Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp coding (573‑575/1041 nt) ynjI ← predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1821525 =1 (0.060)59 (1.140) 39/66 0.1 98.3% coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 18215270 (0.110)57 (1.070) 27/68 0.6 100% coding (573/1041 nt) ynjI predicted inner membrane protein
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

Only 100 of 117 total aligned reads displayed.

CTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAA  >  REL606/1821490‑1821560
                                   |                                   
tccatttcatcgtccaacaaaatgggtgccgtacat                                     <  1:1679255‑M1/1‑1 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacat                                     >  2:88995‑M1/36‑36 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacat                                     <  2:1633201‑M1/1‑1 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacat                                     <  1:190257‑M1/1‑1 (MQ=255)
cTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCAt                                     >  1:2400474/1‑36 (MQ=255)
 tttctccATGTTTGCTTTAAAGGTATTGGCCCCATg                                    <  1:2603722/33‑1 (MQ=37)
 ccatttcatcgtccaacaaaatgggtgcagtacaTg                                    <  1:122046‑M1/2‑1 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacaTg                                    >  1:1726018‑M1/35‑36 (MQ=255)
  tcctccATGTTTGCTTTAAAGGTATTGGCTCCATgg                                   <  2:1406913/36‑1 (MQ=255)
   cctccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                  >  1:2803284‑M1/1‑35 (MQ=255)
   cctccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                  >  1:1989677‑M1/1‑35 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaTGGt                                  <  1:2647767‑M1/4‑1 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaTGGt                                  <  1:2314910‑M1/4‑1 (MQ=255)
    tttcatcgtccaacaaactgggtgcagtacaTGGTc                                 <  1:699940‑M1/5‑1 (MQ=255)
    tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                 >  2:1737896‑M1/32‑36 (MQ=255)
    tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                 >  2:2106404‑M1/32‑36 (MQ=255)
    ctccATGTTTGCTTTGAAGGTATTGGCTCCATGGtg                                 <  1:513012‑M1/36‑3 (MQ=255)
    ctccATGTTTGCTTTAAAGGTATTGGCTCCACGGtg                                 >  1:2044674‑M1/1‑34 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                <  2:156332‑M1/6‑1 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                <  2:3235400‑M1/6‑1 (MQ=255)
      tcatcgtccaacaaaatgggtgcagtacaTGgtcac                               <  1:2925509‑M1/7‑3 (MQ=255)
      ccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtg                               <  2:1633966‑M1/36‑5 (MQ=255)
       catcgtccaacaaaatgggtgcagtacaTGGTCGcc                              >  1:231739‑M1/29‑36 (MQ=255)
       cATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtag                              >  2:3153073‑M1/1‑31 (MQ=255)
       cATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtac                              >  2:2272166‑M1/1‑31 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaTGGTCGCCa                             <  2:1560518‑M1/9‑1 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaTGGTCGCCa                             >  2:1940185‑M1/28‑36 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaTGGTCGCCa                             <  2:3554424‑M1/9‑1 (MQ=255)
         tcgtccaacaaaatgggtgcagtacaTGGTCGCCag                            >  1:2388242‑M1/27‑36 (MQ=255)
          gTTTGCTTTAAAGGTATTGGCTCCATGGtgtactga                           <  1:1699419‑M1/36‑9 (MQ=255)
          cgtccaacaaaatgggtgcagtacaTGGTCGCCaga                           >  2:747815‑M1/26‑36 (MQ=255)
           tttGCTTTAAAGGTATTGGCTCCATGGtgtactgtc                          >  1:532498‑M1/1‑27 (MQ=255)
           tttGCTTTAAAGGTATTGGCTCCATGGtgtactgac                          <  1:1482684‑M1/36‑10 (MQ=255)
           tttGCTATAAAGGTATTGGCTCCATGGtgtactgac                          <  1:1853033‑M1/36‑10 (MQ=255)
           gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                          >  1:3157173‑M1/25‑36 (MQ=255)
            ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                         >  1:2061092‑M1/1‑26 (MQ=255)
            ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                         <  1:1517462‑M1/36‑11 (MQ=255)
            ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                         >  2:2594364‑M1/1‑26 (MQ=255)
            ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                         <  1:224650‑M1/36‑11 (MQ=255)
            ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                         <  1:2590613‑M1/36‑11 (MQ=255)
             ccaacaaaatgggtgcagtacaTGGTCGCCagaaag                        <  2:672536‑M1/14‑1 (MQ=255)
              caacaaaatgggtgcagtacaTGGTCGCCagaaaga                       >  2:3439104‑M1/22‑36 (MQ=255)
               aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                      >  2:454845‑M1/21‑36 (MQ=255)
               aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                      <  1:1771366‑M1/16‑1 (MQ=255)
                 ttATAGGTATTGGCTCCATGGtgtactgaccccaaa                    <  2:1135572‑M1/36‑16 (MQ=255)
                 ttAAAGATATTGGCTCCATGGtgtactgaccccaaa                    <  2:2416511‑M1/36‑16 (MQ=255)
                 caaaatgggtgcagtacaTGGTCGCCAGAAAGaaaa                    <  1:943853‑M1/18‑1 (MQ=255)
                 caaaatgggtgcagtacaTGGTCGCCAGAAAGaaaa                    <  2:1698915‑M1/18‑1 (MQ=255)
                  tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                   >  2:1145078‑M1/1‑20 (MQ=255)
                  tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                   >  1:3192482‑M1/1‑20 (MQ=255)
                  aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                   >  2:862896‑M1/18‑36 (MQ=255)
                  aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                   >  2:3461338‑M1/18‑36 (MQ=255)
                  aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                   <  2:3255749‑M1/19‑1 (MQ=255)
                   aaatgggtgcagtacaTGGTCGCCAGAAAGAAAATg                  >  2:1265558‑M1/17‑36 (MQ=255)
                   aaatgggtgcagtacaTGGTCGCCAGAAAGAAAATg                  <  2:3367653‑M1/20‑1 (MQ=255)
                   aaaGGTATTGGCTCCATGGtgtactgaccccataaa                  >  2:34333‑M1/1‑19 (MQ=255)
                   aaaGGTATTGGCTCCATGGtgtactgaccccaaaaa                  >  2:2139593‑M1/1‑19 (MQ=255)
                    aatgggtgcagtacaTGGTCGCCAGAAAGAAAATGc                 <  1:1153850‑M1/21‑1 (MQ=255)
                    aaGGTATTGGCTCCATGGcgtactgaccccaaaaag                 >  2:2441211‑M1/1‑18 (MQ=255)
                     atgggtgcagtacaTGGTCGCCAGAAAGAAAATGCt                >  1:1068183‑M1/15‑36 (MQ=255)
                     atgggtgcagtacaTGGTCGCCAGAAAGAAAATGCt                <  1:3381572‑M1/22‑1 (MQ=255)
                     aGGTATTGGCTCCATGGtgtactgaccccaaaaagt                >  1:3501010‑M1/1‑17 (MQ=255)
                      tgggtgcagtacaTGGTCGCCAGAAAGAAAATGCTc               <  2:2303540‑M1/23‑1 (MQ=255)
                      ggTATTGGCTCCATGGtgtactgaccccaaaaagtt               >  1:1143090‑M1/1‑16 (MQ=255)
                       gggtgcagtacaTGGTCGCCAGAAAGAAAATGCTcc              <  1:1211114‑M1/24‑1 (MQ=255)
                       gggtgcagtacaTGGTCGCCAGAAAGAAAATGCTcc              >  1:3085215‑M1/13‑36 (MQ=255)
                       gTATTGGCTCCATGGtgtactgaccccaaaaagttg              <  1:537083‑M1/36‑22 (MQ=255)
                       gTATTGGCTCCATGGtgtactgaccccaaaaagttg              >  2:1912223‑M1/1‑15 (MQ=255)
                       gTATTGGCTCCATGGtgtactgaccccaaaaagttg              <  2:3571166‑M1/36‑22 (MQ=255)
                       gTATTGGCTCCATGGtgtactgaccccaaaaagttg              <  1:1596581‑M1/36‑22 (MQ=255)
                        tATTGGCTCCATGGtgtactgaccccaaaaagttgg             >  1:3520693‑M1/1‑14 (MQ=255)
                          ttGGCTCCATGGtgtactgaccccaaaaagttggac           <  1:3589120‑M1/36‑25 (MQ=255)
                          tgcagtacaTGGTCGCCAGAAAGAAAATGCTCCAtt           <  2:3655038‑M1/27‑1 (MQ=255)
                           gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa          >  1:621987‑M1/9‑36 (MQ=255)
                           gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa          <  2:2943619‑M1/28‑1 (MQ=255)
                           gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa          >  2:1628713‑M1/9‑36 (MQ=255)
                            cagtacaTGGTCGCCAGAAAGAAAATGCTCCATTaa         >  2:3609958‑M1/8‑36 (MQ=255)
                             gCTCCATGGtgtactgaccccaaaaagttggacagt        >  1:680187‑M1/1‑9 (MQ=255)
                             agtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAg        >  2:3630190‑M1/7‑36 (MQ=255)
                               tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc      <  2:1410200‑M1/32‑1 (MQ=255)
                               tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc      <  1:2460269‑M1/32‑1 (MQ=255)
                                ccATGGtgtactgaccccaaaaagttggatagttaa     >  2:2705250‑M1/1‑6 (MQ=255)
                                ccATGGtgtactgaccccaaaaagttggacagttaa     <  2:1024280‑M1/36‑31 (MQ=255)
                                ccATGGtgtactgaccccaaaaagttggacagttaa     >  2:157284‑M1/1‑6 (MQ=255)
                                acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca     <  1:477‑M1/33‑1 (MQ=255)
                                acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca     <  2:384198‑M1/33‑1 (MQ=255)
                                acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca     <  2:2445620‑M1/33‑1 (MQ=255)
                                acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca     >  2:3471468‑M1/4‑36 (MQ=255)
                                 caTGGTCGCCAGAAAGAAAATGCTCCATTTAGGcac    <  2:696462‑M1/34‑1 (MQ=255)
                                 caTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcac    >  1:2034114‑M1/3‑36 (MQ=255)
                                 caTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcac    <  1:3223866‑M1/34‑1 (MQ=255)
                                  aTGGtgtactgaccccaaaaagttggacagttaaac   <  1:1293603‑M1/36‑33 (MQ=255)
                                  aTGGtgtactgaccccaaaaagttggacagttaaac   <  1:478875‑M1/36‑33 (MQ=255)
                                  aTGGtgtactgaccccaaaaagttggacagttaaac   <  1:1745304‑M1/36‑33 (MQ=255)
                                  aTGGtgtactgaccccaaaaagttggacagttaaac   >  2:2595908‑M1/1‑4 (MQ=255)
                                  aTGGTCGCCAGAAAGAAACTGCCCCATTACGGcaca   >  1:1698422/1‑36 (MQ=25)
                                  aTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcaca   >  2:1677839‑M1/2‑36 (MQ=255)
                                   tGGtgtactgaccccaaaaagttggacagttaaaca  <  2:1788823‑M1/36‑34 (MQ=255)
                                   tGGTCGTCAGAAAGAAAATGCTCCATTAAGGCACaa  <  2:3349002/36‑1 (MQ=255)
                                   tGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACaa  <  2:372550/36‑1 (MQ=255)
                                   |                                   
CTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAA  >  REL606/1821490‑1821560

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG