Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp coding (573‑575/1041 nt) ynjI ← predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1821525 =1 (0.060)59 (1.140) 39/66 0.1 98.3% coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 18215270 (0.110)57 (1.070) 27/68 0.6 100% coding (573/1041 nt) ynjI predicted inner membrane protein
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

CCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGT...................................  >  REL606/1821493‑1821527
...................................TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA  >  REL606/2774435‑2774470
                                                                       
 CTCCATGTTTGCTTTGAAGGTATTGGCTCCATGGTG                                    <  1:513012/36‑1 (MQ=0)
 CTCCATGTTTGCTTTAAAGGTATTGGCTCCACGGTG                                    >  1:2044674/1‑36 (MQ=0)
   CCATGTTTGCTTTAAAGGTATTGGCTCCATGGTGTg                                  <  2:1633966/36‑2 (MQ=1)
    CATGTTTGCTTTAAAGGTATTGGCTCCATGGTGTAg                                 >  2:3153073/1‑35 (MQ=1)
    CATGTTTGCTTTAAAGGTATTGGCTCCATGGTGTAC                                 >  2:2272166/1‑36 (MQ=1)
    CATGTTTGCTTTAAAGGTATTGGCTCCATGGTGTAC                                 >  2:3591872/1‑36 (MQ=1)
     ATGTTTGCTTTAAAGGTATTGGCTCCATGGTGTACT                                <  2:3391765/36‑1 (MQ=1)
       GTTTGCTTTAAAGGTATTGGCTCCATGGTGTACTGA                              <  1:1699419/36‑1 (MQ=1)
        TTTGCTTTAAAGGTATTGGCTCCATGGTGTACTGtc                             >  1:532498/1‑34 (MQ=1)
        TTTGCTTTAAAGGTATTGGCTCCATGGTGTACTGAC                             <  1:1482684/36‑1 (MQ=1)
        TTTGCTATAAAGGTATTGGCTCCATGGTGTACTGAC                             <  1:1853033/36‑1 (MQ=0)
         TTGCTTTAAAGGTATTGGCTCCATGGTGTACTGACC                            >  2:2594364/1‑36 (MQ=1)
         TTGCTTTAAAGGTATTGGCTCCATGGTGTACTGACC                            <  1:2590613/36‑1 (MQ=1)
         TTGCTTTAAAGGTATTGGCTCCATGGTGTACTGACC                            <  1:224650/36‑1 (MQ=1)
         TTGCTTTAAAGGTATTGGCTCCATGGTGTACTGACC                            >  1:2061092/1‑36 (MQ=1)
         TTGCTTTAAAGGTATTGGCTCCATGGTGTACTGACC                            <  1:1517462/36‑1 (MQ=1)
              TTATAGGTATTGGCTCCATGGTGTACTGACCCCAAA                       <  2:1135572/36‑1 (MQ=255)
              TTAAAGGTATTAGCTCCATGGTGTACTGACCCCAAA                       <  1:1715854/36‑1 (MQ=255)
              TTAAAGATATTGGCTCCATGGTGTACTGACCCCAAA                       <  2:2416511/36‑1 (MQ=255)
               TAAAGGTATTGGCTCCATGGTGTACTGACCCCAAAA                      >  2:1145078/1‑36 (MQ=255)
               TAAAGGTATTGGCTCCATGGTGTACTGACCCCAAAA                      >  1:3192482/1‑36 (MQ=255)
                AAAGGTATTGGCTCCATGGTGTACTGACCCCATAAA                     >  2:34333/1‑36 (MQ=12)
                AAAGGTATTGGCTCCATGGTGTACTGACCCCAAAAA                     >  2:2139593/1‑36 (MQ=255)
                 AAGGTATTGGCTCCATGGCGTACTGACCCCAAAAAG                    >  2:2441211/1‑36 (MQ=255)
                  AGGTATTGGCTCCATGGTGTACTGACCCCAAAAAGT                   >  1:3501010/1‑36 (MQ=255)
                   GGTATTGGCTCCATGGTGTACTGACCCCAAAAAGTT                  >  1:1143090/1‑36 (MQ=255)
                    GTATTGGCTCCATGGTGTACTGACCCCAAAAAGTTG                 <  1:537083/36‑1 (MQ=255)
                    GTATTGGCTCCATGGTGTACTGACCCCAAAAAGTTG                 <  1:1596581/36‑1 (MQ=255)
                    GTATTGGCTCCATGGTGTACTGACCCCAAAAAGTTG                 >  2:1912223/1‑36 (MQ=255)
                    GTATTGGCTCCATGGTGTACTGACCCCAAAAAGTTG                 <  2:3571166/36‑1 (MQ=255)
                     TATTGGCTCCATGGTGTACTGACCCCAAAAAGTTGG                >  1:3520693/1‑36 (MQ=255)
                     TATTGGCTCCATGGTGTACTGACCCCAAAAAGTTGG                >  2:1319719/1‑36 (MQ=255)
                       TTGGCTCCATGGTGTACTGACCCCAAAAAGTTGGAC              <  1:3589120/36‑1 (MQ=255)
                        TGGCTCCATGGTGTACTGACCCCAAAAAGTTGGACA             <  1:2715769/36‑1 (MQ=255)
                         GGCTCCATGGTGTACTGACCCCAAAAAGTTGGACAG            >  2:934353/1‑36 (MQ=255)
                          GCTCCATGGTGTACTGACCCCAAAAAGTTGGACAGT           >  1:680187/1‑36 (MQ=255)
                             CCATGGTGTACTGACCCCAAAAAGTTGGATAGTTAA        >  2:2705250/1‑36 (MQ=255)
                             CCATGGTGTACTGACCCCAAAAAGTTGGACAGTTAA        >  2:157284/1‑36 (MQ=40)
                             CCATGGTGTACTGACCCCAAAAAGTTGGACAGTTAA        <  2:1024280/36‑1 (MQ=40)
                              accGGTGTACTGACCCCAAAAAGTTGGACAGTTAAA       <  1:3344581/33‑1 (MQ=1)
                              CATTGTGTACTGACCCCAAAAAGTTGGACAGTTAAA       >  2:163296/1‑36 (MQ=12)
                               ccGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC      >  2:3056113/3‑36 (MQ=1)
                               ATGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC      <  1:478875/36‑1 (MQ=35)
                               ATGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC      >  2:2595908/1‑36 (MQ=35)
                               ATGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC      <  1:1745304/36‑1 (MQ=35)
                               ATGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC      <  1:1293603/36‑1 (MQ=35)
                                cGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA     >  1:680272/2‑36 (MQ=1)
                                cGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA     <  1:828944/35‑1 (MQ=1)
                                TGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA     <  2:1788823/36‑1 (MQ=32)
                                 GGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC    >  2:685268/1‑36 (MQ=1)
                                 GGTGTACTAACCCCAAAAAGTTGGACAGTTAAACAC    <  1:2909498/36‑1 (MQ=0)
                                  GTGTAGTGACCCCAAAAAGTTGGACAGTTAAACACG   <  1:2805898/36‑1 (MQ=0)
                                  GTGTACTGACGCCAAAAAGTTGGACAGTTAAACACG   <  1:1466661/36‑1 (MQ=0)
                                  GTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG   >  2:3295182/1‑36 (MQ=1)
                                  GTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG   >  1:2537782/1‑36 (MQ=1)
                                  GTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG   <  2:744703/36‑1 (MQ=1)
                                  GTGTACTCACCCCAAAAAGTTGGACAGTTAAACACG   >  2:781825/1‑36 (MQ=0)
                                                                       
CCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGT...................................  >  REL606/1821493‑1821527
...................................TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA  >  REL606/2774435‑2774470

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 32 ≤  ATCG