New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3651091 =NA (NA)68 (1.230) 34/70 0.2 NA noncoding (1/1443 nt) IS150 repeat region
?REL606 = 3741531 NA (NA)noncoding (435/768 nt) IS1 repeat region

TCCATTTCATCGTCCAACAAAATGGGTGCAGTACA...................................  <  REL606/3651125‑3651091
...................................GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACG  <  REL606/3741531‑3741497
                                                                      
TCCATTTCATCGTCCAACAAAATGGGTGCAGTGCAG                                    <  1:1214835/36‑1 (MQ=0)
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    <  2:1173786/36‑1 (MQ=1)
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    >  2:59916/1‑36 (MQ=1)
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    <  2:452752/36‑1 (MQ=1)
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    >  1:15189/1‑36 (MQ=1)
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    <  2:445368/36‑1 (MQ=1)
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    <  2:1662559/36‑1 (MQ=1)
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    <  2:2528710/36‑1 (MQ=1)
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    >  2:2654613/1‑36 (MQ=1)
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    >  2:312603/1‑36 (MQ=1)
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                    >  2:1437358/1‑36 (MQ=1)
 CCATTTCATCGTCCAACAAAATGGGTGCCGTACAGT                                   >  2:3076795/1‑36 (MQ=0)
 CCATTTCATCGTCCAACAAAATGGGTGCAGTACAGa                                   >  2:2326256/1‑35 (MQ=1)
 CCATTTCATCGTCCAACAAAATGGGTGCAGTACAGT                                   >  2:1702839/1‑36 (MQ=1)
 CCATTTCATCGTCCAACAAAATGGGTGCAGTACAGT                                   <  1:3591904/36‑1 (MQ=1)
 CCATTTCATCGTCCAACAAAATGGGTGCAGTACAGT                                   >  2:3195345/1‑36 (MQ=1)
 CCATTTCATCGTCCAACAAAATGGGTGCAGTACAGT                                   >  2:3498147/1‑36 (MQ=1)
 CCATTTCATCGTCCAACAAAATGGGTGCAGTACAGT                                   >  1:161687/1‑36 (MQ=1)
  CATTTCATCGTCCAACAAAATGGGTGCAGTACAGTA                                  <  1:1182154/36‑1 (MQ=1)
   ATTTCATCGTCCAACAAAATGGGTGCAGTACAGTAT                                 <  1:2277387/36‑1 (MQ=1)
    TTTCATCGTCCAACAAAATGGGTGCAGTACAGTATG                                <  1:460814/36‑1 (MQ=1)
    TTTCATCGTCCAACAAAATGGGTGCAGTACAGTATG                                <  1:1117527/36‑1 (MQ=1)
    TTTCATCGTCCAACAAAATGGGTGCAGTACAGAATG                                >  2:672282/1‑36 (MQ=0)
      TCATCGTCCAACAAAATGGGTGCAGTACAGTATGAC                              <  2:1401278/36‑1 (MQ=1)
      TCATCGTCCAACAAAATGGGTGCAGTACAGTATGAC                              <  2:1094471/36‑1 (MQ=1)
       CATCGTCCAACAAAATGGGTGCAGTACAGTATGACA                             >  1:2682544/1‑36 (MQ=1)
        ATCGTCCAACAAAATGGGTGCAGTACAGTATGACAG                            <  2:2000897/36‑1 (MQ=1)
        ATCGTCCAACAAAATGGGTGCAGTACAGTATGACAG                            <  2:2526169/36‑1 (MQ=1)
        ATCGTCCAACAAAATGGGTGCAGTACAGTATGACAG                            <  2:1318130/36‑1 (MQ=1)
        ATCGTCCAACAAAATGGGTGCAGTACAGTATGACAG                            <  1:555253/36‑1 (MQ=1)
        ATCGTCCAACAAAATGGGTGCAGTACAGTATGACAG                            >  1:1105631/1‑36 (MQ=1)
         TCGTCCAACAAAATGGGTGCAGTACAGTATGACAGT                           >  2:2413002/1‑36 (MQ=1)
         TCGTCCAACAAAATGGGTGCAGTACAGTATGACAGT                           <  2:1651043/36‑1 (MQ=1)
          CGTCCAACAAAATGGGTGCAGTACAGTATGACAGTC                          >  1:3548514/1‑36 (MQ=1)
           GTCCAACAAAATGGGTGCAGTACAGTATGACAGTCT                         <  2:2233090/36‑1 (MQ=1)
            tctAACAAAATGGGTGCAGTACAGTATGACAGTCTC                        <  1:2851044/33‑1 (MQ=0)
             CCAACAAAATGGGTGCAGTACAGTATGACATTCTCC                       >  2:3460085/1‑36 (MQ=0)
             CCAACAAAATGGGTGCAGTACAGTATGACAGTCTCC                       <  2:2647809/36‑1 (MQ=1)
             CCAACAAAATGGGTGCAGTACAGTATGACAGTCTCC                       <  2:2250504/36‑1 (MQ=1)
             CCAACAAAATGGGTGCAGTACAGTATGACAGCCTCC                       >  1:1351082/1‑36 (MQ=0)
              CAACAAAATGGGTGCAGTACAGTATGACAGTCTCCG                      >  2:1983538/1‑36 (MQ=1)
               AACAAAATGGGTGCAGTACAGTATGACAGTCTCCGG                     >  1:805812/1‑36 (MQ=1)
               AACAAAATGGGTGCAGTACAGTATGACAGTCTCCGG                     <  1:2929249/36‑1 (MQ=1)
               AACAAAATGGGTGCAGTACAGTATGACAGTCTCCGG                     >  1:3026381/1‑36 (MQ=1)
               AACAAAATGGGTGCAGTACAGTATGACAGTCTCCGG                     <  1:817230/36‑1 (MQ=1)
                 CAAAATGGGTGCAGTACAGTATGACAGTCTCCGGAA                   >  2:1690285/1‑36 (MQ=35)
                  AAAATTGGTGCAGTACAGTATGACAGTCTCCGGAAG                  >  2:3190905/1‑36 (MQ=255)
                   AAATGGGTGCAGTACAGTATGACAGTCTCCGGAAGA                 <  1:2663354/36‑1 (MQ=38)
                    AATGGGTGCAGTACAGTATGACAGTCTCCGGAAGAC                <  2:3206682/36‑1 (MQ=38)
                    AATGGGTGCAGTACAGTATGACAGTCTCCGGAAGAC                >  1:619376/1‑36 (MQ=38)
                    AATGGGTGCAGTACAGTATGACAGTATCCGGAAGAg                >  1:979132/1‑35 (MQ=255)
                      TGGGTGCAGTACAGTATGACAGTCTCCGGAAGACGG              <  1:1553603/36‑1 (MQ=38)
                      TGGGTGCAGTACAGTATGACAGTCTCCGGAAGACGG              >  2:2469817/1‑36 (MQ=38)
                       GGGTGAAGTACAGTATGACAGTCTCCGGAAGACGGT             <  1:47554/36‑1 (MQ=255)
                        GGTGCAGTACAGTATGACAGTCTCCGGAAGACGGTT            >  2:3061612/1‑36 (MQ=38)
                        GGTGCAGTACAGTATGACAGTCTCCGGAAGACGGTT            >  1:396138/1‑36 (MQ=38)
                        GGTGCAGTACAGTATGACAGCCTCCGGAAGACGGTT            >  1:3511842/1‑36 (MQ=0)
                          TGCAGTACAGTATGACAGTCTCCGGAAGACGGTTGT          >  2:2135925/1‑36 (MQ=38)
                           GCAGTACAGTATGACAGTCTCCGGAAGACGGTTGTT         <  2:875621/36‑1 (MQ=38)
                             AGTACAGTATGACAGTCTCCGGAAGACGGTTGTTGa       >  2:2432430/1‑35 (MQ=38)
                             AGTACAGTATGACAGTCTCCGGAAGACGGTTGTTGC       <  2:2956774/36‑1 (MQ=38)
                             AGTACAGTATGACAGTCTCCGGAAGACGGTTGTTGC       >  1:2408957/1‑36 (MQ=38)
                             AGTACAGTATGACAGTCTCCGGAAGACGGTTGTTGC       >  1:1481690/1‑36 (MQ=38)
                              GTACAGTATGACAGTCTCCGGAAGACGGTTGTTGCG      >  1:3612502/1‑36 (MQ=38)
                               TACAGTATGACAGTCTCCGGAAGACGGTTGTTGCGC     >  1:3137445/1‑36 (MQ=38)
                               TACAGTATGACAGTCTCCGGAAGACGGTTGTTGCGC     <  1:2433986/36‑1 (MQ=38)
                                  AGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACG  >  1:502166/1‑36 (MQ=38)
                                  AGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACG  >  2:931912/1‑36 (MQ=38)
                                                                      
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACA...................................  <  REL606/3651125‑3651091
...................................GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACG  <  REL606/3741531‑3741497

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG