New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1427340 =46 (0.890)6 (0.120) 4/66 5.7 13.2% intergenic (‑115/+26) ynaF/ompN stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific
?REL606 4022380 = 33 (0.600)intergenic (+39/‑116) dsbA/yihF periplasmic protein disulfide isomerase I/hypothetical protein
Rejected: Position hash score below cutoff.

ATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGA  >  REL606/1427305‑1427375
                                   |                                   
aTTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGc                                     >  1:824476/1‑36 (MQ=255)
 gttAGAGCAAAGGAGGAAGAATAAGCAGAAAAAGcc                                    <  1:810879/35‑1 (MQ=255)
   tAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCg                                  <  1:1438011/36‑1 (MQ=255)
    aGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGc                                 >  1:2711244/1‑36 (MQ=255)
    aGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGc                                 <  1:313134/36‑1 (MQ=255)
     gaccAAAGGAGGAAGAAAAAGCAGAAAAAGCCCGcc                                <  1:3452240/33‑1 (MQ=37)
      aTCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCa                               >  2:2496097/1‑36 (MQ=255)
      aTCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCa                               >  2:2561304/1‑36 (MQ=255)
      aTCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCa                               <  2:2636612/36‑1 (MQ=255)
       tCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCAt                              >  2:919824/1‑36 (MQ=255)
        cAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCaca                             >  1:2684626/1‑34 (MQ=255)
        cAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATa                             >  2:359978/1‑36 (MQ=255)
        cAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATa                             >  1:21486/1‑36 (MQ=255)
         aaaGGAGGAAGAATAAGCAGAAAAAGCCCGCCATaa                            >  1:1844630/1‑36 (MQ=255)
         aaaGGAGGAAGAATAAGCAGAAAAAGCCCGCCATaa                            >  1:2273778/1‑36 (MQ=255)
         aaaGGAGGAAGAATAAGCAGAAAAAGCCCGCCATaa                            >  1:3072155/1‑36 (MQ=255)
          aaGGAGGACGAATAAGCAGAAAAAGCCCGCCATAAc                           >  2:936916/1‑36 (MQ=255)
          aaGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAAc                           >  1:3716312/1‑36 (MQ=255)
          aaGGAGGAAGAATAAGAAGAAAAACCCCGCCATAAc                           <  2:3101630/36‑1 (MQ=37)
           aggaggAAAAATAAGAAAAAAAAGCCCGCCATAACa                          <  1:3527121/36‑1 (MQ=18)
            ggaggaAGAATAAGCAGAAAAAGCCCGCCATAACAg                         >  1:1264659/1‑36 (MQ=255)
             gaggaAGAATAAGCAGAAAAAGCCCGCCATAACAGc                        >  2:2014358/1‑36 (MQ=255)
              aggaAGAATAAGCAGAAAAAGCCCGCCATAACAGCg                       >  1:988081/1‑36 (MQ=255)
              aagaagaaAAAAAAAAAAAAGCCCGCCATAACAGCg                       <  1:2507609/34‑1 (MQ=16)
               ggaAGAATAAGCAGAAAAAGCCCGCCATAACAGCgg                      >  2:2297077/1‑36 (MQ=255)
               ggaAGAATAAGCAGAAAAAGCCCGCCATAACAGCgg                      >  1:758085/1‑36 (MQ=255)
                   gaaTAAGCAGAAAAAGCCCGCCATAACAGCGGGCag                  >  1:1722291/1‑36 (MQ=255)
                   gaaTAAGCAGAAAAAGCCCGCCATAACAGCGGGCag                  >  1:707336/1‑36 (MQ=255)
                   gaaTAAGCAGAAAAAGCCCGCCATAACAGCGGCCag                  >  2:1906465/1‑36 (MQ=255)
                     aTAAGAAAAAAAAGCCCGCCATAACAGCGGGCagga                <  1:359964/36‑1 (MQ=37)
                      tAAGCAGAAAAAGCCCGCCATAACAGCGGGGaggag               >  1:3520984/1‑36 (MQ=255)
                       aaGCAGAAAAAGCCCGCCATAACAGCGGGCaggagg              >  1:1144802/1‑36 (MQ=255)
                          cAGAAAAAGCCCGCCATAACAGCGGGCAggaggagt           >  2:2788287/1‑34 (MQ=255)
                          cAGAAAAAGCCCGCCATAACACCGGGCAGGAGGAtt           >  1:3260723/1‑36 (MQ=255)
                          aaaaaagaGCCCGCCATAACAGCGGGCAGGAGGAtt           <  2:1599535/33‑1 (MQ=38)
                           aGAAAAGCCCCGCCATAACAGCGGGCAGGAGGAttt          <  1:1369886/36‑1 (MQ=38)
                           aGAAAAAGCCCGCCATAACAGCGGGCAGGAGGAttt          >  1:3438489/1‑36 (MQ=255)
                            gAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTa         >  2:381390/1‑36 (MQ=255)
                             aaaacGCCCGCCATAACAGCGGGCAGGAGGATTTAg        <  2:2812699/36‑1 (MQ=255)
                              aaaaGCCCGCCATAACAGCGGGCAGGAGGATTTAGa       >  2:1667271/1‑36 (MQ=255)
                               aaaGCCCGCCATAACAGCGGCCAGGAGGACTTAGaa      >  2:1288470/1‑36 (MQ=37)
                                aaGCCCGCCATAACAGCGGGCAGGAGGATTTAGAAc     >  2:168764/1‑36 (MQ=255)
                                 accccGCCATAACAGCGGGCAGGAGGATTTAGAACt    <  2:2159241/34‑1 (MQ=255)
                                 accccGCCATAACAGCGGGCAGGAGGATTTAGAACt    <  1:827109/34‑1 (MQ=255)
                                 aGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACt    <  1:427855/36‑1 (MQ=255)
                                 aGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACt    >  2:2951591/1‑36 (MQ=255)
                                 aGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACt    >  2:918955/1‑36 (MQ=255)
                                  gCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTg   >  1:445223/1‑36 (MQ=255)
                                  gCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTg   >  2:281309/1‑36 (MQ=255)
                                  ccccGCCATAACAGCGGGCAGGAGGATTTAGAACTg   <  1:880979/35‑1 (MQ=255)
                                   cccGCTATAACAGCGGGCAGGAGGATTTAGAACTGa  <  1:1187548/36‑1 (MQ=255)
                                   cccGCCATAACAGCGGGCAGGAGGATTTAGAACTGa  >  1:789526/1‑36 (MQ=255)
                                   cccGCCATAACAGCGGGCAGGAGGATTTAGAACTGa  <  1:3134134/36‑1 (MQ=255)
                                   |                                   
ATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGA  >  REL606/1427305‑1427375

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG