New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1427340 =46 (0.890)6 (0.120) 4/66 5.7 13.2% intergenic (‑115/+26) ynaF/ompN stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific
?REL606 4022380 = 33 (0.600)intergenic (+39/‑116) dsbA/yihF periplasmic protein disulfide isomerase I/hypothetical protein
Rejected: Position hash score below cutoff.

TCAGTTCTAAATCCTCCTGCCCGCTGTTATGGCGGG..................................  <  REL606/1427375‑1427340
..................................GGGTTTTTTTTATTATTTAATAAATATAAATACATT  >  REL606/4022380‑4022413
                                                                      
 CAGTTCTAAATCCTCCTGCCCGCTGTTATGGCGGGG                                   >  1:880979/1‑36 (MQ=255)
  AGTTCTAAATCCTCCTGCCCGCTGTTATGGCGGGGT                                  >  1:827109/1‑36 (MQ=255)
  AGTTCTAAATCCTCCTGCCCGCTGTTATGGCGGGGT                                  >  2:2159241/1‑36 (MQ=255)
           TCCTCCTGCCCGCTGTTATGGCGGGGTTTTTTTTtt                         >  1:2830322/1‑34 (MQ=255)
              TCCTGCCCGCTGTTATGGCGGGGTTTTTTTTTTTAT                      >  1:146533/1‑36 (MQ=255)
               CCTGCCCGCTGTTATGGCGGGGTTTTTTTTTTTATT                     >  1:3014584/1‑36 (MQ=255)
                                                                      
TCAGTTCTAAATCCTCCTGCCCGCTGTTATGGCGGG..................................  <  REL606/1427375‑1427340
..................................GGGTTTTTTTTATTATTTAATAAATATAAATACATT  >  REL606/4022380‑4022413

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 12 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG