New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 144001848 (1.170)3 (0.070) 3/52 5.3 5.9% coding (894/1500 nt) feaB phenylacetaldehyde dehydrogenase
?REL606 = 4081044 47 (0.850)intergenic (+132/‑128) sodA/kdgT superoxide dismutase, Mn/2‑keto‑3‑deoxygluconate permease
Rejected: Position hash score below cutoff.

TGATGACCGGAAGC........................  >  REL606/1440005‑1440018
.......................CGCTGTTTTATTTTT  <  REL606/4081044‑4081030
              |||||||||               
TGATGACCGGAAGCATTGGATGGCGCTGTTTTATTT    >  1:1066215/1‑36 (MQ=255)
 GATGACCGGAAGCATTGGATGGCGCTGTTTTATTTT   >  1:2087577/1‑36 (MQ=255)
  ATGACCGGAAGCATTGGATGGCGCTGTTTTATCTTT  >  1:1136358/1‑36 (MQ=255)
              |||||||||               
TGATGACCGGAAGC........................  >  REL606/1440005‑1440018
.......................CGCTGTTTTATTTTT  <  REL606/4081044‑4081030

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 21 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG