Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6061,029,2450A→C32.1% 13.857154pqiAparaquat‑inducible membrane protein A
Reads supporting (aligned to +/- strand):  new base (2/16):  ref base (27/11):  total (29/28)

TAACCGTGGCGTGGGATGCCCCTCGGCAGCGTCCCACCGCCTATGCGTTGGCTGCACTGTTCATGCTGTTG  >  REL606/1029210‑1029280
                                   |                                   
tAACCGTGGCGTGGGATGCCCCTCGGCAGCGTCCCa                                     <  1:3147178/36‑1 (MQ=255)
 aaCCGTGGCGTGGGATGCCCCTCGGCAGCGTCCCAc                                    >  1:778033/1‑36 (MQ=255)
 aaCCGTGGCGTGGGATGCCCCTCGGCAGCGTCCCAc                                    >  1:1224224/1‑36 (MQ=255)
  aCCGTGGCGTGGGATGCCCCTCGGCAGCGTCCCAcc                                   >  2:636306/1‑36 (MQ=255)
  aCCGTGGCGTGGGATGCCCCTCGGCAGCGTCCCAcc                                   >  2:2583859/1‑36 (MQ=255)
   ccGTGGCGTGGGATGCCCCTCGGCAGCGTCCCACCg                                  <  2:2276621/36‑1 (MQ=255)
    cgtggcgtggGATGCCCCTCGGCAGGGTCCCACCGc                                 >  1:562852/1‑36 (MQ=255)
    cgtggcgtggGATGCCCCTCGGCAGCGTCTCACCGc                                 >  1:250922/1‑36 (MQ=255)
    cgtggcgtggGATGCCCCTCGGCAGCGTCCCACCGc                                 >  1:2630575/1‑36 (MQ=255)
     gtggcgtggGATGCCCCTCGGCAGCGTCCCACCGcc                                >  1:903831/1‑36 (MQ=255)
      tggcgtggGATGCCCCTCGGCAGCGTCCCACCGCCt                               <  1:788149/36‑1 (MQ=255)
      tggcgtggGATGCCCCTCGGCAGCGTCCCACCGCCt                               <  2:2722989/36‑1 (MQ=255)
      tggcgtggAATGCCCCCCGGCAGCGTCCCACCGCCt                               <  1:2263065/36‑1 (MQ=37)
       ggcgtggGATGCCCCTCGGCAGCGTCCCACCGCCTa                              <  2:625994/36‑1 (MQ=255)
       gacgtgaGATCCCCCTCGGCAGCGTCCCACCGCCTa                              <  1:1069723/34‑1 (MQ=37)
        gcgtggGATGCCCCTCGGCAGCGTCCCACCGCCCAt                             >  1:2391260/1‑36 (MQ=255)
         ggtggGTTCCCCCCCGGCGGCGCCCCCCCGCCTATg                            <  2:3052532/35‑1 (MQ=9)
         ggtggGACGCCCCGCGGGGGCCCCCCCCCGCCTATg                            <  2:146791/35‑1 (MQ=255)
          gtggGATGCCCCTCGGCCGCGCGCCCCCGCCTATGc                           >  2:1480722/1‑36 (MQ=19)
          gtggGATGCCCCTCGGCAGCGTCCCACCGCCTATGc                           >  2:2841551/1‑36 (MQ=255)
           tggGATGCCCCTCGGCAGCGTCCCACCGCCTATTCg                          >  2:3377299/1‑36 (MQ=255)
           tggGATGCCCCTCGGCAGCGTCCCACCGCCTATGCg                          >  2:2062804/1‑36 (MQ=255)
            gggACGCCCCTCGGCTGCGTCCCCCCGCCTATGCGt                         <  2:2886857/36‑1 (MQ=25)
             ggATGCCCCTCGGCAGCGTCCCACCGCCTATGCgct                        >  1:2195718/1‑34 (MQ=255)
             ggACGCCCCCCGCCAGCCCCCCACCGCCTATGCGtt                        <  2:418723/36‑1 (MQ=16)
              gATGCCCCTCGGCAGCGTCCCCCCGCCTCTGCGTTg                       >  1:3312994/1‑36 (MQ=37)
              gATGCCCCTCGGCAGCGTCCCACCGCCTATGCGTTg                       >  1:1542674/1‑36 (MQ=255)
               cccccccCCGGCACCCCCCCCCCGCCTATGCGTTgg                      <  2:3352693/33‑1 (MQ=12)
               accccccCCGCCAGCCCCCCCCCGCCTATGCGTTgg                      <  2:1115408/33‑1 (MQ=12)
               accccccCCGCCACCGCCCCCCCGCCTATGCGTTgg                      <  2:2980712/33‑1 (MQ=12)
                tcccccCCGCCAGCGCCCCCCCGCCTATGCGTTGGc                     <  2:1326233/34‑1 (MQ=12)
                 cccccTCGCCACCCCCCCCCCGCCTATGCGTTGGCt                    <  2:2485577/35‑1 (MQ=16)
                  ccccTGGGCAGCGCCCCCCCGCCTATGCGTTGGCTg                   <  2:1643442/36‑1 (MQ=25)
                    ccTCGGCAGCGTCCCACCGCCTATGCGTTGGCCGCa                 >  2:1703385/1‑36 (MQ=255)
                     cTCGGCAGCGTCCCACCGCCTATGCGTTGGCTGCAc                >  1:2450287/1‑36 (MQ=255)
                     cTCGGCAGCGTCCCACCGCCTATGCGTTGGCTGCAc                >  1:1339821/1‑36 (MQ=255)
                     cTCGGCAGCGTCCCACCCCCTATGCGTTGGCTggat                >  1:204654/1‑33 (MQ=37)
                     cTCGGCAGCGTCCCACCCCCTATGCCTTGGCCGCAc                >  1:632415/1‑36 (MQ=25)
                      tCGGCGGCGTCTCACCGCCTATGCGTTGGCTGCACt               <  2:2533038/36‑1 (MQ=37)
                      tCGGCAGCGTCCCACCGCCTATGCGTTGGCTGCCCt               >  2:2763698/1‑36 (MQ=255)
                        ggCAGCGTCCCACCGCCTATGCGTTGGCTGCACTGt             >  2:1317795/1‑36 (MQ=255)
                        gccAGCGCCCCCCCGCCTATGCGTTGGCTGCACTGt             <  1:1017103/34‑1 (MQ=25)
                           aGCGTCCCACCGCCTATGCGTTGGCTGCATTGTTCa          >  2:792092/1‑36 (MQ=255)
                           aGCGTCCCACCGCCTATGCGTTGGCTGCACTGTTCa          >  2:1448911/1‑36 (MQ=255)
                           aGCGTCCCACCGCCTATGCGTTGGCTGCACTGTTCa          >  1:1076344/1‑36 (MQ=255)
                            gCGCCCCCCCGCCTATGCGTTGGCTGCACTGTTCAt         <  2:3147252/36‑1 (MQ=37)
                            ccctCCCCCCGCCTATGCGTTGGCTGCACTGTTCAt         <  1:1134767/33‑1 (MQ=37)
                             ccccccTCCGCCTATGCGTTGGCTGCACTGTTCAtg        <  2:3542411/33‑1 (MQ=37)
                              gTCCCACCGCCTATGCGTTGGCTGCACTGTTCAtgc       >  1:2677676/1‑36 (MQ=255)
                              ctCCCCCCGCCTGTGCGTTGGCTGCACTGTTCAtgc       <  1:2626317/35‑1 (MQ=25)
                              cccccCCCGCCTATGCGTTGGCTGCACTGTTCAtgc       <  1:1749201/34‑1 (MQ=38)
                               ttccACCGCCTATGCGTTGGCTGCACTGTTCAtgct      <  1:1426411/34‑1 (MQ=255)
                               tCCCACCGCCTATGCGTTGGCTGCACTGTTCAtgct      >  1:2448728/1‑36 (MQ=255)
                               tCCCACCGCCTATGCGTTGGCTGCACTGTTCAtgct      >  2:2317942/1‑36 (MQ=255)
                               ccccCCCGCCTATGCGTTGGCTGCACTGTTCAtgct      <  1:2542861/35‑1 (MQ=255)
                               ccccCCCGCCTATGCGTTGGCTGCACTGTTCAtgct      <  1:2792320/35‑1 (MQ=255)
                                cccACCGCCTATGCGTTGGCTGCACTGTTCAtgctg     <  2:1094527/36‑1 (MQ=255)
                                 ccAGCGCGTATGTGTTGGCTGGACTGTTCAtgctgt    <  1:3288616/36‑1 (MQ=16)
                                   aCCGCCTATGCGTTGGCTGCACTGTTCAtgctgttg  >  2:3548671/1‑36 (MQ=255)
                                   aCCGCCTATGCGTTGGCTGCACTGTTCAtgctgttg  >  2:2069439/1‑36 (MQ=255)
                                   |                                   
TAACCGTGGCGTGGGATGCCCCTCGGCAGCGTCCCACCGCCTATGCGTTGGCTGCACTGTTCATGCTGTTG  >  REL606/1029210‑1029280

Base quality scores:  ATCG  < 3 ≤  ATCG  < 5 ≤  ATCG  < 10 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG