Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp intergenic (‑14/‑514) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16972 =0 (0.070)62 (1.130) 23/70 1.1 100% intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 588495 = NA (NA)noncoding (1/1977 nt) IS150 repeat region
* ? REL606 = 169740 (0.000)52 (1.000) 27/66 0.6 100% intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 590471 NA (NA)noncoding (1977/1977 nt) IS150 repeat region

AGAGAAAAGCCCCGAGTGATATTTTACTATCAACC..................................  <  REL606/17006‑16972
...................................TGTACTGCACCCATTTTGTTGGACGATGAAATGG  >  REL606/588495‑588528
                                                                     
AGAGAAAAGCCCCGAGTGATATTTTACTATCAACCT                                   >  1:50335/1‑36 (MQ=255)
AGAGAAAAGCCCCGAGTGATATTTTACTATCAACCT                                   >  2:208611/1‑36 (MQ=255)
 GAGAAAAGCCCCGAGTGATATTTTACTATCAACCTG                                  <  1:2171522/36‑1 (MQ=255)
  AGAAAAGCCCCGAGTGATATTTTACTATCAACCTGT                                 >  1:922425/1‑36 (MQ=255)
   GAAAAGCCCCGAGTGATATTTTACTATCAACCTGTA                                >  2:1016072/1‑36 (MQ=255)
    AAAAGCCCCGAGTGATATTTTACTATCAACCTGTAC                               >  1:2447902/1‑36 (MQ=255)
    AAAAGCCCCGAGTGATATTTTACTATCAACCTGTAC                               >  1:857310/1‑36 (MQ=255)
      AAGCCCCGAGTGATATTTTACTATCAACCTGTACTG                             >  2:1349384/1‑36 (MQ=255)
      AAGCCCCGAGTGATATTTTACTATCAACCTGTACTG                             >  1:1711134/1‑36 (MQ=255)
       AGCCCCGAGAGATATTTTACTATCAACCTGTACTGC                            <  2:2338448/36‑1 (MQ=255)
           CCGAGTAATATTTTACTATCAACCTGTACTGCACCC                        <  2:3338943/36‑1 (MQ=255)
             GAGTGATATTTTACTATCAACCTGTACTGCACCCAT                      >  1:2469321/1‑36 (MQ=255)
              AGTGATATTTTACTATCAACCTGTACTGCACCCATT                     >  2:2274288/1‑36 (MQ=255)
              AGTGATATTTTACTATCAACCTGTACTGCACCCATT                     >  1:270010/1‑36 (MQ=255)
                TGATATTTTACTATCAACCTGTACTGCACCCATTTT                   >  2:3210246/1‑36 (MQ=255)
                TGATATTTTACTATCAACCTGTACTGCACCCATTTT                   >  1:1493817/1‑36 (MQ=255)
                TGATATTTTACTATCAACCTGTACTGCACCCATTTT                   <  2:3570569/36‑1 (MQ=255)
                TGATATTTTACTATCAACCTGTACTGCACCCATTTT                   >  2:1218891/1‑36 (MQ=255)
                  ATATTTTACTATCAACCTGTATTGCACCCATTTTGT                 >  1:2257065/1‑36 (MQ=255)
                  ATATTTTACTATCAACCTGTACTGCACCCATTATGT                 >  2:1051305/1‑36 (MQ=255)
                   TATTTTACTATCAACCTGTACTGCACCCATTTTGTT                <  1:73612/36‑1 (MQ=255)
                   TATTTTACTATCAACCTGTACTGCACCCATTTTGTT                >  1:125870/1‑36 (MQ=255)
                    ATTTTACTATCAACCTGTACTGCACCCATTTTGTTG               >  1:3322049/1‑36 (MQ=255)
                    ATTTTACTATCAACCTGTACTGCACCCATTTTGTTG               <  2:1551563/36‑1 (MQ=255)
                    ATTTTACTATCAACCTGTACTGCACCCATTTTGTTG               >  1:1495778/1‑36 (MQ=255)
                    ATTTTACTATCAACCTGTACTGCACCCATTTTGTTG               <  1:1325593/36‑1 (MQ=255)
                     TTTTACTATCAACCTGTACTGCACCCATTTTGTTGG              >  2:2529925/1‑36 (MQ=255)
                      TTTACTATCAACCTGTACTGCACCCATTTTGTTGGA             >  1:1969473/1‑36 (MQ=255)
                       TTACTATCAACCTGTACTGCACCCATTTTGTTGGAC            <  2:1879428/36‑1 (MQ=255)
                       TTACTATCAACCTGTACTGCACCCATTTTGTTGGAC            >  2:2533140/1‑36 (MQ=255)
                        TACTATCAACCTGTACTGCACCCATTTTGTTGGACG           <  2:2000390/36‑1 (MQ=255)
                        TACTATCAACCTGTACTGCACCCATTTTGTTGGACG           >  1:2844169/1‑36 (MQ=255)
                          CTATCAACCTGTACTGCACCCATTTTGTTGGACGAT         >  1:2521671/1‑36 (MQ=255)
                          CTATCAACCTGTACTGCACCCATTTTGTTGGACGAT         >  2:735209/1‑36 (MQ=255)
                          CTATCAACCTGTACTGCACCCATTTTGTTGGACGAT         >  1:984453/1‑36 (MQ=255)
                          CTATCAACCTGTACTGCACCCATTTTGTTGGACGAT         <  2:1901311/36‑1 (MQ=255)
                          CTATCAACCTGTACTGCACCCATTTTGTTGGACGAT         >  2:2422059/1‑36 (MQ=255)
                           TATCAACCTGTACTGCACCCATTTTGTTGGACGATG        <  1:1182391/36‑1 (MQ=255)
                           TATCAACCTGTACTGCACCCATTTTGTTGGACGATG        <  2:125881/36‑1 (MQ=255)
                            ATCAACCTGTACTGCACCCATTTTGTTGGACGATGA       >  2:2539543/1‑36 (MQ=255)
                            ATCAACCTGTACTGCACCCATTTTGTTGGACGATGA       >  1:1225224/1‑36 (MQ=255)
                            ATCAACCTGTACTGCACCCATTTTGTTGGACGATGA       <  2:1208814/36‑1 (MQ=255)
                            ATCAACCTGTACTGCACCCATTTTGTTGGACGATGA       >  2:3420916/1‑36 (MQ=255)
                            ATCAACCTGTACTGCACCCATTTTGTTGGACGATGA       >  1:3454125/1‑36 (MQ=255)
                            ATCAACCTGTACTGAACCCATTTTGTTGGACGATGA       >  2:3110478/1‑36 (MQ=255)
                             TCAACCTGTACTGCACCCATTTTGTTGGACGATGAA      >  1:744184/1‑36 (MQ=255)
                              CAACCTGTACTGCACCCATTTTGTTGGACGATGAAA     >  2:167270/1‑36 (MQ=40)
                              CAACCTGTACTGCACCCATTTTGTTGGACGATGAAA     >  1:2878251/1‑36 (MQ=40)
                              CAACCTGTACTGCACCCATTTTGTTGGACGATGAAA     <  2:1035457/36‑1 (MQ=40)
                               AACCTGTACTGCACCCATTTTGTTGGACGATGTAAT    >  2:925445/1‑36 (MQ=255)
                               AACCTGTACTGCACCCATTTTGTTGGACGATGATAT    >  1:2647117/1‑36 (MQ=255)
                               AACCTGTACTGCACCCATTTTGTTGGACGATGAAAT    <  2:1584522/36‑1 (MQ=38)
                               AACCTGTACTGCACCCATTTTGTTGGACGATGAAAT    >  1:3697993/1‑36 (MQ=38)
                               AACCTGTACTGCACCCATTTTGTTGGACGATGAAAT    >  1:3084830/1‑36 (MQ=38)
                               AACCTGTACTGCACCCATTTTGTTGGACGATGAAAT    >  1:2444431/1‑36 (MQ=38)
                               AACCTGTACTGCACCCATTTTGTTGGACGATGAAAT    >  1:1082745/1‑36 (MQ=38)
                                ACCTGTACTGCACCCATTTTGTTGGACGATGAAATG   >  2:3234726/1‑36 (MQ=35)
                                ACCTGTACTGCACCCATTTTGTTGGACGATGAAATG   >  1:3078541/1‑36 (MQ=35)
                                ACCTGTACTGCACCCATTTTGTTGGACGATGAAATG   <  2:3552195/36‑1 (MQ=35)
                                 CCTGTACTGCTCCCATTTTGTTGGACGATGAAATGG  >  1:3685946/1‑36 (MQ=12)
                                 CCTGTACTGCACCCATTTTGTTGGACGATGAAATGG  >  2:1018846/1‑36 (MQ=32)
                                 CCTGTACTGCACCCATTTTGTTGGACGATGAAATGG  <  2:2619955/36‑1 (MQ=32)
                                                                     
AGAGAAAAGCCCCGAGTGATATTTTACTATCAACC..................................  <  REL606/17006‑16972
...................................TGTACTGCACCCATTTTGTTGGACGATGAAATGG  >  REL606/588495‑588528

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 24 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG