Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,424,8820G→T29.2% 23.949intergenic (+100/‑26)nirD/nirCnitrite reductase small subunit/nitrite transporter
Reads supporting (aligned to +/- strand):  new base (0/14):  ref base (8/26):  total (8/41)

ACATTTTTTAAACTTTTTG.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACA  >  REL606/3424852‑3424916
                                 |                                  
tttttttttTATGTTTTTG.TTT.TTCT.TTTTTttttt                               <  2:2870420/33‑1 (MQ=9)
ttcttttttACTTTTTTTG.TTT.TTTT.TTTTTttttt                               <  1:3016463/33‑1 (MQ=2)
ttaTTTTTTCTTCTTTTTT.TTT.TTTT.TGTTTttttt                               <  2:3281751/34‑1 (MQ=0)
tctttttttTTACTTTATT.TTT.TGTT.TTTTTttttt                               <  2:3366227/33‑1 (MQ=12)
aCATTTTTTAAACTTTTTG.TTT.TATT.TTTTGttttt                               >  1:3573144/1‑36 (MQ=255)
 ttttttttATTTTTTTTG.TTT.TTTTGTTTTGttttt                               <  2:3468814/34‑1 (MQ=0)
 tcttttttTCATTTTTTG.TTT.TTTT.TTTTTtttttt                              <  1:3543043/34‑2 (MQ=2)
 cATTTTTTAAACTTTTTG.TTT.TATT.TTTTGTTTTTa                              <  2:61866/36‑1 (MQ=255)
 aaTTTTTTTTTCTTTTTT.TCT.TTTT.TTTTGttattt                              <  2:3553285/35‑2 (MQ=2)
  tttttttAATTTTTGGG.TTT.TATT.TTGTTTTCTTAt                             <  2:2709673/35‑1 (MQ=0)
  gttttttATTTTTTTTG.TTT.TTTT.ATTTTttttttt                             <  2:3734748/35‑3 (MQ=0)
  gttttttATTCTTTATT.TTT.TTTT.TTTTTttttttt                             <  2:3671910/35‑3 (MQ=2)
  cttttttTTACTTTTTT.TTT.TGTT.TTTTTctttttt                             <  2:2781403/35‑3 (MQ=2)
  cttttttATTTTTTCTT.TTT.TTTT.TTTTGttttttt                             <  2:3644893/35‑3 (MQ=9)
  cttttttATTCTTTTTG.TTT.TCTT.TTTTTttttttt                             <  1:3198821/35‑3 (MQ=12)
   ttttttTATTTTTTTG.TTTGTTTT.TTTTGttttttt                             <  2:3742731/36‑3 (MQ=0)
   ttttttATTTTTTTTT.TTT.TGTT.TTTTTttttttgg                            <  2:2901300/36‑4 (MQ=2)
    tttttATATCTTTTT.TTT.TATT.TTTTTTTTTTTttt                           <  1:3112836/36‑1 (MQ=9)
    tttttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAttt                           <  1:2516067/36‑1 (MQ=255)
    tttttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAttt                           >  2:807886/1‑36 (MQ=255)
     ttttATGCTTTTTT.TTT.TGTT.TTTTCTTTTCTtttt                          <  2:2751020/36‑1 (MQ=0)
     ttttATATTTTTTT.TGT.TATT.TTATTTTTTTTtttt                          <  2:3281590/36‑1 (MQ=2)
     ttttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAtttt                          <  2:3006371/36‑1 (MQ=255)
     ttttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAtttt                          <  1:1804578/36‑1 (MQ=255)
       ttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAtttttt                        <  2:829907/36‑1 (MQ=255)
         aaaCTTTTTG.TTT.TATT.TTTTGTTTTTATTTTTTaa                      <  2:3298524/36‑1 (MQ=255)
         aaaCTTTTTG.TTT.TATT.TTTTGTTTTTATTTTTTaa                      <  2:3640737/36‑1 (MQ=255)
          taCTGTTTGTTTT.TATT.TTTTTTTATTTtttttttt                      <  2:3385489/35‑3 (MQ=0)
          aaCTTTTTG.TTT.TATT.ATTTGTTTTTATTTTTTaaa                     <  1:2694106/36‑1 (MQ=255)
           aCTTTTTCTTTT.TTTT.TTTTGTTTTTTttttttttt                     <  2:3289803/36‑4 (MQ=2)
              ttttG.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGAt                 <  1:3642548/36‑1 (MQ=255)
                ttG.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGATaa               <  2:647030/36‑1 (MQ=255)
                  g.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGATAATc             >  1:2941456/1‑36 (MQ=255)
                    ttt.tATT.TTTTGTTTTTATTTTTTAAAGGATAATCa            <  1:555793/36‑1 (MQ=255)
                    ttt.tATT.TTTTGTTTTTATTTTTTAAAGGATAATCa            <  1:24868/36‑1 (MQ=255)
                        tATT.TTTTGTTTTTATTTTTTAAAGGATAATCAAAt         <  2:1476218/36‑1 (MQ=255)
                        tATT.TTTTGTTTTTATTTTTTAAAGGATAATCAAAt         <  2:1463277/36‑1 (MQ=255)
                         aTT.TTTTGTTTTTATTTTTTAAAGGATAATCAAATg        >  2:1962436/1‑36 (MQ=255)
                         aTT.TATTGTACTTATTATTAAAAGGATAATCAAAtt        <  1:1465929/36‑2 (MQ=12)
                          tt.ttttGTTTTTATTTTTTAAAGGATAATCAAATGt       <  2:2962615/36‑1 (MQ=255)
                          tt.ttttGTTTTTATTTTTTAAAGGATAATCAAATGt       <  1:2190698/36‑1 (MQ=255)
                           t.ttttGTTTTTATTTTTTAAAGGATAATCAAATGtt      <  2:1535177/36‑1 (MQ=255)
                           t.ttttGTTTTTATTTTTTAAAGGATAATCAAATGtt      <  1:786837/36‑1 (MQ=255)
                           t.ttttGTTTTTATTTTTTAAAGGATAATCAAATGtt      >  1:2533382/1‑36 (MQ=255)
                             ttttGTTGTTATTTTTTGAAGGAGCATCAAATGttt     <  2:968949/36‑1 (MQ=19)
                             ttttGGTTTTATTTTTTAAAGGATAATCAAATGttt     <  2:3688956/36‑1 (MQ=255)
                              tttGTTTTTATTTTTTAATGGATAATCAAATGTTTa    >  2:577043/1‑36 (MQ=255)
                               ttGTTTTTATTTTTTAAAGGATAATCAAATATTTAc   >  2:1621419/1‑36 (MQ=255)
                                tGTTTTTATTTTTTAAAGGATAATCAAATGTTTACa  >  1:807100/1‑36 (MQ=255)
                                 |                                  
ACATTTTTTAAACTTTTTG.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACA  >  REL606/3424852‑3424916

Base quality scores:  ATCG  < 3 ≤  ATCG  < 5 ≤  ATCG  < 11 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG