New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3749572 | 40 (0.880) | 8 (0.180) | 4/58 | 5.2 | 16.5% | intergenic (‑65/+33) | mutM/rpmG | formamidopyrimidine‑DNA glycosylase/50S ribosomal protein L33 |
? | REL606 | = 4157631 | 41 (0.740) | coding (278/546 nt) | nusG | transcription antitermination protein NusG | |||||
Rejected: Position hash score below cutoff. |
AGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCG................................... > REL606/3749533‑3749572
..................................CCGCCGATGAAGCCCATCACACGCGGTACGCTGCGCACCAG < REL606/4157631‑4157597
AACAAAAACCCCCGCCGATGAAGCCCATCACACGCG < 1:685847/36‑1 (MQ=0)
ACAGAAAACCCCGCCGATGAAGCCCATCACACGCGG < 1:2709149/36‑1 (MQ=0)
acCCCCGCCGATGAAGCCCATCACACGCGGTACGCT < 2:1925014/34‑1 (MQ=1)
acCCCCGCCGATGAAGCCCATCACACGCGGTACGCT < 2:2316896/34‑1 (MQ=1)
ctCCCGCCGATGAAGCCCATCACACGCGGTACGCTG < 1:2425187/34‑1 (MQ=1)
CCCCGCCGATGAAGCCCATCACACGCGGTACGCTGC < 2:2501921/36‑1 (MQ=1)
CCCCGCCGATGAAGCCCATCACACGCGGTACGCTGC < 2:3145682/36‑1 (MQ=1)
CCCGCCGATGAAGCCCATCACACGCGGTACGCTGCG < 1:241148/36‑1 (MQ=1)
AGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCG................................... > REL606/3749533‑3749572
..................................CCGCCGATGAAGCCCATCACACGCGGTACGCTGCGCACCAG < REL606/4157631‑4157597
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 5 ≤
ATCG
< 12 ≤
ATCG
< 27 ≤
ATCG
< 32 ≤
ATCG
|