New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 547699NA (NA)52 (0.940) 27/70 0.7 NA noncoding (1/768 nt) IS1 repeat region
?REL606 555924 = NA (NA)coding (1209/2346 nt) ECB_00513 conserved hypothetical protein

TGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATAC  >  REL606/555899‑555948
                         |                        
tGCCATCCGATAAGGTTGTTAGCTTCAAACACACAt                >  2:2050204/1‑36 (MQ=1)
         aTAAGGTTGTTAGCTTCAAACGCGCATCAGCTCCaa       >  2:51267/1‑36 (MQ=1)
              gttgttAGCTTCAAACGCGCATCACGTGCAccacac  >  1:3655730/1‑36 (MQ=1)
                         |                        
TGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATAC  >  REL606/555899‑555948

Base quality scores:  ATCG  < 3 ≤  ATCG  < 4 ≤  ATCG  < 10 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG