Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp coding (573‑575/1041 nt) ynjI ← predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1821525 =1 (0.060)59 (1.140) 39/66 0.1 98.3% coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 18215270 (0.110)57 (1.070) 27/68 0.6 100% coding (573/1041 nt) ynjI predicted inner membrane protein
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

Only 100 of 125 total aligned reads displayed.

TCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATA  >  REL606/1821492‑1821562
                                   |                                   
tcctccATGTTTGCTTTAAAGGTATTGGCTCCATgg                                     <  2:1406913/36‑1 (MQ=255)
 cctccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                    >  1:2803284‑M1/1‑35 (MQ=255)
 cctccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                    >  1:1989677‑M1/1‑35 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaTGGt                                    <  1:2314910‑M1/4‑1 (MQ=255)
  tttcatcgtccaacaaactgggtgcagtacaTGGTc                                   <  1:699940‑M1/5‑1 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                   >  2:1737896‑M1/32‑36 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                   >  2:2106404‑M1/32‑36 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                  <  2:156332‑M1/6‑1 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                  <  2:3235400‑M1/6‑1 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaTGGTCGc                                 <  2:1882626‑M1/7‑1 (MQ=255)
    ccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtg                                 <  2:1633966‑M1/36‑5 (MQ=255)
     catcgtccaacaaaatgggtgcagtacaTGGTCGcc                                >  1:231739‑M1/29‑36 (MQ=255)
     cATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtag                                >  2:3153073‑M1/1‑31 (MQ=255)
     cATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtac                                >  2:2272166‑M1/1‑31 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaTGGTCGCCa                               <  2:1560518‑M1/9‑1 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaTGGTCGCCa                               <  2:3554424‑M1/9‑1 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaTGGTCGCCa                               >  2:1940185‑M1/28‑36 (MQ=255)
      aTGTTTGCTTTAAAGGTATTGGCTCCATGGtgtact                               <  2:3391765‑M1/36‑7 (MQ=255)
       tcgtccaacaaaatgggtgcagtacaTGGTCGCCag                              >  1:2388242‑M1/27‑36 (MQ=255)
        gTTTGCTTTAAAGGTATTGGCTCCATGGtgtactga                             <  1:1699419‑M1/36‑9 (MQ=255)
        cgtccaacaaaatgggtgcagtacaTGGTCGCCaga                             >  2:747815‑M1/26‑36 (MQ=255)
         tttGCTTTAAAGGTATTGGCTCCATGGtgtactgtc                            >  1:532498‑M1/1‑27 (MQ=255)
         tttGCTTTAAAGGTATTGGCTCCATGGtgtactgac                            <  1:1482684‑M1/36‑10 (MQ=255)
         tttGCTATAAAGGTATTGGCTCCATGGtgtactgac                            <  1:1853033‑M1/36‑10 (MQ=255)
         gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                            >  1:3157173‑M1/25‑36 (MQ=255)
          ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                           <  1:2590613‑M1/36‑11 (MQ=255)
          ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                           <  1:1517462‑M1/36‑11 (MQ=255)
          ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                           >  1:2061092‑M1/1‑26 (MQ=255)
          ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                           <  1:224650‑M1/36‑11 (MQ=255)
          tccaacagaatgggtgcagtacaTGGTCGCCagaaa                           >  2:2796397‑M1/24‑36 (MQ=255)
           ccaacaaaatgggtgcagtacaTGGTCGCCagaaag                          <  2:672536‑M1/14‑1 (MQ=255)
             aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                        >  2:454845‑M1/21‑36 (MQ=255)
               ttATAGGTATTGGCTCCATGGtgtactgaccccaaa                      <  2:1135572‑M1/36‑16 (MQ=255)
               ttAAAGGTATTAGCTCCATGGtgtactgaccccaaa                      <  1:1715854‑M1/36‑16 (MQ=255)
               ttAAAGATATTGGCTCCATGGtgtactgaccccaaa                      <  2:2416511‑M1/36‑16 (MQ=255)
               caaaatgggtgcagtacaTGGTCGCCAGAAAGaaaa                      <  2:639754‑M1/18‑1 (MQ=255)
               caaaatgggtgcagtacaTGGTCGCCAGAAAGaaaa                      <  1:943853‑M1/18‑1 (MQ=255)
                tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                     >  1:3192482‑M1/1‑20 (MQ=255)
                tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                     >  2:1145078‑M1/1‑20 (MQ=255)
                aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                     >  2:3461338‑M1/18‑36 (MQ=255)
                aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                     <  2:3255749‑M1/19‑1 (MQ=255)
                aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                     >  2:862896‑M1/18‑36 (MQ=255)
                 aaatgggtgcagtacaTGGTCGCCAGAAAGAAAATg                    <  2:3367653‑M1/20‑1 (MQ=255)
                 aaatgggtgcagtacaTGGTCGCCAGAAAGAAAATg                    >  2:1265558‑M1/17‑36 (MQ=255)
                 aaaGGTATTGGCTCCATGGtgtactgaccccataaa                    >  2:34333‑M1/1‑19 (MQ=255)
                 aaaGGTATTGGCTCCATGGtgtactgaccccaaaaa                    >  2:2139593‑M1/1‑19 (MQ=255)
                  aatgggtgcagtacaTGGTCGCCAGAAAGAAAATGc                   <  1:1153850‑M1/21‑1 (MQ=255)
                  aatgggtgcagtacaTGGTCGCCAGAAAGAAAATGc                   <  1:1345479‑M1/21‑1 (MQ=255)
                  aaGGTATTGGCTCCATGGcgtactgaccccaaaaag                   >  2:2441211‑M1/1‑18 (MQ=255)
                   atgggtgcagtacaTGGTCGCCAGAAAGAAAATGCt                  <  1:3381572‑M1/22‑1 (MQ=255)
                   atgggtgcagtacaTGGTCGCCAGAAAGAAAATGCt                  >  1:1068183‑M1/15‑36 (MQ=255)
                   aGGTATTGGCTCCATGGtgtactgaccccaaaaagt                  >  1:3501010‑M1/1‑17 (MQ=255)
                    tgggtgcagtacaTGGTCGCCAGAAAGAAAATGCTc                 <  1:509459‑M1/23‑1 (MQ=255)
                    ggTATTGGCTCCATGGtgtactgaccccaaaaagtt                 >  1:1143090‑M1/1‑16 (MQ=255)
                     gggtgcagtacaTGGTCGCCAGAAAGAAAATGCTcc                <  1:1211114‑M1/24‑1 (MQ=255)
                     gggtgcagtacaTGGTCGCCAGAAAGAAAATGCTcc                >  1:3085215‑M1/13‑36 (MQ=255)
                     gTATTGGCTCCATGGtgtactgaccccaaaaagttg                <  2:3571166‑M1/36‑22 (MQ=255)
                     gTATTGGCTCCATGGtgtactgaccccaaaaagttg                <  1:537083‑M1/36‑22 (MQ=255)
                      tATTGGCTCCATGGtgtactgaccccaaaaagttgg               >  1:3520693‑M1/1‑14 (MQ=255)
                        tgcagtacaTGGTCGCCAGAAAGAAAATGCTCCAtt             <  2:3655038‑M1/27‑1 (MQ=255)
                         tGGCTCCATGGtgtactgaccccaaaaagttggaca            <  1:2715769‑M1/36‑26 (MQ=255)
                         gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa            <  2:2943619‑M1/28‑1 (MQ=255)
                         gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa            >  1:621987‑M1/9‑36 (MQ=255)
                         gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa            >  2:1628713‑M1/9‑36 (MQ=255)
                          cagtacaTGGTCGCCAGAAAGAAAATGCTCCATTaa           >  2:3609958‑M1/8‑36 (MQ=255)
                           gCTCCATGGtgtactgaccccaaaaagttggacagt          >  1:680187‑M1/1‑9 (MQ=255)
                           agtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAg          >  2:3630190‑M1/7‑36 (MQ=255)
                            gtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAgg         <  1:719203‑M1/31‑1 (MQ=255)
                             tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc        <  2:1410200‑M1/32‑1 (MQ=255)
                             tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc        <  1:2460269‑M1/32‑1 (MQ=255)
                             tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc        <  2:2350797‑M1/32‑1 (MQ=255)
                              ccATGGtgtactgaccccaaaaagttggatagttaa       >  2:2705250‑M1/1‑6 (MQ=255)
                              acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca       <  2:2445620‑M1/33‑1 (MQ=255)
                              acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca       <  1:477‑M1/33‑1 (MQ=255)
                              acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca       >  2:3471468‑M1/4‑36 (MQ=255)
                               caTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcac      <  1:3223866‑M1/34‑1 (MQ=255)
                               caTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcac      >  1:2034114‑M1/3‑36 (MQ=255)
                               cATTGtgtactgaccccaaaaagttggacagttaaa      >  2:163296‑M1/1‑5 (MQ=255)
                               accggtgtactgaccccaaaaagttggacagttaaa      <  1:3344581‑M1/33‑32 (MQ=255)
                                ccggtgtactgaccccaaaaagttggacagttaaac     >  2:3056113‑M1/3‑4 (MQ=255)
                                aTGGtgtactgaccccaaaaagttggacagttaaac     <  1:1745304‑M1/36‑33 (MQ=255)
                                aTGGtgtactgaccccaaaaagttggacagttaaac     <  1:478875‑M1/36‑33 (MQ=255)
                                aTGGtgtactgaccccaaaaagttggacagttaaac     >  2:2595908‑M1/1‑4 (MQ=255)
                                aTGGTCGCCAGAAAGAAACTGCCCCATTACGGcaca     >  1:1698422/1‑36 (MQ=25)
                                aTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcaca     >  2:1677839‑M1/2‑36 (MQ=255)
                                 tGGtgtactgaccccaaaaagttggacagttaaaca    <  2:1788823‑M1/36‑34 (MQ=255)
                                 tGGTCGTCAGAAAGAAAATGCTCCATTAAGGCACaa    <  2:3349002/36‑1 (MQ=255)
                                 tGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACaa    <  2:372550/36‑1 (MQ=255)
                                 tGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACaa    >  1:2010298/1‑36 (MQ=255)
                                 cggtgtactgaccccaaaaagttggacagttaaaca    <  1:828944‑M1/35‑34 (MQ=255)
                                  ggtgtactgaccccaaaaagttggacagttaaacac   >  2:685268‑M1/1‑2 (MQ=255)
                                  ggtgtactaaccccaaaaagttggacagttaaacac   <  1:2909498‑M1/36‑35 (MQ=255)
                                  ggTCGCCAGAAAGAAAATGCTCCATTAAGGCACAAt   >  1:3642424/1‑36 (MQ=255)
                                   gtgtagtgaccccaaaaagttggacagttaaacacg  <  1:2805898‑M1/36‑36 (MQ=255)
                                   gtgtactgacgccaaaaagttggacagttaaacacg  <  1:1466661‑M1/36‑36 (MQ=255)
                                   gtgtactgaccccaaaaagttggacagttaaacacg  >  1:2537782‑M1/1‑1 (MQ=255)
                                   gtgtactgaccccaaaaagttggacagttaaacacg  <  2:744703‑M1/36‑36 (MQ=255)
                                   gtgtactcaccccaaaaagttggacagttaaacacg  >  2:781825‑M1/1‑1 (MQ=255)
                                   gTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATa  >  2:1736824/1‑36 (MQ=255)
                                   gTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATa  <  2:1084944/36‑1 (MQ=255)
                                   |                                   
TCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATA  >  REL606/1821492‑1821562

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG