Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,037,5980A→C31.6% 10.5381397ECB_02838GspD, hypothetical type II secretion protein
Reads supporting (aligned to +/- strand):  new base (0/12):  ref base (15/11):  total (15/23)

GCGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTT.AA.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTCACC  >  REL606/3037563‑3037633
                                    |                                    
gCGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTT.aa                                      <  2:1543471/36‑1 (MQ=255)
gCGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTT.aa                                      <  2:1114537/36‑1 (MQ=255)
gCGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTT.aa                                      <  1:3560305/36‑1 (MQ=255)
  gTGGGGAGCGCGTTAGAGCTGGAGTCGTTTTT.AA.cc                                   <  1:2751258/36‑1 (MQ=38)
  gTGGAGAGCACGTTAGAGCTGGAGTCGTTTTT.aaac                                    >  1:2470461/1‑34 (MQ=255)
   tGGAGAGCACGTTAGAGCTGGAGTCGTTTTT.AA.CCg                                  <  2:1947323/36‑1 (MQ=255)
   tGGAGAGCACGTTAGAGCTGGAGTCGTTTTT.AA.CCg                                  <  1:3532410/36‑1 (MQ=255)
    ggAGAGCACGTTAGAGCTGGAGTCGTTTTT.AA.CCGc                                 >  2:1995538/1‑36 (MQ=255)
     gagaGCACGTTAGAGCTGGAGTCGTTTTT.AA.CCGcc                                <  2:1310865/36‑1 (MQ=255)
     gagaGCACGTTAGAGCTGGAGTCGTTTTT.AA.CCGcc                                >  1:2141455/1‑36 (MQ=255)
     gagaGCACGTGGGGGCGGGAGTCGTTTTT.AA.CCGcc                                <  1:1120343/36‑1 (MQ=19)
      agagCACGTTAGAGCTGGAGTCGTTTTT.AA.TCGCCt                               >  2:3451513/1‑36 (MQ=255)
       gagGACGTTAGAGCTGGAGTCGTTTTT.AA.CCGCCTg                              <  2:864797/36‑1 (MQ=255)
       gagCACTTTAGAGCTGGAGTCGTTTTT.AA.CCGCCTg                              <  2:1852164/36‑1 (MQ=255)
       gagCACGTTAGAGCTGGAGTCGTTTTT.AA.CCGCCTg                              <  2:3348590/36‑1 (MQ=255)
       gagCACGTTAGAGCTGGAGTCGTTTTT.AA.CCGCCTg                              >  1:1606511/1‑36 (MQ=255)
        agCGCGTTAGAGCGGGTTTTGTTTTA.AA.CCGCCTGc                             <  2:1217528/36‑1 (MQ=9)
        agCACGTTAGAGCTGGAGTCGTTTTT.AA.CCGCCTGc                             >  1:3356016/1‑36 (MQ=255)
         gCACGTTAGAGCTGGAGTCGTTTTT.AA.CCGCCTgaa                            >  1:1538558/1‑34 (MQ=255)
          cACGTTAGAGCTGGAGTCGTTTTT.AA.CCGCTTGCAc                           >  2:223325/1‑36 (MQ=255)
          cACGTTAGAGCTGGAGTCGTTTTT.AA.CCGCCTGCAc                           >  2:3566049/1‑36 (MQ=255)
            cgatAGGGCTGGAGTGGTTTTT.AC.CCGCCTGCACCa                         <  2:2003866/33‑1 (MQ=16)
               tAGAGCTGGAGTCGTTTTT.AA.CCGCCTGCACCAgcg                      >  1:2057823/1‑36 (MQ=255)
                 gagCGGGAGTCGTTTAT.AC.CCGCCTGCACCAGCGcc                    <  2:2610879/36‑1 (MQ=21)
                  agCTGGAGTCGTTTTT.AA.CCGCCTGCACCAGCGCCa                   >  2:184917/1‑36 (MQ=255)
                       gattCGTTTTA.AC.CCGCCTGCACCAGCGCCATCCAg              <  1:505228/33‑1 (MQ=21)
                       gactCGTTTTA.AC.CCGCCTGCACCAGCGCCATCCAg              <  2:3363843/33‑1 (MQ=21)
                       gAGTCGTTTTT.AA.CCGCCTGCACCAGCGCCATCCAg              >  2:1749261/1‑36 (MQ=255)
                       gAGGCGTTTTTCAC.CCGCCTGCACCAGCGCCATCCa               <  1:2685673/36‑1 (MQ=16)
                        aGTTGTTTTA.AC.CCGCCTGCACCAGCGCCATCCAGt             <  1:781709/36‑1 (MQ=21)
                         gTCTTTTTA.AC.CCGCCTGCACCAGCGCCATCCAGTc            <  2:506876/36‑1 (MQ=21)
                         actgTTTTC.AACCCGCCTGCACCAGCGCCATCCAGt             <  1:1352675/33‑1 (MQ=16)
                          ttcttttt.AACCCGCCTGCACCAGCGCCATCCAGTc            <  2:590060/33‑1 (MQ=21)
                          tctttttt.AC.CCGCCTGCACCAGCGCCATCCAGTCg           <  2:826206/33‑1 (MQ=25)
                          tCGTTTCA.AC.CCGCCCGCACCAGCGCCATCCAGTCg           <  2:3663702/36‑1 (MQ=19)
                           cGTTTTT.AA.CCGACTGCACCAGCCCCATCCAGTCGc          >  1:2398368/1‑36 (MQ=37)
                             ttttt.AC.CCGCCTGCACCAGCGCCATCCAGTCGCCt        <  1:1763806/36‑1 (MQ=255)
                             tttta.AC.CCGCCTGCACCAGCGCCATCCAGTCGCCt        <  2:2133649/36‑1 (MQ=25)
                             tttta.AC.CCGCCTGCACCAGCGCCATCCAGTCGCCt        <  1:3163833/36‑1 (MQ=25)
                               ttt.AA.CCGCCTGCACCAGCGCCACCCAGTCGCCtct      >  1:229533/1‑34 (MQ=37)
                               ttt.AA.CCGCCTGCACCACCCCCACCCAGTCGCCtcc      >  1:577078/1‑34 (MQ=21)
                                tt.AA.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTc     >  2:1979215/1‑36 (MQ=255)
                                   aa.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTcac   >  1:896437/1‑36 (MQ=255)
                                    a.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTcacc  >  2:2206107/1‑36 (MQ=255)
                                    |                                    
GCGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTT.AA.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTCACC  >  REL606/3037563‑3037633

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 14 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG