Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,424,8750A→T27.5% 18.445intergenic (+93/‑33)nirD/nirCnitrite reductase small subunit/nitrite transporter
Reads supporting (aligned to +/- strand):  new base (0/11):  ref base (5/24):  total (5/40)

TATATTGCAGGACATTTTTTAAACTTTTTG.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGATAATCAAATG  >  REL606/3424841‑3424910
                                    |                                    
tataTTGCAGGACATTTTTTAAACTTTTTG.TTT.TAt                                     <  1:1236580/36‑1 (MQ=255)
tataTTGCAGGACATTTTTTAAACTTTTTG.TTT.TAt                                     <  1:3247150/36‑1 (MQ=255)
 atatTGCAGGACATTTTTTAAACTTTTTG.TTT.TAtt                                    >  1:1183741/1‑36 (MQ=255)
 atatTGCAGGACATTTTTTAAACTTTTTG.TTT.TAtt                                    <  1:1282723/36‑1 (MQ=255)
  tatTGCAGGACATTTTTTAAACTTTTTG.TTT.TAtt.t                                  <  2:1067011/36‑1 (MQ=255)
  tatTGCAGGACATTTTTTAAACTTTTTG.TTT.TAtt.t                                  <  2:1067867/36‑1 (MQ=255)
    ttGCAGGACATTTTTTAAACTTTTTG.TTT.TAtt.ttt                                >  2:3535968/1‑36 (MQ=255)
     tGCAGGACATTTTTTAAACTTTTTG.TTT.TAtt.tttt                               <  1:2046500/36‑1 (MQ=255)
           tttttttttTATGTTTTTG.TTT.TTCT.TTTTTttttt                         <  2:2870420/33‑1 (MQ=9)
           ttcttttttACTTTTTTTG.TTT.TTTT.TTTTTttttt                         <  1:3016463/33‑1 (MQ=2)
           ttaTTTTTTCTTCTTTTTT.TTT.TTTT.TGTTTttttt                         <  2:3281751/34‑1 (MQ=0)
           tctttttttTTACTTTATT.TTT.TGTT.TTTTTttttt                         <  2:3366227/33‑1 (MQ=12)
           aCATTTTTTAAACTTTTTG.TTT.TATT.TTTTGttttt                         >  1:3573144/1‑36 (MQ=255)
            ttttttttATTTTTTTTG.TTT.TTTTGTTTTGttttt                         <  2:3468814/34‑1 (MQ=0)
            tcttttttTCATTTTTTG.TTT.TTTT.TTTTTtttttt                        <  1:3543043/34‑2 (MQ=2)
            cATTTTTTAAACTTTTTG.TTT.TATT.TTTTGTTTTTa                        <  2:61866/36‑1 (MQ=255)
            aaTTTTTTTTTCTTTTTT.TCT.TTTT.TTTTGttattt                        <  2:3553285/35‑2 (MQ=2)
             tttttttAATTTTTGGG.TTT.TATT.TTGTTTTCTTAt                       <  2:2709673/35‑1 (MQ=0)
             gttttttATTTTTTTTG.TTT.TTTT.ATTTTttttttt                       <  2:3734748/35‑3 (MQ=0)
             gttttttATTCTTTATT.TTT.TTTT.TTTTTttttttt                       <  2:3671910/35‑3 (MQ=2)
             cttttttTTACTTTTTT.TTT.TGTT.TTTTTctttttt                       <  2:2781403/35‑3 (MQ=2)
             cttttttATTTTTTCTT.TTT.TTTT.TTTTGttttttt                       <  2:3644893/35‑3 (MQ=9)
             cttttttATTCTTTTTG.TTT.TCTT.TTTTTttttttt                       <  1:3198821/35‑3 (MQ=12)
              ttttttTATTTTTTTG.TTTGTTTT.TTTTGttttttt                       <  2:3742731/36‑3 (MQ=0)
              ttttttATTTTTTTTT.TTT.TGTT.TTTTTttttttgg                      <  2:2901300/36‑4 (MQ=2)
               tttttATATCTTTTT.TTT.TATT.TTTTTTTTTTTttt                     <  1:3112836/36‑1 (MQ=9)
               tttttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAttt                     >  2:807886/1‑36 (MQ=255)
               tttttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAttt                     <  1:2516067/36‑1 (MQ=255)
                ttttATGCTTTTTT.TTT.TGTT.TTTTCTTTTCTtttt                    <  2:2751020/36‑1 (MQ=0)
                ttttATATTTTTTT.TGT.TATT.TTATTTTTTTTtttt                    <  2:3281590/36‑1 (MQ=2)
                ttttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAtttt                    <  2:3006371/36‑1 (MQ=255)
                ttttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAtttt                    <  1:1804578/36‑1 (MQ=255)
                  ttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAtttttt                  <  2:829907/36‑1 (MQ=255)
                    aaaCTTTTTG.TTT.TATT.TTTTGTTTTTATTTTTTaa                <  2:3640737/36‑1 (MQ=255)
                    aaaCTTTTTG.TTT.TATT.TTTTGTTTTTATTTTTTaa                <  2:3298524/36‑1 (MQ=255)
                     taCTGTTTGTTTT.TATT.TTTTTTTATTTtttttttt                <  2:3385489/35‑3 (MQ=0)
                     aaCTTTTTG.TTT.TATT.ATTTGTTTTTATTTTTTaaa               <  1:2694106/36‑1 (MQ=255)
                      aCTTTTTCTTTT.TTTT.TTTTGTTTTTTttttttttt               <  2:3289803/36‑4 (MQ=2)
                         ttttG.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGAt           <  1:3642548/36‑1 (MQ=255)
                           ttG.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGATaa         <  2:647030/36‑1 (MQ=255)
                             g.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGATAATc       >  1:2941456/1‑36 (MQ=255)
                               ttt.tATT.TTTTGTTTTTATTTTTTAAAGGATAATCa      <  1:24868/36‑1 (MQ=255)
                               ttt.tATT.TTTTGTTTTTATTTTTTAAAGGATAATCa      <  1:555793/36‑1 (MQ=255)
                                   tATT.TTTTGTTTTTATTTTTTAAAGGATAATCAAAt   <  2:1476218/36‑1 (MQ=255)
                                   tATT.TTTTGTTTTTATTTTTTAAAGGATAATCAAAt   <  2:1463277/36‑1 (MQ=255)
                                    aTT.TTTTGTTTTTATTTTTTAAAGGATAATCAAATg  >  2:1962436/1‑36 (MQ=255)
                                    aTT.TATTGTACTTATTATTAAAAGGATAATCAAAtt  <  1:1465929/36‑2 (MQ=12)
                                    |                                    
TATATTGCAGGACATTTTTTAAACTTTTTG.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGATAATCAAATG  >  REL606/3424841‑3424910

Base quality scores:  ATCG  < 3 ≤  ATCG  < 5 ≤  ATCG  < 11 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG