Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,357,0120G→T62.3% 81.0151intergenic (‑345/‑129)rrsD/yrdA16S ribosomal RNA/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (0/81):  ref base (12/37):  total (13/138)

Only 100 of 162 total aligned reads displayed.

TTTTTTGCACAAGTATTTTTTTGA.TC.T.T.T.TT.T.T.C.TGT.TTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCA  >  REL606/3356977‑3357047
                                            |                                    
ttttttGCACAAGTATTTTTTTGA.TC.T.T.T.TT.T.T.C.tg                                      <  2:2706947/36‑1 (MQ=255)
      gCACAAGTATTTTTTTGA.TC.T.T.T.TT.T.T.C.tgt.ttgtt                               <  1:1120976/36‑1 (MQ=255)
      gCACAAGTATTTTTTTGA.TC.T.T.T.TT.T.T.C.tgt.ttgtt                               >  2:480454/1‑36 (MQ=255)
      gCACAAGTATTTTTTTGA.TC.T.T.T.TT.T.T.C.tgt.ttgtt                               >  1:1955608/1‑36 (MQ=255)
       cacaAGTATTTTTTTGA.TC.T.T.T.TT.T.T.C.TGT.ttgttg                              <  2:1861217/36‑1 (MQ=255)
         caAGTATTTTTTTGA.TC.T.T.T.TT.T.T.C.TGT.TTgttgtt                            >  2:150308/1‑36 (MQ=255)
          ttgTATTTTTTTCT.TT.T.T.T.TT.T.T.T.TTT.TTCTTTttt                           <  2:3166042/34‑1 (MQ=2)
          taGTTTTTTTTTG..TT.T.T.T.TT.T.T.C.TTT.TTTTTTtttt                          <  2:3725943/35‑1 (MQ=2)
          atttATTTTTCTTT.TC.T.T.T.TT.T.T.C.TTT.TTTTTTttt                           <  2:3068967/33‑1 (MQ=2)
           tttATTTTTTTGT.TT.T.T.G.TT.T.T.G.TTT.TTTTTTtttt                          <  2:3635176/34‑1 (MQ=2)
           tttATTCTTTAGT.TC.T.T.T.TT.T.T.A.TTT.TTTTTTtttt                          <  1:2780546/34‑1 (MQ=2)
           tttATCTTTTTTT.TC.T.T.T.TT.T.T.C.TTT.TTTTTTtttt                          <  2:3328797/34‑1 (MQ=2)
           tgTATTTTTTT.A.T..T.T.T.TC.T.T.T.TTT.TTGTTTtttttt                        <  1:3006721/35‑1 (MQ=9)
           tgTATTTTGTTTT.TC.T.T.T.TT.T.T...TGT.TTTTTTttttt                         <  2:2831109/35‑1 (MQ=0)
           gttATTTTTTTGT.TT.A.T.T.TT.T.T.T.TTT.TTTTTTtttt                          <  2:2960734/34‑1 (MQ=9)
            ttttttttttTA.TA.T.T.T.TT.T.T.C.TAT.TTGTTTttttt                         <  2:3599358/33‑1 (MQ=12)
            ttttttttttGT.TA.T.T.T.TT.T.T.T.TTT.CTGTTTttttt                         <  2:2901269/33‑1 (MQ=2)
            ttttttttttCT.TC.T.T.T.TT.G.T.T.TTT.TTGTTTttttt                         <  2:2940322/33‑1 (MQ=2)
            ttgtttttttTT.TC...T.T.TT.T.T.C.TGT.TTCTTTtttttt                        <  2:3525773/33‑1 (MQ=2)
            ttgtttttttTA.TC.T.T.T.TT.T.T.C.TTT.TTTTTTttttt                         <  2:3460934/33‑1 (MQ=12)
            ttcttttattTA.TC.T.T.T.TT.T.T.T.TTT.TTTTTTttttt                         <  1:3633497/33‑1 (MQ=0)
            tcgtttttttG..TT.T.T.T.TT.T.T.C.TTT.TTTTTTtttttt                        <  2:3049520/33‑1 (MQ=2)
            gTATTTTTTTCA.TC.T.T.T.TT.T.T.C.TGT.TTGTTGttttt                         >  2:2030423/1‑36 (MQ=255)
            ctttttttttTC.TC.T.T.T.TT.T.T...TCT.TTTTTTtttttt                        <  2:3507277/33‑1 (MQ=2)
            ctgtttttttGA.TT.T.T.T.TT.T.T.T.TTT.TTTTTTttttt                         <  1:2760623/33‑1 (MQ=9)
            ctATTTTTTTG..TA.T.T.T.TT.T.T.T.TTT.TTTTTTtttttt                        <  1:3160678/35‑1 (MQ=0)
            atttttttttGT.TT.T.T.T.TA.T.T.T.TGT.TTTTTTttttt                         <  2:3699113/33‑1 (MQ=9)
            atATTTTTTTTT.TC.T.T.T.TT.T.T.C.TTT.TTTTTTttttt                         <  2:3338279/35‑1 (MQ=12)
             tttttttttGT.TT.T.T.C.TT.T.T.T.TTC.TTTTTGtttttt                        <  2:3423611/34‑1 (MQ=2)
             tttttttttGT.TC.T.T.T.TT.T.T.T.TTT.TTATTTcttttt                        <  2:3233956/34‑1 (MQ=2)
             tttttttttGT.TC.T.T.T.TA.T.T...TTT.TTGTTTttttttt                       <  2:3571376/34‑2 (MQ=0)
             ttttttttaGT.TC.T.T.T.TT.T.T.T.TTT.GTTTTTtttttt                        <  1:68746/34‑1 (MQ=0)
             tttttgtttGT.CC.T.T.T.TT.T.T.C.TTT.TTGTTTtttttt                        <  2:3224117/34‑1 (MQ=9)
             tgtttttttG..TT.T.T.T.TG.T.T.T.TGT.TTTTTTttttttt                       <  1:3349340/34‑2 (MQ=12)
             tgttttcttTA.TCTT.T.T.TT.T.T.C.TAT.TTCTTTttttt                         <  2:3681032/34‑1 (MQ=0)
             tctttttttTT.TC.T.T.T.TT.T.T...TTT.TTATTAttttttt                       <  2:3049533/34‑2 (MQ=0)
             tcttttgttTA.TC.T.T.T.TT.T.T.T.TTT.TTTTTTtttttt                        <  1:3451911/34‑1 (MQ=2)
             tATTTTATTTT.TC.T.T.T.TT.T.T.T.TTT.TTTTTCtttttt                        <  1:3561323/36‑1 (MQ=0)
             tATTATTTTG..TT.T.T.T.TT.T.T.T.TTT.TTGTTGttttttt                       <  2:2791315/36‑2 (MQ=2)
             gttttttttGT.TT.T.T.T.GT.T.T.T.GTT.TTTTTGtttttt                        <  2:3553093/34‑1 (MQ=2)
             gttttttgtGT.TT.T.T.T.TT.T.T.C.T.T.TTGTTTttttttt                       <  2:3291132/34‑2 (MQ=2)
             gtttttcttGA.TC.T.T.T.TT.T.T.T.TTT.TTTTTTtttttt                        <  1:3730625/34‑1 (MQ=9)
             gctttttttTT.TC.T.T.T.TT.T.T...TTT.TTCTTTttttttg                       <  2:3376053/34‑2 (MQ=0)
             gaTTTTGTTTT.TC.T.T.T.TT.T.T.T.TTT.TTTTTTtttttt                        <  2:2778035/35‑1 (MQ=0)
             ctttttcttGT.TG.T.T.T.TT.T.T.T.TTT.TTCTTTtttttt                        <  2:2870397/34‑1 (MQ=2)
             cggtttttcTA.TT.T.T.T.TT.T.G.T.TTT.TTGTTGtttttt                        <  2:3617270/33‑1 (MQ=2)
             cctttttttCT.TC.T.T.T.TT.T.T.T.TTT.TTTTTTtttttt                        <  2:3328767/34‑1 (MQ=2)
             caTTTTTTTCT.TC.T.T.TCTT.T.T.T.TTT.TTTTTGttttt                         <  2:3498076/35‑1 (MQ=2)
              ttttttttTT.TT.T.T.T.TT.T.T.G.TTG.TTGTTTttttttg                       <  2:3078788/35‑2 (MQ=2)
              ttttttttTA.TC.T.T.T.TT.TCT.T.TTT.TTTTTCtttttt                        <  2:2930924/35‑1 (MQ=2)
              ttttttttGT.TT.T.G.T.TG.T.T.T.TGT.TGTTTGttttttt                       <  2:844494/35‑2 (MQ=0)
              ttttttttGC.TT.TCT.T.TT.T.T.T.TCT.TTTTTGtttttt                        <  2:3253044/35‑1 (MQ=0)
              ttttttttGA.TG.T.T.T.TTCT.T.T.TCT.TTTTTTtttttt                        <  1:3405735/35‑1 (MQ=0)
              ttttttttCT.TT.T.T.T.TT.T.T.T.TGTGTTTTTGtttttt                        <  2:3127379/35‑1 (MQ=2)
              ttttttgtGT.TT.T.G.T.TT.T.T.T.TGT.TTTTTTttttttt                       <  2:3214593/35‑2 (MQ=2)
              tgttttgtGT.TT.T.T.T.TT.T.T.G.TTT.TTGTTTttttttt                       <  1:2760573/34‑2 (MQ=2)
              tcttttttTT.TC.T.T.T.TT.T.T...TGT.CTGTTTGTTTTTct                      <  2:3717029/34‑2 (MQ=0)
              ctttttttGT.TT.T.T.T.TC.T.T.T.TTT.TTCTTTttttttt                       <  2:3291033/35‑2 (MQ=2)
              ctttttttG..TT.T.T.T.TT.T.T.C.TTT.TTTTTTTTTTTTct                      <  2:3525816/35‑2 (MQ=2)
              ctttatttGT.TT.T.T.T.TT.T.G.T.TGT.TTTTTTttttttt                       <  2:3543707/35‑2 (MQ=2)
              aTTTTTTTTT.TC.T.T.T.TT.T.T.T.TCT.TTCTTTTTTTCTc                       >  2:639598/1‑36 (MQ=2)
              aTTTTTTTGA.TT.G.T.T.TT.T.T.T.TTT.TCTTTCttttttt                       <  2:3414295/36‑2 (MQ=2)
              aTTTTTTTGA.TC.T.T.T.TT.T.T.C.TGT.TTGTTGTTTTTTc                       <  2:1489260/36‑1 (MQ=255)
               tttttttTT.TT.T.T.G.TT.T.T.CTTTT.TTGTTGttttttt                       <  2:3039719/36‑2 (MQ=2)
               tttttttTT.TC.T.T.T.TG.T.T...TTT.TTGTTTttttttgtt                     <  2:3243221/36‑4 (MQ=0)
               tttttttTG.TT.T.T.T.TT.T.T.C.TTT.TTGTTCTTTTTTct                      <  2:3338294/36‑2 (MQ=12)
               tttttttTG.TT.T.T.T.TT.G.T.T.TTT.TTGTTGttgtttgt                      <  2:3020148/36‑3 (MQ=2)
               tttttttTA.TT.T.T.G.TT.T.T.C.TGT.TTTTTTtttttttt                      <  2:3562518/36‑3 (MQ=2)
               tttttttGT.TT.T.T.T.TT.C.T.C.T.T.TTGTTTTGTTTTctt                     <  1:3479333/36‑3 (MQ=0)
               tttttttGT.TT.T.T.T.TG.T.T.T.TTT.TTCTTTTTTTTTct                      <  2:3690005/36‑2 (MQ=0)
               tttttttGT.TC.T.T.T.TT.T.T.T.TTTCTTTTTGttttttt                       <  1:2849565/36‑2 (MQ=2)
               tttttttGA.TT.T.T.T.TT.TGT.C.TTT.TTTTTTttttttt                       <  1:3615383/36‑2 (MQ=9)
               tttttttGA.T..T.T.T.TT.T.T.C.TTT.TTTTTCttttttttt                     <  2:3498009/36‑4 (MQ=9)
               tttttttG..TG.T.T.T.AT.T.T.T.TGT.TTTTTTttttttttt                     <  2:3393131/36‑4 (MQ=2)
               tttttttCT.TC.T.T.T.TT.T.T...TCT.TTATTTttttttttt                     <  1:2800152/36‑4 (MQ=2)
               tttttttAA.TT.T.T.T.TT.T.TAG.TTT.TTGTTTttttttt                       <  2:3743376/36‑2 (MQ=2)
               ttttttcTA.TT.T.T.T.TT.T.T.T.TCT.TTCTTTtttttttt                      <  2:3507220/36‑3 (MQ=2)
               tttttgtGT.TT.T.T.T.TT.T.T.C.TTT.CTTTTTtttttttt                      <  2:2920789/36‑3 (MQ=2)
               tttgtttTA.TC.T.T.T.TT.T.T.T.TCT.TTTTTTtttttttt                      <  2:3010165/36‑3 (MQ=0)
               gttttttTC.TC.T.C.T.TT.T.T.T.TGT.TTTTTTtttttttt                      <  2:2750857/35‑3 (MQ=2)
               cttttttCG.TC.T.T.T.TT.T.T.T.TTT.TTTTTTtttttttt                      <  2:3690010/35‑3 (MQ=0)
               attttttTC.TT.T.T.T.TT.T.T.T.TGT.TTTTTCtttttttt                      <  2:3010287/35‑3 (MQ=9)
                ttttttTC.TT.T.T.T.GT.T.T.C.TTT.TTGTTTttttttttt                     <  2:3127276/36‑4 (MQ=0)
                ttttttGT.TT.T.TGT.TT.T.T.C.T.T.TTGTTTttttttttt                     <  2:3732058/36‑4 (MQ=2)
                ttttttGT.TT.T.T.T.TT.T.T.T.CTT.TTTTTGttttttttc                     <  2:3507124/36‑4 (MQ=9)
                ttttttGG.TG.T.T.T.TT.T.T.T.TTT.TTGTTTtttttttgt                     <  2:202943/36‑4 (MQ=2)
                ttttttGA.TT.C.C.T.TT.A.T.T.TGT.TTTTTGttttttttg                     <  2:3020160/36‑4 (MQ=2)
                ttttttGA.TC.T.T.TCTA.G.T.C.TCT.TTTTTTtttttttt                      <  2:3432967/36‑3 (MQ=0)
                tttcttGT.TG.T.T.T.TT.T.T.T.TGT.TTTTTTttttttttt                     <  2:3281766/36‑4 (MQ=2)
                ctttttGAGTT.T.T.T.TT.T.T.T.TTT.TTGTTGtttttttt                      <  2:2888885/35‑3 (MQ=2)
                 tttttGT.TC.T.T.T.TT.T.TGG.TGT.TTTTTCttttttttt                     <  2:3608448/36‑4 (MQ=2)
                 tttttGA.TC.T.T.T.TT.T.T.C.TGT.TTGTTGTTTTTTCatc                    >  2:2970731/1‑34 (MQ=255)
                 tttttGA.TC.T.T.T.TT.T.T.C.TGT.TTGTTGTTTTTTCAcc                    >  2:2961690/1‑36 (MQ=255)
                     tGA.TC.T.T.T.TT.T.T.C.TGT.TTGTTGTTTTTTCACCCttt                >  1:2114620/1‑36 (MQ=255)
                              t.t.tt.t.t.C.TGT.TTGTTGTTTTTTCACCCTTTTtgttg          >  1:294242/1‑36 (MQ=255)
                              t.t.tt.t.t.C.TGT.TTGTTGTTTTTTCACCCTTTTtgctg          <  2:3134578/36‑1 (MQ=255)
                                     t.t.C.TGT.TTGTTGTTTTTTCACCCTTTTTGCTGCAAt      >  2:372498/1‑36 (MQ=255)
                                     t.t.C.TGT.TTGTTGTTTTTTCACCCTTTTTGCTGCAAt      <  1:2541083/36‑1 (MQ=255)
                                       t.C.TGT.TTGTTGTTTTTTCGCCCTTTTTGCTGCAATc     <  1:879231/36‑1 (MQ=255)
                                            gt.ttgttGTTTTTTCACCCTTTTTGCTGCAATCGca  <  1:1409564/36‑1 (MQ=255)
                                            |                                    
TTTTTTGCACAAGTATTTTTTTGA.TC.T.T.T.TT.T.T.C.TGT.TTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCA  >  REL606/3356977‑3357047

Base quality scores:  ATCG  < 3 ≤  ATCG  < 5 ≤  ATCG  < 8 ≤  ATCG  < 18 ≤  ATCG  < 32 ≤  ATCG