New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2429311 =33 (0.780)4 (0.090) 3/54 5.5 11.0% coding (206/243 nt) yfdY predicted inner membrane protein
?REL606 = 2792989 32 (0.580)coding (481/849 nt) ECB_02621 conserved hypothetical protein
Rejected: Position hash score below cutoff.

TCGCCTGCCATACCCCACCATAAAGCGAATCATCAAGCCACAAGCCGGGGCAAGAAACATAAATATCCCC  >  REL606/2429277‑2429346
                                  |                                   
tCGCCTGCCATACCCCACCATAAAGCGAATCATCaa                                    >  2:1506181/1‑36 (MQ=255)
cccccTGCCATACCCCACCATAAAGCGAATCATCaa                                    <  1:727205/33‑1 (MQ=255)
 cGCCTGCCATACCCCACCATAAAGCGAATCATCAAg                                   >  2:2880322/1‑36 (MQ=255)
 cGCCTGCCATACCCCACCATAAAGCGAATCATAAAg                                   >  1:2628914/1‑36 (MQ=255)
  gCCTGCCATACCCCACCATAAAGCGAATCATCAAGc                                  >  1:3317946/1‑36 (MQ=255)
   ccTGCCATACCCCACCATAAAGCGAATCATCAAGcc                                 >  2:1342071/1‑36 (MQ=255)
   ccTGCCATACCCCACCATAAAGCGAATCATCAAGcc                                 >  1:98112/1‑36 (MQ=255)
    cTGCCATACCTCACCATAAAGCGAATCATCAAGCca                                <  1:553017/36‑1 (MQ=255)
    cTGCCATACCCCACCATAAAGCGAATCATCAAGCca                                >  2:1943383/1‑36 (MQ=255)
     tGCCATACCCCACCATAAAGCGAATCATCAAGCcac                               >  2:1773049/1‑36 (MQ=255)
     tGCCATACCCCACCATAAAGCGAATCATCAAGCcac                               >  2:1591136/1‑36 (MQ=255)
      gCCATACCCCACCATAAAGCGAATCATCAAGCcaca                              >  1:187022/1‑36 (MQ=255)
       ccATACCCCACCAAAAAGCAAATCAACAAGCCACaa                             <  2:2603655/36‑1 (MQ=25)
       ccATACCCCACAAAAAAGCAAATCATCAAGCCACaa                             <  2:3362110/36‑1 (MQ=25)
         aTACCCCACCATAAAGCGAATCATCAAGCCACAAGc                           >  1:453078/1‑36 (MQ=255)
          tACCCCACCATAAAGCGACTCATCAAGCCACAAGcc                          >  1:2307708/1‑36 (MQ=255)
          tACCCCACCATAAAGCGAATCATCAAGCCACAAGcc                          >  1:3533162/1‑36 (MQ=255)
            ccccACCAAAAAGCAAATCATCAAGCCACAAGCCgg                        <  1:1114380/36‑1 (MQ=38)
              ccaccaAAAAGCGAATAATCAAGGCACAAGCCgggg                      <  1:2966477/36‑1 (MQ=37)
              ccacaaAAAAGCGAATCAAAAAGCCACAAGCCgggg                      <  2:561210/36‑1 (MQ=16)
               ccccaTAAAGCAAATCATAAAGCCACAAGCCGGGGc                     <  2:189897/34‑1 (MQ=25)
               caccaTAAAGCGAATCATCAAGCCACAAGCCGGGGc                     >  2:2305488/1‑36 (MQ=255)
                  caTAAAGCGAATCCTCAAGCCACAAGCCGGGGCacg                  >  1:2203317/1‑34 (MQ=38)
                   aTAAAGCGAATCATCAAGCCACAAGCCGGGGCAAGa                 >  1:1445676/1‑36 (MQ=255)
                    tAAAGCGAATCATCAAGCCACAAGCCGGGGCAAGaa                >  2:2583034/1‑36 (MQ=255)
                     aaaGCGAATCATCAAGCCACAAGCCGGGGCAAGaaa               >  2:3672090/1‑36 (MQ=255)
                     aaaGAGAATAAAAAAGCCACAAGCCGGGGCAAGaaa               <  1:1507483/36‑1 (MQ=16)
                         cGAATCATCAAGCCACAAGCCGGGGCAAGAAACATa           >  2:1443145/1‑36 (MQ=255)
                          gAATCATCAAGCCACAAGCCGGGGCAAGAAACATaa          >  2:1533332/1‑36 (MQ=255)
                           aaTCATCAAGCCACAAGCCGGGGCAAGAAACATaaa         >  1:1404810/1‑36 (MQ=255)
                             tcatcaAGCCACAAGCCGGGGCAAGAAACATAAata       >  1:196520/1‑36 (MQ=255)
                                tcaAGCCACAAGCCGGGGCAAGAAACATAAATATcc    >  1:2227722/1‑36 (MQ=255)
                                acaAGCCACAAGCCGGGGCAAGAAACATAAATATcc    <  1:1694687/35‑1 (MQ=255)
                                  aaGCCACAAGCCGGGGCAAGAAACATAAATATcctc  >  1:1179809/1‑34 (MQ=255)
                                  aaGCCACAAGCCGGGGCAAGAAACATAAATATcccc  >  1:3490250/1‑36 (MQ=255)
                                  |                                   
TCGCCTGCCATACCCCACCATAAAGCGAATCATCAAGCCACAAGCCGGGGCAAGAAACATAAATATCCCC  >  REL606/2429277‑2429346

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 18 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG