Predicted mutation
evidence seq id position mutation annotation gene description
MC JC REL606 3,289,962 Δ16 bp coding (96‑111/4554 nt) gltB → glutamate synthase, large subunit

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3289962 3289977 16 49 [0] [0] 49 gltB glutamate synthase, large subunit

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 32899610 (0.000)48 (0.870) 34/70 0.2 100% coding (95/4554 nt) gltB glutamate synthase, large subunit
?REL606 3289978 = 0 (0.000)coding (112/4554 nt) gltB glutamate synthase, large subunit

GGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATAT...................................  >  REL606/3289927‑3289961
...................................CTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGC  >  REL606/3289978‑3290012
                                                                      
GGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATC                                    <  2:396819/36‑1 (MQ=255)
GGGTTCCCGCAGAGCCTGAGGGAGGTTCACGATATC                                    >  2:1397566/1‑36 (MQ=255)
  GTTCCCGCAGAGCCTGGGGGAGGTTCACGATATCTT                                  >  1:3327311/1‑36 (MQ=255)
     CCCGCAGAGCCTGGGGGAGGTTCACGATATCTTGAG                               <  1:321637/36‑1 (MQ=38)
      CCGCAGAGCCTGGGGGAGGTTCACGATATCTTGAGA                              >  1:728798/1‑36 (MQ=38)
      CCGCAGAGCCTGGGGGAGGTTCACGATATCTTGAGA                              >  1:2519051/1‑36 (MQ=38)
      CCGCAGAGCCTGGGGGAGGTTCACGATATCTTGAGA                              <  1:2435189/36‑1 (MQ=38)
      CCGCAGAGCCTGGGGGAGGTTCACGATATCTTGAGA                              <  1:1435538/36‑1 (MQ=38)
       CGCAGAGCCTGGGGGAGGTTCACGATATCTTGAGAG                             >  2:1590985/1‑36 (MQ=38)
       CGCAGAGCCTGGGGGAGGTTCACGATATCTTGAGAG                             >  2:733878/1‑36 (MQ=38)
        GCAGAGCCTGGGGGAGGTTCACGATATCTTGAGAGG                            >  1:2113304/1‑36 (MQ=38)
        GCAGAGCCTGGGGGAGGTTCACGATATCTTGAGAGG                            >  2:1172988/1‑36 (MQ=38)
         CAGAGCCTGGGGGAGGTTCACGATATCTTGAGAGGG                           >  2:1733057/1‑36 (MQ=38)
         CAGAGCCTGGGGGAGGTTCACGATATCTTGAGAGGG                           >  2:3484865/1‑36 (MQ=38)
            AGCCTGGGGGAGGTTCACGATATCTTGAGAGGGATA                        >  2:3361430/1‑36 (MQ=255)
              CCTGGGGGAGGTTCACGATATCTTGAGAGGTATAAC                      >  1:2719396/1‑36 (MQ=255)
              CCTGGGGGAGGTTCACGATATCTTGAGAGGGATAAC                      <  1:2617914/36‑1 (MQ=255)
              CCTGGGGGAGGTTCACGATATCTTGAGAGGGATAAC                      <  2:770294/36‑1 (MQ=255)
               CTGGGGGGGGTTCACGATATCTTGAGAGGGATAACT                     <  2:2825810/36‑1 (MQ=255)
               CTGGGGGAGGTTCACGATATCTTGAGAGGGTTAACT                     >  2:188883/1‑36 (MQ=255)
               CTGGGGGAGGTTCACGATATCTTGAGAGGGATAACT                     >  1:3070297/1‑36 (MQ=255)
                 GGGGGAGGTTCACGATATCTTGAGAGGGATAACTGT                   >  1:925597/1‑36 (MQ=255)
                 GGGGGAGGTTCACGATATCTTGAGAGGGATAACTGT                   >  1:1583709/1‑36 (MQ=255)
                 GGGGGAGGTTCACGATATCTTGAGAGGGATAACTGT                   <  1:1678757/36‑1 (MQ=255)
                  GGGGAGGTTCACGATATCTTGAGAGGGATAACTGTG                  >  1:3231936/1‑36 (MQ=255)
                   GGGAGGTTCACGATATCTTGAGAGGGATAACTGTGG                 >  2:3528206/1‑36 (MQ=255)
                   GGGAGGTTCACGATATCTTGAGAGGGATAACTGTGG                 <  2:1066956/36‑1 (MQ=255)
                    GGAGGTTCACGATATCTTGAGAGGGATAACTGTGGT                <  2:2609563/36‑1 (MQ=255)
                    GGAGGTTCACGATATCTTGAGAGGGATAACTGTGGT                <  1:500979/36‑1 (MQ=255)
                     GAGGTTCACGATATCTTGAGAGGGATAACTGTGGTT               <  1:3537557/36‑1 (MQ=255)
                     GAGGTTCACGATATCTTGAGAGGGATAACTGTGGTT               <  2:2547926/36‑1 (MQ=255)
                     GAGGTTCACGATATCTTGAGAGGGATAACTGTGGTT               >  2:1236095/1‑36 (MQ=255)
                     GAGATTCACGATATCTTGAGAGGGATAACTGTGGTT               <  2:310644/36‑1 (MQ=255)
                      AGGTTCACGATATCTTGAGAGGGATAACTGTGGTTT              >  1:280225/1‑36 (MQ=255)
                      AGGTTCACGATATCTTGAGAGGGATAACTGTGGTTT              <  1:2623833/36‑1 (MQ=255)
                      AGGTTCACGATATCTTGAGAGGGATAACTGTGGTTT              <  2:1935515/36‑1 (MQ=255)
                       GGTTCACGATATCTTGAGAGGGATAACTGTGGTTTC             <  2:968407/36‑1 (MQ=255)
                        GTTCACGATATCTTGAGAGGGATAACTGTGGTTTCG            <  1:1818014/36‑1 (MQ=255)
                        GTTCACGATATCTTGAGAGGGATAACTGTGGTTTCG            >  1:3566879/1‑36 (MQ=255)
                          TCACGATATCTTGAGAGGGATAACTGTGGTTTCGGC          <  2:3104465/36‑1 (MQ=255)
                           CACGATATCTTGAGAGGGATAACTGTGGTTTTGGCC         >  1:2533717/1‑36 (MQ=255)
                             CGATATCTTGAGAGGGATAACTGTGGTTTCGGCCTt       >  1:2887498/1‑35 (MQ=255)
                             CGATATCTTGAGAGGGATAACTGTGGTTTCGGCCTG       <  2:3331461/36‑1 (MQ=255)
                             CGATATCTTGAGAGGGATAACTGTGGTTTCGGCCTG       >  2:2110025/1‑36 (MQ=255)
                             CGATATCTTGAGAGGGATAACTGTGGTTTCGGCCTG       >  1:1604243/1‑36 (MQ=255)
                                 ATCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCG   <  1:3025852/36‑1 (MQ=255)
                                  TCTTGAGAGGGATAACTGTGGTTTCGGCCTGTTCGC  >  1:2174694/1‑36 (MQ=255)
                                  TCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGC  <  2:3722370/36‑1 (MQ=255)
                                                                      
GGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATAT...................................  >  REL606/3289927‑3289961
...................................CTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGC  >  REL606/3289978‑3290012

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG