Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,424,8700G→T25.0% 11.441intergenic (+88/‑38)nirD/nirCnitrite reductase small subunit/nitrite transporter
Reads supporting (aligned to +/- strand):  new base (0/10):  ref base (4/26):  total (4/37)

CTTCGGTATATTGCAGGACATTTTTTAAACTTTTTG.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGATAATC  >  REL606/3424835‑3424905
                                   |                                      
cTTCGGTATATTGCAGGACATTTTTTAAACTTTTTg                                        <  1:3135749/36‑1 (MQ=255)
    ggTATATTGCAGGACATTTTTTAAACTTTTTG.ttt.t                                  <  2:538291/36‑1 (MQ=255)
      tataTTGCAGGACATTTTTTAAACTTTTTG.TTT.TAt                                <  1:1236580/36‑1 (MQ=255)
      tataTTGCAGGACATTTTTTAAACTTTTTG.TTT.TAt                                <  1:3247150/36‑1 (MQ=255)
       atatTGCAGGACATTTTTTAAACTTTTTG.TTT.TAtt                               >  1:1183741/1‑36 (MQ=255)
       atatTGCAGGACATTTTTTAAACTTTTTG.TTT.TAtt                               <  1:1282723/36‑1 (MQ=255)
        tatTGCAGGACATTTTTTAAACTTTTTG.TTT.TAtt.t                             <  2:1067867/36‑1 (MQ=255)
        tatTGCAGGACATTTTTTAAACTTTTTG.TTT.TAtt.t                             <  2:1067011/36‑1 (MQ=255)
          ttGCAGGACATTTTTTAAACTTTTTG.TTT.TAtt.ttt                           >  2:3535968/1‑36 (MQ=255)
           tGCAGGACATTTTTTAAACTTTTTG.TTT.TAtt.tttt                          <  1:2046500/36‑1 (MQ=255)
                 tttttttttTATGTTTTTG.TTT.TTCT.TTTTTttttt                    <  2:2870420/33‑1 (MQ=9)
                 ttcttttttACTTTTTTTG.TTT.TTTT.TTTTTttttt                    <  1:3016463/33‑1 (MQ=2)
                 ttaTTTTTTCTTCTTTTTT.TTT.TTTT.TGTTTttttt                    <  2:3281751/34‑1 (MQ=0)
                 tctttttttTTACTTTATT.TTT.TGTT.TTTTTttttt                    <  2:3366227/33‑1 (MQ=12)
                 aCATTTTTTAAACTTTTTG.TTT.TATT.TTTTGttttt                    >  1:3573144/1‑36 (MQ=255)
                  ttttttttATTTTTTTTG.TTT.TTTTGTTTTGttttt                    <  2:3468814/34‑1 (MQ=0)
                  tcttttttTCATTTTTTG.TTT.TTTT.TTTTTtttttt                   <  1:3543043/34‑2 (MQ=2)
                  cATTTTTTAAACTTTTTG.TTT.TATT.TTTTGTTTTTa                   <  2:61866/36‑1 (MQ=255)
                  aaTTTTTTTTTCTTTTTT.TCT.TTTT.TTTTGttattt                   <  2:3553285/35‑2 (MQ=2)
                   tttttttAATTTTTGGG.TTT.TATT.TTGTTTTCTTAt                  <  2:2709673/35‑1 (MQ=0)
                   gttttttATTTTTTTTG.TTT.TTTT.ATTTTttttttt                  <  2:3734748/35‑3 (MQ=0)
                   gttttttATTCTTTATT.TTT.TTTT.TTTTTttttttt                  <  2:3671910/35‑3 (MQ=2)
                   cttttttTTACTTTTTT.TTT.TGTT.TTTTTctttttt                  <  2:2781403/35‑3 (MQ=2)
                   cttttttATTTTTTCTT.TTT.TTTT.TTTTGttttttt                  <  2:3644893/35‑3 (MQ=9)
                   cttttttATTCTTTTTG.TTT.TCTT.TTTTTttttttt                  <  1:3198821/35‑3 (MQ=12)
                    ttttttTATTTTTTTG.TTTGTTTT.TTTTGttttttt                  <  2:3742731/36‑3 (MQ=0)
                    ttttttATTTTTTTTT.TTT.TGTT.TTTTTttttttgg                 <  2:2901300/36‑4 (MQ=2)
                     tttttATATCTTTTT.TTT.TATT.TTTTTTTTTTTttt                <  1:3112836/36‑1 (MQ=9)
                     tttttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAttt                >  2:807886/1‑36 (MQ=255)
                     tttttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAttt                <  1:2516067/36‑1 (MQ=255)
                      ttttATGCTTTTTT.TTT.TGTT.TTTTCTTTTCTtttt               <  2:2751020/36‑1 (MQ=0)
                      ttttATATTTTTTT.TGT.TATT.TTATTTTTTTTtttt               <  2:3281590/36‑1 (MQ=2)
                      ttttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAtttt               <  2:3006371/36‑1 (MQ=255)
                      ttttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAtttt               <  1:1804578/36‑1 (MQ=255)
                        ttAAACTTTTTG.TTT.TATT.TTTTGTTTTTAtttttt             <  2:829907/36‑1 (MQ=255)
                          aaaCTTTTTG.TTT.TATT.TTTTGTTTTTATTTTTTaa           <  2:3640737/36‑1 (MQ=255)
                          aaaCTTTTTG.TTT.TATT.TTTTGTTTTTATTTTTTaa           <  2:3298524/36‑1 (MQ=255)
                           taCTGTTTGTTTT.TATT.TTTTTTTATTTtttttttt           <  2:3385489/35‑3 (MQ=0)
                           aaCTTTTTG.TTT.TATT.ATTTGTTTTTATTTTTTaaa          <  1:2694106/36‑1 (MQ=255)
                            aCTTTTTCTTTT.TTTT.TTTTGTTTTTTttttttttt          <  2:3289803/36‑4 (MQ=2)
                               ttttG.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGAt      <  1:3642548/36‑1 (MQ=255)
                                 ttG.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGATaa    <  2:647030/36‑1 (MQ=255)
                                   g.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGATAATc  >  1:2941456/1‑36 (MQ=255)
                                   |                                      
CTTCGGTATATTGCAGGACATTTTTTAAACTTTTTG.TTT.TATT.TTTTGTTTTTATTTTTTAAAGGATAATC  >  REL606/3424835‑3424905

Base quality scores:  ATCG  < 3 ≤  ATCG  < 5 ≤  ATCG  < 11 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG