New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664688 =NA (NA)35 (0.670) 24/66 0.8 100% noncoding (1/1443 nt) IS150 repeat region
?REL606 1270660 = 0 (0.000)intergenic (‑167/+238) ldrC/chaA toxic polypeptide, small/calcium/sodium:proton antiporter

GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATG  >  REL606/664653‑664720
                                   |                                
gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGtttt                                  <  1:3601605/36‑1 (MQ=255)
gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGtttt                                  <  1:62270/36‑1 (MQ=255)
gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGtttt                                  <  1:2075810/36‑1 (MQ=255)
 cGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTg                                 >  2:1730050/1‑36 (MQ=255)
 cGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTg                                 >  1:877652/1‑36 (MQ=255)
 cGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTg                                 <  1:597886/36‑1 (MQ=255)
 cGTGAGCAGAAAGCCCGACACGCTCCAGCAGCTTTg                                 >  1:3636523/1‑36 (MQ=255)
  gTGAGCAGAAAGCCCGACACGCTCCTGCAGTTTTGt                                >  1:3265473/1‑36 (MQ=255)
   tGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTa                               >  1:1216043/1‑36 (MQ=255)
     aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTatt                             >  1:2406996/1‑34 (MQ=255)
     aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTatt                             >  1:215942/1‑34 (MQ=255)
     aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACt                             <  2:3507723/36‑1 (MQ=255)
      gCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg                            <  2:1133954/36‑1 (MQ=255)
      gCAGAAAGCCCGACACGCTCAAGCAGTTTTGTACTg                            >  2:3414149/1‑36 (MQ=255)
       cAGAAAGCCCGACACGCTCCAGCAGTTTTGTATTGc                           >  1:2983332/1‑36 (MQ=255)
        aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCa                          <  2:51556/36‑1 (MQ=255)
         gAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAc                         >  1:2152457/1‑36 (MQ=255)
         gAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAc                         >  2:1927517/1‑36 (MQ=255)
           aaGCCCGACACGCTCCAGCAGTTTTGTACTGCAccc                       <  2:2750414/36‑1 (MQ=255)
           aaGCCCGACACGCTCCAGCAGTTTTGTACTGCAccc                       >  2:516244/1‑36 (MQ=255)
              cccGACACGCTCCAGCAGTTTTGTACTGCACCCAtt                    >  2:1407183/1‑36 (MQ=255)
              cccGACACGCTCCAGCAGTTTTGTACTGCACCCAtt                    >  2:2516055/1‑36 (MQ=255)
              cccGACACGCTCCAGCAGTTTTGTACTGCACCCAtt                    >  1:2400886/1‑36 (MQ=255)
              cccGACACGCTCCAGCAGTTTTGTACTGCACCCAtt                    >  2:396132/1‑36 (MQ=255)
               ctgACACGCTCCAGCAGTTTTGTACTGCACCCAttt                   <  1:430434/34‑1 (MQ=255)
                cGACACGCTCCAGCAGTTTTGTACTGCACCCAtttt                  <  2:2140129/36‑1 (MQ=255)
                cGACACGCTCCAGCAGTTTTGTACTGCACCCAttct                  >  1:1155800/1‑34 (MQ=255)
                 gACACGCTCCAGCAGTTTTGTACTGCACCCATTttg                 <  2:3600776/36‑1 (MQ=255)
                 gACACGCTCCAGCAGTTTTGTACTGCACCCATTttg                 <  2:1142888/36‑1 (MQ=255)
                  acacGCTCCAGCAGTTTTGTACTGCACCCATTttgt                >  2:499266/1‑36 (MQ=255)
                   cacGCTCCAGCAGTTTTGTACTGCACCCATTttgtt               >  2:70738/1‑36 (MQ=255)
                   cacGCTCCAGCAGTTTTGTACTGCACCCATTttgtt               <  1:1180451/36‑1 (MQ=255)
                    acGCTCCAGGAGTTTTGTACTGCACCCATTttgttg              <  1:2442207/36‑1 (MQ=255)
                    acGCTCCAGCAGTTTTGTACTGCACCCATTttgttg              <  2:1664549/36‑1 (MQ=255)
                    acGCTCCAGCAGTTTTGTACTGCACCCATTttgttg              >  2:1605771/1‑36 (MQ=255)
                     cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTgg             <  1:2482497/36‑1 (MQ=255)
                      gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGa            >  2:467295/1‑36 (MQ=255)
                      gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGa            >  2:3600177/1‑36 (MQ=255)
                        ttcagcagTTTTGTACTGCACCCATTTTGTTGGTCg          >  2:2884327/3‑36 (MQ=18)
                        tCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACg          >  1:1396514/1‑36 (MQ=255)
                        tCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACg          >  2:1681358/1‑36 (MQ=255)
                          cagcagTTTTGTACTGCACCCATTTTGTTGGACGAt        <  2:2056043/36‑1 (MQ=255)
                          cagcagTTTTGTACTGCACCCATTTTGTTGGACGAt        >  1:1528047/1‑36 (MQ=255)
                           agcagTTTTGTACTGCACCCATTTTGTTGGACGATg       >  2:2322748/1‑36 (MQ=255)
                           agcagTTTTGTACTGCACCCATTTTGTTGGACGATg       <  2:2956808/36‑1 (MQ=255)
                           agcagTTTTGTACTGCACCCATTTTGTTGGACGATg       <  1:1477159/36‑1 (MQ=255)
                            gcagTTTTGTACTGCACCCATTTTGTTGGACGATGa      <  1:1979032/36‑1 (MQ=255)
                            gcagTTTTGTACTGCACCCATTTTGTTGGACGATGa      >  1:3065644/1‑36 (MQ=255)
                            gcagTTTTGTACTGCACCCATTTTGTTGGACGATGa      >  2:366822/1‑36 (MQ=255)
                             cagTTTTGTACTGCACCCATTTTGTTGGACGATGaa     >  2:2131628/1‑36 (MQ=255)
                             cagTTTTGTACTGCACCCATTTTGTTGGACGATGaa     <  2:340338/36‑1 (MQ=255)
                              agTTTTGTACTGCACCCATTTTGTTGGACGATGaaa    >  2:2316583/1‑36 (MQ=40)
                               gTTTTGTACTGCACCCATTTTGTTGGACGATGAAAt   >  1:338508/1‑36 (MQ=38)
                                ttttGTACTGCACCCATTTTGTTGGACGATGAAATg  <  2:3307574/36‑1 (MQ=35)
                                ttttGTACTGCACCCATTTTGTTGGACGATGAAATg  >  1:1329317/1‑36 (MQ=35)
                                ttttGTACTGCACCCATTTTGTTGGACGATGAAATg  >  1:2571628/1‑36 (MQ=35)
                                ttttGTACTGCACACATTTTGTTGGACGATGAAATg  >  1:2613620/1‑36 (MQ=255)
                                   |                                
GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATG  >  REL606/664653‑664720

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 21 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG