaCGGGTTCTGCTTCAAGTTGTACTGCACCCAttt                    <  1:1397422/36‑1 (MQ=255)
               aaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAttt                    >  2:2288180/1‑36 (MQ=255)
               aaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAttt                    >  1:1102402/1‑36 (MQ=255)
               aaaCGGGGTCAGCTTCAAGTTGTACTGCACCCAttt                    <  2:2895466/36‑1 (MQ=255)
                aaCGGGTTCAGCTTCTAGTTGTACTGCACCCAtttt                   <  1:3549869/36‑1 (MQ=255)
                aaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtttt                   >  1:2431022/1‑36 (MQ=255)
                aaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtttt                   >  2:2932156/1‑36 (MQ=255)
                  cGGGTTCAGCTTCAAGTTGTACTGCACCCATTttgt                 <  2:3323202/36‑1 (MQ=255)
                  cGGGTGCAGCTTCAAGTTGTACTGCACCCATTttgt                 <  2:480703/36‑1 (MQ=255)
                   gggTTCAGCTTCAAGTTGTACTGCACCCATTttgtt                <  2:1894445/36‑1 (MQ=255)
                     gTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTgg              >  2:3386571/1‑36 (MQ=255)
                     gTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTgg              >  1:46913/1‑36 (MQ=255)
                     gTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTgg              <  2:1003842/36‑1 (MQ=255)
                      ttCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGa             <  2:498984/36‑1 (MQ=255)
                      ttCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGa             >  2:1778051/1‑36 (MQ=255)
                      ttCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGa             >  2:2942203/1‑36 (MQ=255)
                        cAGCTTCAAGTTGTACTGCACCCATTTTGTTGGACg           <  1:2280289/36‑1 (MQ=255)
                         aGCTTCAAATTGTACTGCACCCATTTTGTTGGACGa          <  1:2794435/36‑1 (MQ=255)
                          gCTTCAAGTTGTACTGCACCCATTTTGTTGGACGAt         <  1:2391857/36‑1 (MQ=255)
                           cTTCAAGTTGTACTGCACCCATTTTGTTGGACGATg        >  2:1108659/1‑36 (MQ=255)
                            ttCAAGTTGTACTGCACCCATTTTGTTGGACGATGa       >  1:1208667/1‑36 (MQ=255)
                             tCAATTTGTACTGCACCCATTTTGTTGGACGATGaa      >  2:1745480/1‑36 (MQ=12)
                             tCAAGTTGTACTGCACCCATTTTGTTGGACGATGaa      >  2:2924306/1‑36 (MQ=255)
                              cAAGTTGTACTGCACCCATTTTGTTGGACGATGaaa     >  1:3689272/1‑36 (MQ=40)
                                tgTTGTACTGCACCCATCTCGTTCGACGATGaaacc   >  1:678546/2‑34 (MQ=2)
                                aGTTGTACTGCACCCATTTTGTTGGACGATGAAATg   >  1:2642380/1‑36 (MQ=35)
                                 gTTGTACTGCACCCATTTTGTTGGGCGATGAGATgg  <  2:3574493/36‑1 (MQ=11)
                                 gTTGTACGGCACCCAGTTTGTTGGACGATGAAATgg  <  2:2852844/36‑1 (MQ=11)
                                   |                                 
GAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGG  >  REL606/588460‑588528

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG