New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3944627 =36 (0.820)8 (0.180) 4/56 5.1 17.0% intergenic (+16/‑131) proM/aslB tRNA‑Pro/predicted regulator of arylsulfatase activity
?REL606 = 4157630 42 (0.760)coding (277/546 nt) nusG transcription antitermination protein NusG
Rejected: Position hash score below cutoff.

GGGAAAGTGACGAAATGCACAGAAAACAAAAAACCCCGCCGA...................................  <  REL606/3944668‑3944627
...................................CCGCCGATGAAGCCCATCACACGCGGTACGCTGCGCACCAGG  <  REL606/4157630‑4157596
                                                                             
                        AACAAAAACCCCCGCCGATGAAGCCCATCACACGCG                   <  1:685847/36‑1 (MQ=0)
                         ACAGAAAACCCCGCCGATGAAGCCCATCACACGCGG                  <  1:2709149/36‑1 (MQ=0)
                               acCCCCGCCGATGAAGCCCATCACACGCGGTACGCT            <  2:1925014/34‑1 (MQ=1)
                               acCCCCGCCGATGAAGCCCATCACACGCGGTACGCT            <  2:2316896/34‑1 (MQ=1)
                                ctCCCGCCGATGAAGCCCATCACACGCGGTACGCTG           <  1:2425187/34‑1 (MQ=1)
                                 CCCCGCCGATGAAGCCCATCACACGCGGTACGCTGC          <  2:2501921/36‑1 (MQ=1)
                                 CCCCGCCGATGAAGCCCATCACACGCGGTACGCTGC          <  2:3145682/36‑1 (MQ=1)
                                  CCCGCCGATGAAGCCCATCACACGCGGTACGCTGCG         <  1:241148/36‑1 (MQ=1)
                                                                             
GGGAAAGTGACGAAATGCACAGAAAACAAAAAACCCCGCCGA...................................  <  REL606/3944668‑3944627
...................................CCGCCGATGAAGCCCATCACACGCGGTACGCTGCGCACCAGG  <  REL606/4157630‑4157596

Base quality scores:  ATCG  < 3 ≤  ATCG  < 5 ≤  ATCG  < 12 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG