New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664688 =NA (NA)35 (0.670) 24/66 0.8 100% noncoding (1/1443 nt) IS150 repeat region
?REL606 1270660 = 0 (0.000)intergenic (‑167/+238) ldrC/chaA toxic polypeptide, small/calcium/sodium:proton antiporter

TTTCATCGTCCAACAAAATGGGTGCAGTACA.................................  <  REL606/664718‑664688
.............................CACCGGATAATTCCGGCTTGGTGTGGATACTACTT  >  REL606/1270660‑1270692
                                                                
TTTCATCGTCCAACAAAATGGGTGCAGTACACCGGA                              >  2:2233220/1‑36 (MQ=1)
    ATCGTCCAACAAAATGGGTGCAGTACACCGGATAAT                          >  1:1225376/1‑36 (MQ=1)
    ATCGTCCAACAAAATGGGTGCAGTACACCGGATAAT                          <  1:3138862/36‑1 (MQ=1)
     TCGTCCAACAAAATGGGTGCAGTACACCGGGTAATT                         >  2:2871700/1‑36 (MQ=0)
      CGTCCAACAAAATGGGTGCAGTACACCGGATAATTC                        <  2:2642118/36‑1 (MQ=1)
       GTCCAACAAAATGGGTGCAGTACACCGGATAATTCC                       >  2:2030210/1‑36 (MQ=1)
       GTCCAACAAAATGGGTGCAGTACACCGGATAATTCC                       <  1:527493/36‑1 (MQ=1)
        TCCAACAAAATGGGTGCAGTACACCGGATAATTCCG                      >  2:3340688/1‑36 (MQ=1)
        TCCAACAAAATGGGTGCAGTACACCGGATAATTCCG                      <  1:2397933/36‑1 (MQ=1)
        TCCAACAAAATGGGTGCAGTACACCGGATAATTCCG                      <  1:333542/36‑1 (MQ=1)
          CAACAAAATGGGTGCAGTACACCGGATAATTCCGGC                    >  1:2717495/1‑36 (MQ=1)
           AACAAAATGGGTGCAGTACACCGGATAATTCCGGCT                   >  1:1864671/1‑36 (MQ=1)
            ACAAAATGGGTGCAGTACACCGGATAATTTCGGCTT                  >  1:737801/1‑36 (MQ=0)
              AAAATGGGTGCAGTACACCGGATAATTCCGGCTTGG                >  2:2618124/1‑36 (MQ=1)
               AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT               >  2:1289352/1‑36 (MQ=1)
               AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT               >  2:165659/1‑36 (MQ=1)
               AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT               <  1:344623/36‑1 (MQ=1)
               AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT               <  1:3433597/36‑1 (MQ=1)
               AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT               <  2:604768/36‑1 (MQ=1)
                AATGGGTGCAGTACACCGGATAATTCCGGCTTGGTG              >  1:915287/1‑36 (MQ=1)
                AATGGGTGCAGTACACCGGATAATTCCGGCTTGGTG              >  2:1031423/1‑36 (MQ=1)
                 ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTct             >  1:102094/1‑34 (MQ=1)
                 ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGT             <  1:231710/36‑1 (MQ=1)
                   GGGTGCGGTACACCGGATAATTCCGGCTTGGTGTGG           <  1:990305/36‑1 (MQ=0)
                   GGGTGCAGTACACCGGATGATTCCGGCTTGGTGTGG           <  1:1159401/36‑1 (MQ=0)
                    GGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGA          <  2:2784616/36‑1 (MQ=1)
                      TGCAGTACACCGGATAATTCCGGCTTGGTGTGGATA        >  2:577497/1‑36 (MQ=1)
                        CAGTACACCGGATAATTCCGGCTTGGTGTGGATttt      >  1:2926234/1‑33 (MQ=0)
                        CAGTACACCGGATAATTCCGGCTTGGTGTGGATAat      >  1:771532/1‑34 (MQ=1)
                        CAGTACACCGGATAATTCCGGCTTGGTGTGGATACT      >  2:1293637/1‑36 (MQ=1)
                        CAGTACACCGGATAATTCCGGCTTGGTGTGGATACT      <  1:2773503/36‑1 (MQ=1)
                         AGTACACCGGATAATTCCGGCTTGGTGTGGATACat     >  1:1828566/1‑34 (MQ=1)
                         AGTACACCGGATAATTCCGGCTTGGTGTGGATACTA     >  2:3543347/1‑36 (MQ=1)
                          GTACACCGGATAATTCCGGCTTGGTGTGGATAATAt    >  2:1683166/1‑35 (MQ=0)
                            ACACCGGATAATTCCGGCTTGGTGTGGATACTACTT  <  1:3267286/36‑1 (MQ=35)
                                                                
TTTCATCGTCCAACAAAATGGGTGCAGTACA.................................  <  REL606/664718‑664688
.............................CACCGGATAATTCCGGCTTGGTGTGGATACTACTT  >  REL606/1270660‑1270692

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG