Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6064,463,0160A→T49.1% 144.4116254yjgNconserved inner membrane protein
Reads supporting (aligned to +/- strand):  new base (1/53):  ref base (25/31):  total (26/90)

Only 100 of 118 total aligned reads displayed.

TGTTTTTTTTAGTTGTCTTGT.TT.TTGTTTTTTTCTATTTCGCAATATTAATGACAGTGTCAGCAGATATGC  >  REL606/4462981‑4463051
                                     |                                   
tGTTTTGTTTTGTT.TTTTGT.TT.TT.TTTTTTTCTTtt                                   <  2:3634458/36‑1 (MQ=16)
 tttttttttTGTTGT.TT.T.TT.GTGTTTTTTTTTTttt                                  <  2:2959544/35‑1 (MQ=2)
 tttttttctCGTT.TCTTCT.TT.TT.TTTTTTTCTTttt                                  <  1:3479325/35‑1 (MQ=0)
 gTTTTTTTTAGTTGTCTTGT.TT.TTGTTTTTTTCTAt                                    <  2:2498419/36‑1 (MQ=255)
  ttttttttTTTTTTCTTTA.AT.TTGTTTTTTTCTTtt                                   <  2:3562546/36‑1 (MQ=2)
  ttttttttTTTTGT.TTGT.TT.TT.TTTTTTTCTCtttt                                 <  2:2831095/36‑2 (MQ=2)
  ttttttttTGTTG.CTTTT.TG.TTTTTTTTTCCTGttt                                  <  1:3497517/36‑1 (MQ=2)
  ttttttttGTTTGT.TTGT.TT.TT.TTTTTTTCTTtttt                                 <  2:2730337/36‑2 (MQ=0)
  ttttttttCGTT.TTTTGT.TC.TTTTTTTTTTCTTttt                                  <  2:3580670/36‑1 (MQ=2)
  ttttttttA.TGATCTTGT.TT.GTTTTTTTTTTTTttt                                  <  2:3590181/36‑1 (MQ=0)
  ttttgtttTGTT.TCTTGT.TT.TTTTTTTGTTTTTttt                                  <  2:3272149/36‑1 (MQ=2)
  tttgttttAGTT.TGTTGT.TT.TTTTTTTTTTTTTttt                                  <  2:3705812/36‑1 (MQ=2)
  tgttttttTTTTGTCTT.T.TT.TT.TTTTTTTCTTTTTc                                 <  2:3010261/34‑1 (MQ=0)
  tgttttttTTTTGT.TTCT.TT.TTTTTTTTTTCTTttt                                  <  2:2950219/34‑1 (MQ=2)
  gcttttttTGTT.TTTTGT.TT.TTTTTTTTTTTTTttt                                  <  2:3328129/34‑1 (MQ=0)
  ctttttttTTTTGT.TTAT.TT.TTGTTTTTTTTTTttt                                  <  2:2738074/35‑1 (MQ=0)
   tttttttTTTTG.CTTTT.TT.TTTTTTTTTTCTAtttt                                 <  2:3233796/36‑2 (MQ=2)
   tttttttTGTTTTGTTTG.TT.TTGTTTTTTTTTTttt                                  <  2:3268381/36‑1 (MQ=0)
   tttttttGTTTATTTTGT.TT.TTGTTTTTTTTTTttt                                  <  2:2730322/36‑1 (MQ=9)
   tttttttCTTTTTCTCTT.TT.TTTTTTTTTTCTTttt                                  <  2:3608443/36‑1 (MQ=0)
   tttttttAGTTGTCTTGT.TT.TTGTTTTTTTTTAttt                                  >  2:3395849/1‑36 (MQ=255)
   tttttttAGTTGTCTTGT.TT.TTGTTTTTTTCTAttt                                  >  2:840184/1‑36 (MQ=255)
   tttatttGGTTTTTTTGT.TT.TTTTTTTTTTTTTttt                                  <  1:3479249/36‑1 (MQ=2)
   tgtttttTGTTGTTTTTT.TT.TTGTTTTTTTTTTttt                                  <  1:3570334/34‑1 (MQ=2)
   tggttttTGTTGTTTTGT.TT.TTTTTTTTTTTTTttt                                  <  2:3366436/33‑1 (MQ=0)
   gttttttTTTTGTTGTTT.TT.TTGTTTTTTTTTTttt                                  <  2:2719734/35‑1 (MQ=0)
   gttttttTGTGCTTTTGT.TT.TTTTTTTTTTTTTttt                                  <  2:2709220/35‑1 (MQ=12)
   gttttttGTTTTTGTTGT.TT.TTTTTTTTTTTTTttt                                  <  2:3233770/35‑1 (MQ=0)
   gttttttGGTTTTTTTTT.TT.TTGTTTTTTTTTTttt                                  <  2:3589004/35‑1 (MQ=2)
   gttttttCTTTTTGTTGT.TT.TT.TTTTTTTCTCtttt                                 <  2:3233853/35‑2 (MQ=2)
   gttttctAGTTG..TTGT.TT.TTGTTTTTTTTTTttttt                                <  2:3185326/35‑3 (MQ=2)
   cttttttTTTTTTTTTGT.TT.TTTTTTTGTTCTTttt                                  <  2:3375967/35‑1 (MQ=2)
   cttttttTGTTTTTTTTT.TT.TTGTTTTTTT.TAtttt                                 <  2:3590183/35‑2 (MQ=0)
    ttttttTGTTTTGTGTT.TT.TTGTTTTTTTTTTtttt                                 <  2:3442072/36‑2 (MQ=0)
    ttttttTGTCTTTTTGT.TG.TTTTTTTTTTTTAtttt                                 <  2:3442224/36‑2 (MQ=2)
    ttttttTCTTGTCTT.T.TT.TTGTTTTTTTTTTttttt                                <  2:3059264/36‑3 (MQ=0)
    ttttttGTTTGTGTTGT.TT.TTTTTTTTTTTTGtttt                                 <  2:3156306/36‑2 (MQ=9)
    ttttttGGTTTTTTTGT.TT.TTCTTTTTTTTTTtttt                                 <  2:3290965/36‑2 (MQ=2)
    ttttttATTTTTATTGTGTT.TTTTTTTTTTCTCttt                                  <  2:3376025/36‑1 (MQ=2)
    ttttttAGTGCTTTTGT.TT.TTATTTATTTATTtttt                                 <  2:2821279/36‑2 (MQ=0)
    tttttcTGTTGTTTTGT.TT.TTTTGTTTTTTTTtttt                                 <  2:2841173/36‑2 (MQ=2)
    tttttcTGTAGTTTTGT.TT.TTTTTTTTTTTTTtttt                                 <  2:3544286/36‑2 (MQ=0)
    ttttatATTTTTTTTGT.TT.TTTGTTTTTTTTAtttt                                 <  2:3194733/36‑2 (MQ=0)
    tttgttTGTTTTCTTGT.GT.TTGTTTTTTTTTTtttt                                 <  2:3743520/36‑2 (MQ=2)
    ttgtttAG.TGTGTTGT.TTGTTGTTTTTTTTTTTTTc                                 <  2:3752070/33‑1 (MQ=0)
    gtttttTGTT.TCGTGT.TT.TTTTTTTTTTTTTttttt                                <  2:3580865/35‑3 (MQ=2)
    gtttttCGTTTTTTTTT.TT.TTGTTTTTTTTTTtttt                                 <  2:2781206/35‑2 (MQ=2)
    gattttTGTTTTTTTGT.TT.TTTTTTTTTTTTTtttt                                 <  2:3717069/34‑2 (MQ=0)
     tttttTTTTGTTTTGT.TT.GTTTTTTTTTCTTttttt                                <  2:3717108/36‑3 (MQ=0)
     tttttTGTTTTCTT.T.TT.TGTTTTTTTTTTAtttttt                               <  2:3635151/36‑4 (MQ=12)
     tttttTGTTGTTTGTT.TT.TTGTGTTTTTGTTttttt                                <  2:2960704/36‑3 (MQ=2)
     tttttTCTTGTCTTTT.TG.TTTTTTTTTTTTTttttt                                <  2:2940924/36‑3 (MQ=9)
     tttttGTTTGTTTTGT.GT.TTTTTTTTTTTTTttttt                                <  2:3146543/36‑3 (MQ=0)
     tttttGGTTGTTTTTG.TT.TTCTTTTTTCCTTttttt                                <  2:2950112/36‑3 (MQ=0)
     tttttGGTTGTTTTAT.TT.TTATTTGTTTTTTttttt                                <  2:3117471/36‑3 (MQ=2)
     tttttGCTTGTTTTTT.TG.TTGTTTTTTTCTTttgtg                                <  2:3328790/36‑4 (MQ=0)
     tttttATTTGTTGTTT.TT.TTGTTTTTTTTTTttttt                                <  2:3300394/36‑3 (MQ=2)
     tttttAGTTGTTCTTT.TT.TTGTCTTTTGTTAttttt                                <  2:3137025/36‑3 (MQ=0)
     tttttAGTTGTCTTGT.TT.TTGTTTTTTTCTATTTct                                >  1:2475464/1‑35 (MQ=255)
     ttttgAGTTGTTTTGC.TT.TTGTTTTTTTTTTttttt                                <  2:3617419/36‑3 (MQ=9)
      ttttTGTTTCCTTTT.TT.TTGTTTTTTTTTTtttttt                               <  2:3580883/36‑4 (MQ=2)
      ttttTGTTGTCTGTT.TT.TTTTTTTTTTTTTtttttt                               <  2:2911147/36‑4 (MQ=0)
       tttAGTTGTCTTGT.TT.TTGTTTTTTTCTATTTCGCa                              <  1:974633/36‑1 (MQ=255)
       tttAGTTGTCTTGT.TT.TTGTTTTTTTCTATTTCGCa                              >  2:2398218/1‑36 (MQ=255)
       tttAGTTGTCTTGT.TT.TTGTTTTTTTCTATTTCGCa                              <  2:1285665/36‑1 (MQ=255)
        ttAGTTGTCTTGT.TT.TTGTTTTTTTCTATTTCTCaa                             >  2:3645837/1‑36 (MQ=255)
         tAGTTGTCTTGT.TT.TTGTTTTTTTCTATTTCGCAat                            >  2:1133594/1‑36 (MQ=255)
          aGTTGTCTTGT.TT.TTGTTTTTTTCTATTTCTCAata                           >  2:3439238/1‑36 (MQ=255)
          aGTTGTCTTGT.TT.TTGTTTTTTTCTATTTCGCAata                           <  2:162197/36‑1 (MQ=255)
           gTTGTCTTGT.TT.TTGTTTTTTTCTATTTCGCAatat                          <  1:2821673/36‑1 (MQ=255)
           gTTGTCTTGT.TT.TTGTTTTTTTCTATTTCGCAatat                          <  2:800935/36‑1 (MQ=255)
             tGTCTTGT.TT.TTGTTTTTTTCTATTTCGCAATATTa                        <  2:3101595/36‑1 (MQ=255)
             tGTCTTGT.TT.TTGTTTTTTTCTATTTCGCAATATTa                        <  1:154748/36‑1 (MQ=255)
             tGTCTTGT.TT.TTGTTTTTTTCTATTTCGCAATATTa                        <  1:610406/36‑1 (MQ=255)
              gTCTTGT.TT.TTGTTTTTTTCTATTTCGCAATATTaa                       >  2:670225/1‑36 (MQ=255)
               tCTTGT.TT.TTGTTTTTTTCTATTTCGCAATATTAAt                      >  2:55150/1‑36 (MQ=255)
               tCTTGT.TT.TTGTTTTTTTCTATTTCGCAATATTAAt                      >  1:3607742/1‑36 (MQ=255)
                cTTGT.TT.TTGTTTTTTTCTATTTCGCAATATTAATg                     >  2:926368/1‑36 (MQ=255)
                cTTGT.TT.TTGTTTTTTTCTATTTCGCAATATTAATg                     >  1:3386959/1‑36 (MQ=255)
                cTTGT.TT.TTGTTTTTTTATATTTAGAAATATTTATg                     >  1:3385393/1‑36 (MQ=19)
                 ttgt.tt.ttgtttTTTTCTATTTCGCAATATTAATGa                    <  2:40208/36‑1 (MQ=255)
                  tgt.tt.ttgttttTTTCTATTTCGCAATATTAATGAc                   >  1:2864677/1‑36 (MQ=255)
                  tgt.tt.ttgttttTTTCTATTTCGCAATATTAATGAc                   <  1:328005/36‑1 (MQ=255)
                    t.tt.ttttttttTTTTATTTCGCAATATTAATGACAg                 >  2:3253840/1‑36 (MQ=37)
                    t.tt.ttgtttttTTCTATTTCGCAATATTAATGACAg                 >  1:80790/1‑36 (MQ=255)
                      tt.ttgtttttTTCTATTTCGCAATATTAATGACAgt                >  1:2075596/1‑36 (MQ=255)
                      tt.ttgtttttTTCTATTTCGCAATATTAATGACAgt                <  1:1571200/36‑1 (MQ=255)
                       t.ttgtttttTTCTATTTCGCAATATTAATGACTgtg               >  2:1740765/1‑36 (MQ=255)
                       t.ttgtttttTTCTATTTCGCAATATTAATGACAgtg               >  1:2967728/1‑36 (MQ=255)
                         ttgtttttTTCTATTTCGTAATATTAATGACAgtgt              >  1:2442516/1‑36 (MQ=255)
                          tgtttttTTCTATTTCGCAATATTAATGACAGTGTc             <  1:2933530/36‑1 (MQ=255)
                            tttttttCTATTTCGCAATATTAATGACAGTGTcag           >  2:3071993/1‑36 (MQ=255)
                              tttttCTATTTCGCAATATTAATGACAGTGTcagca         >  1:3396687/1‑36 (MQ=255)
                              tttttCTATTTCGCAATATTAATGACAGTGTcagca         <  1:2265981/36‑1 (MQ=255)
                              tttttCTAGTTCGCAATATTAATGACAGTGTcagca         <  1:3634158/36‑1 (MQ=255)
                                tttCTATTTCGCAATATTAATGACAGTGACAGCAGa       >  2:2565425/1‑36 (MQ=255)
                                 ttCTATTTCGCATTATTAATGACAGTGTCAGCAGat      <  1:3147568/36‑1 (MQ=255)
                                  tCTATGTCGAAAGATTAATGACAGTGTCAGCAGata     <  2:1172074/36‑1 (MQ=37)
                                    caTTTCGCAATATTAATGACAGTGTCAGCGGATATg   >  2:1715940/2‑36 (MQ=255)
                                     aTTTCGCAATATTAATGACAGTGTCAGCAGatattc  >  2:111343/1‑34 (MQ=255)
                                     |                                   
TGTTTTTTTTAGTTGTCTTGT.TT.TTGTTTTTTTCTATTTCGCAATATTAATGACAGTGTCAGCAGATATGC  >  REL606/4462981‑4463051

Base quality scores:  ATCG  < 3 ≤  ATCG  < 5 ≤  ATCG  < 10 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG