Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,560,6960G→T18.6% 11.961595yhiIpredicted HlyD family secretion protein
Reads supporting (aligned to +/- strand):  new base (11/0):  ref base (7/41):  total (19/42)

ATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATAT  >  REL606/3560661‑3560731
                                   |                                   
aTCGATATCTGCGGCAATGCGCCGTTCAGTGGCTtg                                     <  1:2372838/36‑1 (MQ=255)
 tCGATATCTGCGGCAATGCGCCGTTCAGTGGCTtgt                                    <  2:1951302/36‑1 (MQ=255)
   gATATCTGCGGCAATGCGCCGTTCAGTGGTTtgttg                                  >  2:3653321/1‑34 (MQ=37)
   gATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGc                                  <  2:1156676/36‑1 (MQ=255)
       tCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCt                              <  2:3289971/36‑1 (MQ=255)
        cTGCGGCAATGCGCCGTTCAGTGGCTTTTGCCGCtt                             >  1:1472036/1‑36 (MQ=255)
         tGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTc                            <  2:367027/36‑1 (MQ=255)
            ggCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGAc                         <  1:3662404/36‑1 (MQ=255)
             gCAGTGCGCCGTTCAGTGGCTTGTGCCGCTTCGAcg                        <  2:2167024/36‑1 (MQ=255)
             gCAATGCGCCGTTCAGTGGCTTTTTCCGCTTCgccc                        >  1:679027/1‑33 (MQ=18)
               aaTGCGCCGTTCAGTGGCTTGTGCCGCTTCGAcgcg                      <  1:1910529/36‑1 (MQ=255)
               aaTGCGCCGTTCAGTGGCTTGTGCCGCTTCGAcgcg                      <  1:2576679/36‑1 (MQ=255)
                aTGCGCCGTTCAGTGGCTTTTGCCGCTTCGCCCCgg                     >  2:1866100/1‑36 (MQ=21)
                aTGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCgg                     <  1:3394910/36‑1 (MQ=255)
                 tGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCggg                    <  1:2361274/36‑1 (MQ=255)
                  gcgcCGTTCAGTGGCTTTTGCCGGTTTTCCGCGGGt                   >  2:2008882/1‑36 (MQ=9)
                  gcgcCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGt                   <  2:1649806/36‑1 (MQ=255)
                   cgcCGTTCAGTGGCTTTTTCCGCTTTGTTGCggggt                  >  1:2268091/1‑34 (MQ=9)
                   cgcCGTTCAGTGGCTTTTTCCGCTTCTACTCggggt                  >  2:1099067/1‑34 (MQ=16)
                    gcCGTTCCGGGGCTTCTGCCGCTTCGACGCGGGttt                 <  2:3746471/36‑1 (MQ=21)
                    gcCGTTCAGTGGCTTTTGTCGGTTTTTCGCGGGgtt                 >  2:2870370/1‑36 (MQ=2)
                    gcCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGttt                 <  1:3250838/36‑1 (MQ=255)
                    gcCGTTCAGGGGCGTGTGCCGCTTCGACGCGGGttt                 <  1:1469826/36‑1 (MQ=38)
                     ccGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTg                <  1:2242186/36‑1 (MQ=255)
                     ccGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTg                <  1:1924328/36‑1 (MQ=255)
                     ccGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTg                <  1:1716810/36‑1 (MQ=255)
                     ccGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTg                <  2:3658009/36‑1 (MQ=255)
                     ccGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTg                <  2:721191/36‑1 (MQ=255)
                      cGTTCAGTGGCTTTTGCCGCTTCGACGCGGGttttc               >  2:1551871/1‑34 (MQ=37)
                      cGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTgc               <  1:787404/36‑1 (MQ=255)
                      cGTTCAATGGCTTGTGCCGCTTCGACGCGGGTTTgc               <  1:1476206/36‑1 (MQ=255)
                       gTTCAGTGGCTTTTGTCGCTTCGACGCGGGGTTgcg              >  1:2434393/1‑36 (MQ=25)
                       gTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTgcg              <  2:1781229/36‑1 (MQ=255)
                        ttCAGTGGCTTTTGTCGCTTTGTCGCGGGGTTgtgc             >  2:2635349/1‑36 (MQ=2)
                        ttCAGTGGCTTGTGCCGCTTCGACGCGGGTTTgcgg             <  1:2085269/36‑2 (MQ=255)
                         tCAGTGGCTTTTGCCGCTTCGACCCGGGGTTTCGcc            >  2:2423163/1‑36 (MQ=16)
                         tCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGcc            <  1:2139356/36‑1 (MQ=255)
                          cAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCt           <  2:545458/36‑1 (MQ=255)
                          cAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCt           <  1:1235519/36‑1 (MQ=255)
                          cAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCt           <  2:2042790/36‑1 (MQ=255)
                          cAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCt           <  2:3123444/36‑1 (MQ=255)
                          cAGAGGCTTGTGCCGCTTCGCCGCGGGTTTGCGCCt           <  2:1426592/36‑1 (MQ=37)
                           aGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTg          <  2:2579163/36‑1 (MQ=255)
                           aGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTg          <  1:1927025/36‑1 (MQ=255)
                            gTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGa         <  1:229465/36‑1 (MQ=255)
                            gTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGa         <  2:1471930/36‑1 (MQ=255)
                            gTGGCTTATGCCGCCTCGACGCGGGTTTGCGCCtca         >  1:2090538/1‑34 (MQ=21)
                            gTGCCTTGTACCGCTTCGACGCGGGTTTGCGCCTGa         <  1:2247122/36‑1 (MQ=37)
                             tGGCTTGTGCCGCTTCGGCGCGGGTTTGCGCCTGaa        <  1:1003939/36‑1 (MQ=255)
                             tGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGaa        <  1:3095677/36‑1 (MQ=255)
                              ggCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGact       >  2:3652719/1‑34 (MQ=255)
                              ggCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAAt       >  2:2462913/1‑36 (MQ=255)
                              ggCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAAt       <  1:1488856/36‑1 (MQ=255)
                              ggCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAAt       <  1:2013224/36‑1 (MQ=255)
                               gCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATg      >  1:469825/1‑36 (MQ=255)
                               gCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATg      <  2:3723568/36‑1 (MQ=255)
                               gCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATg      >  2:3466314/1‑36 (MQ=255)
                               gCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATg      >  2:1802486/1‑36 (MQ=255)
                                cTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGa     >  1:2928239/1‑36 (MQ=255)
                                cTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGa     >  2:169042/1‑36 (MQ=255)
                                 ttGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGat    <  2:275318/36‑1 (MQ=255)
                                 ttGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGat    <  1:2756592/36‑1 (MQ=255)
                                 ttGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGat    <  1:1412685/36‑1 (MQ=255)
                                 ttGTGCCACTTCGACGCGGGTTTGCGCCTGAATGat    <  1:2837093/36‑1 (MQ=255)
                                  tgtgCCGCTTCGACGCGGGTTTGCGCCTGAATGata   >  1:897689/1‑36 (MQ=255)
                                  tgtgCCGCTTCGACGCGGGTTTGCGCCTGAATGata   <  2:1848466/36‑1 (MQ=255)
                                  tgtgCCGCTTCGACGCGGGCTTGCGCCTGAATGata   >  1:2656283/1‑36 (MQ=255)
                                   gtgCCGCTTCGACGCGGGTTTGCGCCTGAATGatat  >  2:398061/1‑36 (MQ=255)
                                   gtgCCGCTTCGACGCGGGTTTGCGCCTGAATGatat  <  1:2969899/36‑1 (MQ=255)
                                   |                                   
ATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATAT  >  REL606/3560661‑3560731

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 14 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG