New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 547699NA (NA)52 (0.940) 27/70 0.7 NA noncoding (1/768 nt) IS1 repeat region
?REL606 555924 = NA (NA)coding (1209/2346 nt) ECB_00513 conserved hypothetical protein

ATCATACACTAAATCAGTAAGTTGGCAGCATCACC..................................  >  REL606/547665‑547699
...................................CAAACGCGCATCAGGTGCAACATACATTAATAAA  >  REL606/555924‑555957
                                                                     
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                   <  1:743404/36‑1 (MQ=1)
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                   >  1:480071/1‑36 (MQ=1)
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                   >  1:313596/1‑36 (MQ=1)
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                   <  2:3260892/36‑1 (MQ=1)
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                   >  1:2814508/1‑36 (MQ=1)
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                   >  1:2759000/1‑36 (MQ=1)
 TCATACGCTAAATCAGTAAGTTGGCAGCATCACCCA                                  <  1:1936289/36‑1 (MQ=0)
 TCATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                  <  2:3541555/36‑1 (MQ=1)
 TCATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                  >  2:1669382/1‑36 (MQ=1)
 TCATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                  <  1:2645458/36‑1 (MQ=1)
  CATACACTAAATCAGTAAGTTGGCAGCATCACCCAA                                 <  1:3573889/36‑1 (MQ=1)
  CATACACTAAATCAGTAAGTTGGCAGCATCACCCAA                                 <  1:957619/36‑1 (MQ=1)
  CATACACTAAATCAGTAAGTTGGCAGCATCACCCAA                                 >  1:2549337/1‑36 (MQ=1)
     ACACTAAATCAGTAAGTTGGCAGCATCACCCAAACG                              >  1:1007276/1‑36 (MQ=1)
     ACACTAAATCAGTAAGTTGGCAGCATCAACCAAACG                              >  2:3723736/1‑36 (MQ=0)
      CACTAAATCAGTAAGTTGGCAGCATCACCCAAACGC                             <  2:1155112/36‑1 (MQ=1)
      CACTAAATCAGTAAGTTGGCAGCATCACCCAAACGC                             <  2:3530522/36‑1 (MQ=1)
      CACTAAATCAGTAAGTTGGCAGCATCACCCAAACGC                             <  1:1108564/36‑1 (MQ=1)
        CTAAATCAGTAAGTTGGCAGCATCACCCAAACGCGC                           <  1:2419140/36‑1 (MQ=1)
         TAAATCAGTAAGTTGGCAGCATCACCCAAACGCGCA                          <  2:152191/36‑1 (MQ=1)
          AAATCAGTAAGTTGGCAGCATCACCCAAACGCGCAT                         >  1:2011087/1‑36 (MQ=1)
          AAATCAGTAAGTTGGCAGCATCACCCAAACGCGCAT                         >  2:1467096/1‑36 (MQ=1)
          AAAACAGTAAGTTGGCAGCATCACCCAAACGCGCAT                         <  2:1602216/36‑1 (MQ=0)
           AATCAGTAAGTTGGCAGCATCACCCAAACGCGCATC                        >  1:1674561/1‑36 (MQ=1)
           AATCAGTAAGTTGGCAGCATCACCCAAACGCGCATC                        >  1:3571210/1‑36 (MQ=1)
            ATCAGTAAGTTGGCAGCATCACCCAAACGCGCATCA                       <  1:2626169/36‑1 (MQ=1)
            ATCAGTAAGTTGGCAGCATCACCCAAACGCGCATCA                       <  1:171906/36‑1 (MQ=1)
             TCAGTAAGTTGGCAGCATCACCCAAACGCGCATCAG                      <  1:611526/36‑1 (MQ=1)
             TCAGTAAGTTGGCAGCATCACCCAAACGCGCATCAG                      >  1:515710/1‑36 (MQ=1)
              CAGTAAGTTGGCAGCATCACCCAAACGCGCATCAGG                     <  2:3726286/36‑1 (MQ=1)
               AGTTAGTTGGCAGCATCACCCAAACGCGCATCAGGT                    <  2:227134/36‑1 (MQ=12)
               AGTAAGTTGGCAGCATCACCCAAACGCGCATCAGGT                    <  1:2446918/36‑1 (MQ=32)
               AGTAAGTTGGCAGCATCACCCAAACGCGCATCAGGT                    >  1:1948238/1‑36 (MQ=32)
               AGTAAGTTGGCAGCATCACCCAAACGCGCATCAGGT                    <  2:2025732/36‑1 (MQ=32)
               AGTAAGTTGGCAGCATCACCCAAACGCGCATCAGGT                    <  1:1161169/36‑1 (MQ=32)
                aTAAGTTGGCAGCATCACCCAAACGCGCATCAGGTG                   <  1:1015744/35‑1 (MQ=25)
                GTAAGTTGGCAGCATCACCCAAACGCGCATCAGGTG                   <  2:3156121/36‑1 (MQ=35)
                 TAAGTTGGCAGCATCACCCAAACGCGCATCAGGTGC                  >  2:70087/1‑36 (MQ=38)
                 TAAGTTGGCAGCATCACCCAAACGCGCATCAGGTGC                  >  1:2816384/1‑36 (MQ=38)
                  AAGTTGGCAGCATCACCCAAACGCGCATCAGGTGCA                 >  2:1996255/1‑36 (MQ=38)
                     TTGGCAGCATCACCCAAACGCGCATCAGGTGCAACA              <  2:2412724/36‑1 (MQ=38)
                       GGCAGCATCACCCAAACGCGCATCAGGTGCAACATA            <  1:2697561/36‑1 (MQ=38)
                       GGCAGCATCACCCAAACGCGCATCAGGTGCAACATA            >  2:2944891/1‑36 (MQ=38)
                         CAGCATCACCCAAACGCGCATCAGGTGCAACATACA          <  2:883412/36‑1 (MQ=38)
                         CAGCATCACCCAAACGCGCATCAGGTGCAACATACA          >  2:1354970/1‑36 (MQ=38)
                          AGCATCACCCAAACGCGCATCAGGTGCAACATACAT         >  1:16452/1‑36 (MQ=38)
                          AGCATCACCCAAACGCGCATCAGGTGCAACATACAT         >  1:185627/1‑36 (MQ=38)
                           GCATCACCCAAACGCGCATCAGGTGCAACATACATT        >  1:1099974/1‑36 (MQ=38)
                              TCACCCAAACGCGCATCAGGTGCAACATACATTAAT     <  1:2734812/36‑1 (MQ=35)
                               CACCCAAACGCGCATCAGGTGCAACATACATTCATA    >  2:2306084/1‑36 (MQ=12)
                                ACCCAAACGCGCATCAGGTGCAACATACATTAATAA   >  2:611538/1‑36 (MQ=1)
                                 CCCAAACGCGCATCAGGTGCAACATACATTAATAAA  >  1:990292/1‑36 (MQ=1)
                                                                     
ATCATACACTAAATCAGTAAGTTGGCAGCATCACC..................................  >  REL606/547665‑547699
...................................CAAACGCGCATCAGGTGCAACATACATTAATAAA  >  REL606/555924‑555957

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG