New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2429311 =33 (0.780)4 (0.090) 3/54 5.5 11.0% coding (206/243 nt) yfdY predicted inner membrane protein
?REL606 = 2792989 32 (0.580)coding (481/849 nt) ECB_02621 conserved hypothetical protein
Rejected: Position hash score below cutoff.

CTGGCGCGGGGAACACATATATCAGAGCAAAAAAC.AAAGCCACAGCCACGGTTTATCCCCGCTGGCGCGGG  >  REL606/2792954‑2793024
                                    |                                   
cTGGCGCGGGGAACACATATATCAGAGCAAAAAAC.a                                     >  2:2142485/1‑36 (MQ=255)
   gcgcGGGGAACACATATATCAGAGCAAAAAAC.AAag                                  <  2:3670667/36‑1 (MQ=255)
    cgcgGGGAACACATATATCAGAGCAAAAAAC.AAagc                                 >  1:3100266/1‑36 (MQ=255)
      cgGGGAACACATATATCAGAGCAAAAAAC.AAagcta                               >  1:532075/1‑34 (MQ=255)
      cgGGGAACACATATATCAGAGCAAAAAAC.AAagcca                               >  2:2534268/1‑36 (MQ=255)
       ggggAACACATATATCAGAGCAAAAAAC.AAagccac                              >  2:2570759/1‑36 (MQ=255)
       ggggAACACATATATCAGAGCAAAAAAC.AAagccac                              >  2:3221800/1‑36 (MQ=255)
        gggAACACATATATCAGAGCAAAAAAC.AAagccaca                             >  2:2697091/1‑36 (MQ=255)
         ggAACACATATATCAGAGCAAAAAAC.AAagccacag                            <  1:693581/36‑1 (MQ=255)
             cacaTATATCAGAGCAAAAAAC.AAagccacagccac                        >  2:1902332/1‑36 (MQ=255)
              acaTATATCAGAGCAAAAAAC.AAAGCCACAGCCACg                       >  1:1179008/1‑36 (MQ=255)
              acaTATATCAGAGCAAAAAAC.AAAGCCACAGCCACg                       >  1:104868/1‑36 (MQ=255)
               caTATATCAGAGCAAAAAAC.AAAGCCACAGCCACgg                      >  2:185199/1‑36 (MQ=255)
                atatatCAGAGCAAAACAC.AAAGCCACAGCCACGGt                     >  1:1173506/1‑36 (MQ=255)
                atatatCAGAGCAAAAAAC.AAAGCCACAGCCACGGt                     >  1:3672372/1‑36 (MQ=255)
                atatatCAGAGCAAAAAAC.AAAGCCACAGCCACGGt                     >  2:2391780/1‑36 (MQ=255)
                atatatCAGAGCAAAAAAC.AAAGCCACAGCCACGGt                     >  1:1169691/1‑36 (MQ=255)
                 tatatCAGAGCAAAAAAC.AAAGCCACAGCCACGGtt                    >  1:172504/1‑36 (MQ=255)
                   tatCAGAGCAAAAAAC.AAAGCCACAGCCACGGATTa                  >  1:3293279/1‑36 (MQ=255)
                     tCAGAGCAAAAAAC.AAAGTCACAGCCACGGTTTATc                >  2:837123/1‑36 (MQ=255)
                      cAGAGCAAAAAAC.AAAGCCACAGCCACGGTTTATcc               >  2:1807961/1‑36 (MQ=255)
                         agCAAAAAAC.AAAGCCACAGCCACGGTTTATCCCCg            >  2:2330493/1‑36 (MQ=255)
                          gCAAAAAAC.AAAGCCACAGCCACGGTTTATCCCCGc           >  2:855045/1‑36 (MQ=255)
                           aaaaaaaC.AAAGCCCCAGCCACGGTTTATCCCCGCt          <  2:3300255/35‑1 (MQ=255)
                            aaaaaaCAAAACCCCCAGCCACGGTTTATCCCCGCt          <  2:2641547/36‑1 (MQ=16)
                            aaaaaaC.AAAGCCACAGCCACGGTTTATCCCCGccg         >  1:2087972/1‑34 (MQ=255)
                            aaaaaaC.AAAGCCACACCCACCGACTACCCCCCCTg         >  1:3406865/1‑36 (MQ=9)
                              aaaaC.AAAGCCACAGCCACGGTTTATCCCCGCTGgc       >  1:164111/1‑36 (MQ=255)
                               aaaC.AAAGCCACAGCCACGGTTTATCCCCGCTgggg      >  1:2338957/1‑34 (MQ=255)
                               aaaC.AAACCCACAGCCACGGTTTATCCCCGCTGgcg      <  1:3169722/36‑1 (MQ=255)
                                aaC.AAAGCCACAGCCACGGTTTATCCCCGCTGgcgc     >  1:813765/1‑36 (MQ=255)
                                 aC.AAAGCCACAGCCACGGTTTATCCCCACTGGcgcg    >  2:404929/1‑36 (MQ=255)
                                 aC.AAACCCCCAGCCACGGTTTATCCCCGCTGGcgcg    <  2:3039997/36‑1 (MQ=18)
                                    aaaGCCACAGCCACGGTTTATCCCCGCTGGCGCggg  >  1:2407103/1‑36 (MQ=255)
                                    aaaGCCACAGCCACGGTTTAACCCCCCTGGCGCggg  >  1:268298/1‑36 (MQ=25)
                                    aaaCCCGCAGGCGCGGTTTATCCCCGCTGGCGCggg  <  1:402394/36‑1 (MQ=0)
                                    |                                   
CTGGCGCGGGGAACACATATATCAGAGCAAAAAAC.AAAGCCACAGCCACGGTTTATCCCCGCTGGCGCGGG  >  REL606/2792954‑2793024

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 32 ≤  ATCG