Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp intergenic (‑14/‑514) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16972 =0 (0.070)62 (1.130) 23/70 1.1 100% intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 588495 = NA (NA)noncoding (1/1977 nt) IS150 repeat region
* ? REL606 = 169740 (0.000)52 (1.000) 27/66 0.6 100% intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 590471 NA (NA)noncoding (1977/1977 nt) IS150 repeat region

CTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTG...................................  >  REL606/16940‑16974
...................................TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  REL606/590471‑590435
                                                                        
  CTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGT                                    <  2:1878643/36‑1 (MQ=255)
   TACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTA                                   >  1:3118647/1‑36 (MQ=255)
    ACATGTGTTCAGCATGTAGGGGGCCTCGGGTTGTAC                                  <  2:2028095/36‑1 (MQ=255)
    ACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTAC                                  <  2:3186121/36‑1 (MQ=255)
    ACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTAC                                  >  1:2260557/1‑36 (MQ=255)
     CATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACT                                 <  2:2876993/36‑1 (MQ=255)
     CATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACT                                 <  1:2732254/36‑1 (MQ=255)
      ATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTG                                >  2:2951566/1‑36 (MQ=255)
      ATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTG                                >  1:1214723/1‑36 (MQ=255)
       TGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGA                               <  1:1058422/36‑1 (MQ=255)
       TGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGA                               <  2:464831/36‑1 (MQ=255)
        GTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGAC                              <  1:2915708/36‑1 (MQ=255)
        GTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGAC                              >  1:260324/1‑36 (MQ=255)
           TTCTGCATATAGGGGGCCTCGGGTTGTACTGACCCt                           <  2:1587936/36‑2 (MQ=255)
           TTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCC                           <  2:3130401/36‑1 (MQ=255)
           TTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCC                           <  1:2972812/36‑1 (MQ=255)
            TCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCA                          <  2:594939/36‑1 (MQ=255)
            TCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCA                          <  1:1832588/36‑1 (MQ=255)
            TCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCA                          >  1:1527195/1‑36 (MQ=255)
             CAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAA                         >  1:97758/1‑36 (MQ=255)
               GCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAA                       <  2:1541190/36‑1 (MQ=255)
               GCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAA                       <  1:3646995/36‑1 (MQ=255)
               GCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAA                       <  2:3674046/36‑1 (MQ=255)
                CATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAA                      >  1:1513629/1‑36 (MQ=255)
                 ATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAG                     <  2:2528263/36‑1 (MQ=255)
                 ATATAGGGAGCCTCGGGTTGTACTGACCCCAAAAAG                     <  1:2562359/36‑1 (MQ=255)
                  TATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGT                    <  1:2552035/36‑1 (MQ=255)
                  TATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGT                    <  1:1849788/36‑1 (MQ=255)
                    TAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGATG                  >  1:3727708/1‑36 (MQ=255)
                      GGGGGCCGCGGGTTGTACTGACCCCAAAAAGTTGGA                <  2:1741574/36‑1 (MQ=255)
                        gaGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACA              <  1:2249972/34‑1 (MQ=255)
                         GGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAG             <  1:3242481/36‑1 (MQ=255)
                          gtCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGT            <  1:2234748/34‑1 (MQ=255)
                           CCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTc           <  2:3678198/36‑2 (MQ=255)
                           CCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTT           <  2:2411675/36‑1 (MQ=255)
                           CCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTT           <  2:3198632/36‑1 (MQ=255)
                           CCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTT           <  1:3398436/36‑1 (MQ=255)
                            CTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTA          <  2:2614441/36‑1 (MQ=255)
                            CTCGGGTTGTACTGACCCCAAAAAGTTGAACAGTTA          >  2:814709/1‑36 (MQ=255)
                             TCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAA         >  1:812306/1‑36 (MQ=255)
                              CGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA        <  2:1891876/36‑1 (MQ=40)
                              CGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA        <  1:466506/36‑1 (MQ=40)
                              CGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA        >  1:3483415/1‑36 (MQ=40)
                               GGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC       >  2:1319761/1‑36 (MQ=38)
                               GGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC       >  1:2245043/1‑36 (MQ=38)
                                GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA      <  2:31727/36‑1 (MQ=35)
                                GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA      >  2:1254202/1‑36 (MQ=35)
                                 GTTTTACTGACCCCAAAAAGTTGGACAGTTAAACAC     <  2:2144342/36‑1 (MQ=12)
                                 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC     >  2:1724725/1‑36 (MQ=32)
                                 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC     <  2:3461882/36‑1 (MQ=32)
                                 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC     <  2:3650332/36‑1 (MQ=32)
                                 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC     >  1:1315193/1‑36 (MQ=32)
                                                                        
CTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTG...................................  >  REL606/16940‑16974
...................................TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  REL606/590471‑590435

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 32 ≤  ATCG