Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3893578–3894995 | 3901930 | 6936–8353 | 16 [14] | [1] 40 | insJ‑5–[yieO] | insJ‑5, insK‑5, rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3652533 | NA (NA) | 34 (0.650) | 23/66 | 0.9 | 97.1% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901931 = | 1 (0.020) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTG > REL606/3652501‑3652568
|
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAAAc > 2:3264113/1‑36 (MQ=35)
gtTTAACTGTCCAACTTTTTGGGGTCAGTACAAACt > 1:1061626/1‑36 (MQ=38)
tttAACTGTCCAACTTTTTGGGGTCAGTACAAACtt > 2:708158/1‑36 (MQ=40)
tttAACTGTCCAACTTTTTGGGGTCAGTACAAACtt < 1:25821/36‑1 (MQ=40)
ttAACTGTCCAACTTTTTGGGGTCAGTACAAACttt < 1:3608504/36‑1 (MQ=255)
tAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTg < 1:1872431/36‑1 (MQ=255)
tAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTg < 1:2695321/36‑1 (MQ=255)
tAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTg > 1:532705/1‑36 (MQ=255)
aaCTGTCCAACTTTTTGGGGTCAGTACAAACTTTGa > 2:206615/1‑36 (MQ=255)
aCTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAt < 2:4323/36‑1 (MQ=255)
cTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAtt < 1:2221190/36‑1 (MQ=255)
tGTCCAACTTTTTGGGGTCAGTACAAACTTTGAttt < 1:3350917/36‑1 (MQ=255)
tGTCCAACTTTTTGGGGTCAGTACAAACTTTGAttt < 2:2545935/36‑1 (MQ=255)
tcgaaCTTTTTGGGGTCAGTACAAACTTTGATTtat < 1:3240468/33‑1 (MQ=255)
ccAACTTTTTGGGGTCAGTACAAACTTTGATTtata > 2:152383/1‑36 (MQ=255)
cAACTTTTTGGGGTCAGTACAAACTTTGATTTATAg < 2:417568/36‑1 (MQ=255)
cAACTTTTTGGGGTCAGTACAAACTTTGATTTATAg > 2:2821518/1‑36 (MQ=255)
cAACTTTTTGGGGTCAGTACAAACTTTGACTTATAg > 2:2061094/1‑36 (MQ=255)
cAACTGGTTGGGGTCAGTACAAACTTTGATTTATAg < 2:958606/36‑1 (MQ=37)
aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAGt < 1:469920/36‑1 (MQ=255)
aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAGt > 2:2168476/1‑36 (MQ=255)
aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAGt < 1:1600294/36‑1 (MQ=255)
aaCTTTTTGGGGTCAGTACAAACTTTGATTTATAGt < 2:979637/36‑1 (MQ=255)
aCTTTTTGGGGTCAGTACAAACTTTGATTTATAGTc < 1:2659049/36‑1 (MQ=255)
aCTTTTTGGGGTCAGTACAAACTTTGATTTATAGTc < 2:2801615/36‑1 (MQ=255)
aCTTTTTGGGGTCAGTACAAACTTTGATTTATAGTc > 1:2224177/1‑36 (MQ=255)
aCTTTTTGGGGTCAGTACAAACTATGATTTATAGTc > 1:880788/1‑36 (MQ=255)
tttttGGGGTCAGTACAAACTTTGATTTATAGTCAg > 2:3329835/1‑36 (MQ=255)
tttttGGGGTCAGTACAAACTTTGATTTATAGTCAg < 2:1688664/36‑1 (MQ=255)
tttttGGGGTCAGTACAAACTTTGATTTATAGTCAg > 2:1132247/1‑36 (MQ=255)
ttttGGGGTCAGTACAAACTTTGATTTATAGTCAgg > 1:2208984/1‑36 (MQ=255)
tttGGGGTCAGTACAAACTTTGATTTATAGTCAGGt < 1:1789773/36‑1 (MQ=255)
tttGGGGTCAGTACAAACTTTGATTTATAGTCAGGt < 2:1319288/36‑1 (MQ=255)
tttGGGGTCAGTACAAACTTTGATTTATAGTCAGGt < 1:3732144/36‑1 (MQ=255)
tttGGGGTCAGTACAAACTTTGATTTATAGTCAGGt < 2:3085013/36‑1 (MQ=255)
ggggTCAGTACAAACTTTGATTTATAGTCAGGTggg < 2:3567845/36‑1 (MQ=255)
ggTCAGTACAAACTTTGATTTATAGTCAGGTGGGGc < 1:1028952/36‑1 (MQ=255)
tCAGTACAAACTTTGATTTATAGCCAGGTGGGGCtt > 2:2083782/1‑36 (MQ=255)
cAGTACAAACTTTGATTTATAGTCAGGTGGGGCttt < 2:1858197/36‑1 (MQ=255)
cAGTACAAACTTTGATTTATAGTCAGGTGGGGCttt < 1:152372/36‑1 (MQ=255)
aGTACAAACTTTGATTTATAGTCAGGTGGGGCtttt < 2:2972071/36‑1 (MQ=255)
gTACAAACTTTGATTTATAGTCAGGTGGGGCTTTtc < 2:2052653/36‑1 (MQ=255)
tACAAACTTTGATTTATAGTCAGGTGGGGCTTTtct < 1:2600592/36‑1 (MQ=255)
aCAAACTTTGATTTATAGTCAGGTGGGGCTTTtctc < 1:3009665/36‑1 (MQ=255)
aaaCTTTGATTTATAGTCAGGTGGGGCTTTTctctt > 1:2599701/1‑35 (MQ=255)
aaaCTTTGATTTATAGTCAGGTGGGGATTTTCtttg > 1:2916888/1‑36 (MQ=37)
|
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTG > REL606/3652501‑3652568
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 24 ≤
ATCG
< 30 ≤
ATCG
< 32 ≤
ATCG
|