Predicted mutation
evidence seq id position mutation annotation gene description
RA REL606 3,200,643 C→A intergenic (+11/‑245) tdcR → / → yhaB DNA‑binding transcriptional activator/hypothetical protein

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,200,6430C→A100.0% 162.2 51intergenic (+11/‑245)tdcR/yhaBDNA‑binding transcriptional activator/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (35/16):  ref base (0/0):  total (35/16)

GAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCATTTTGTGTTGAG  >  REL606/3200612‑3200675
                               |                                
gAATGCAATCGTTTTCCATAAATTCTTCTCCACTCa                              >  2:1729492/1‑36 (MQ=255)
 aaTGCAATCGTTTTCCATAAATTCTTCTCCACTCAt                             >  2:544789/1‑36 (MQ=255)
 aaTGCAATCGTTTTCCATAAATTCTTCTCCACTCAt                             <  2:2660281/36‑1 (MQ=255)
  aTGCAATCGTTTTCCATAAATTCTTCTCCACTCATa                            >  2:2679474/1‑36 (MQ=255)
   tGCAATCGTTTTCCATAAATTCTTCTCCACTCATAg                           >  1:2349925/1‑36 (MQ=255)
   tGCAATCGTTTTCCATAAATACTTCTCCACTCATAg                           >  2:2617071/1‑36 (MQ=37)
    gCAATCGTTTTCCATAAATTCTTCTCCACTCATAgg                          >  2:2298737/1‑36 (MQ=255)
    gCAATCGTTTTCCATAAATCCTTCTCCATTCATAgg                          >  1:1947174/1‑36 (MQ=25)
     cAATCGTTTTCCATAAATTCTTCTCCACTCATAGGc                         >  1:1110409/1‑36 (MQ=255)
      aaTCGTTTTCCATAAATTCTTCTCCACTCATAGGcg                        >  2:1828698/1‑36 (MQ=255)
      aaTCGTTTTCCATAAATTCTTCTCCACTCATAGGcg                        >  2:1158813/1‑36 (MQ=255)
      aaTCGTTTTCCATAAATTCTTCTCCACTCATAAGcg                        >  2:2156970/1‑36 (MQ=37)
      aaTCGTTTTCCATAAATTCTTCACCACTCATAGGcg                        >  1:1672331/1‑36 (MQ=37)
       aTCGTTTTCCATAAATTCTTCTCCACTCATAGGcga                       >  1:1360165/1‑36 (MQ=255)
       aTCGTTTTCCATAAATTCTTCTCCACTCATAGGcga                       <  2:1046176/36‑1 (MQ=255)
       aTCGTTTTCCATAAATTCTTCTCCACTCATACGcnc                       >  1:677769/1‑34 (MQ=25)
        ttgTTTTCCATATATTCTTCTCCACTCATAGGcgac                      <  1:847612/34‑1 (MQ=255)
         cGTTTTCCATAAATTCTTCTCCACTCATAGGcgacg                     >  1:2374060/1‑36 (MQ=255)
         cGTTTTCCATAAATTCTTCTCCACTCATAGGcgacg                     <  1:3569408/36‑1 (MQ=255)
         cGTTTTCCATAAATTCTTCTCCACTCATAGGcgacg                     >  2:1653592/1‑36 (MQ=255)
           ttttCCATAAATTCTTCTCCACTCATAGGCGACGaa                   >  2:1524655/1‑36 (MQ=255)
           ttttCCATAAATTCTTCTCCACTCATAGGCGACGaa                   <  2:1584249/36‑1 (MQ=255)
            tttCCATAAATTCTTCTCCACTCATAGGCGACGAAt                  <  1:3687787/36‑1 (MQ=255)
             ttCCATAAATTCTTCTCCACTCATAGGCGACGAATa                 >  1:64283/1‑36 (MQ=255)
             ttCCATAAATTCTTCTCCACTCATAGGCGACGAATa                 <  1:678329/36‑1 (MQ=255)
              tCCATAAATTCTTCTCCACTCATAGGCGACGAATAg                >  2:3079996/1‑36 (MQ=255)
                 aTAAATTCTTCTCCACTCATAGGCGACGAATAGCAt             <  1:3210520/36‑1 (MQ=255)
                  tAAATTCTTCTCCACTCATAGGCGACGAATAGCAtt            <  2:1292068/36‑1 (MQ=255)
                   aaaTACTTCTCCACTCATAGGCGACGAATAGCAttt           <  1:2880302/36‑1 (MQ=37)
                    aaTTCTTCTCCACTCATAGGCGACGAATAGCAtttt          >  1:776190/1‑36 (MQ=255)
                    aaTTCTTCTCCACTCATAGGCGACGAATAGCAtttt          >  2:2076779/1‑36 (MQ=255)
                     aTTCTTCTCCACTCATAGGCGACGAATAGCATTTtg         >  1:2303404/1‑36 (MQ=255)
                     aTTCTTCTCCACTCATAGGCGACGAATAGCATTTtg         >  2:1389070/1‑36 (MQ=255)
                      ttcttcTCCACTCATAGGCGACGAATAGCATTTtgt        <  1:2900158/36‑1 (MQ=255)
                      ttcttcTCCACTCATAGGCGACGAATAGCATTTtgt        >  1:2729012/1‑36 (MQ=255)
                      ttcttcTCCACTCATAGGCGACGAATAGCATTTtgt        <  1:1316069/36‑1 (MQ=255)
                       tcttctCCACTCATAGGCGACGAATAGCCTTTtgtg       >  2:1449185/1‑36 (MQ=37)
                       tcttctCCACTCATAGGCGACGAATAGCATTTtgtg       >  1:2351717/1‑36 (MQ=255)
                       tcttctCCACTCATAGGCGACGAATAGCATTTtgtg       <  1:379653/36‑1 (MQ=255)
                       tcttctCCACTCATAGGCGACGAATAGCATTTtgtg       >  2:1226739/1‑36 (MQ=255)
                        cttctCCACTCATAGGCGACGAATAGCATTTTgtgt      <  1:1893824/36‑1 (MQ=255)
                        cttctCCACTCATAGGCGACGAATAGCATTTTgtgt      >  1:2902369/1‑36 (MQ=255)
                        cttatCCACTCATAGGCGAAGAATAGCATTTTgtgt      >  1:14388/1‑36 (MQ=25)
                         ttctCCACTCATAGGCGACGAATAGCATTTTGTGtt     >  2:172630/1‑36 (MQ=255)
                         ttctCCACTCATAGGCGACGAATAGAATTTTGTGtt     >  1:254762/1‑36 (MQ=37)
                          tctcCACTCATAGGCGACGACTAGCATTTTGTGTTg    >  2:3008134/1‑36 (MQ=38)
                           ctcCACTCATAGGCGACGAATAGCATTTTGTGttca   >  1:273122/1‑34 (MQ=38)
                           ctcCACTCATAGGCGACGAATAGCATTTTGTGTTGa   <  1:3669450/36‑1 (MQ=255)
                           ctcCACTCATAGGCGACGAATAGCATTTTGTGTTGa   >  1:1966418/1‑36 (MQ=255)
                            tcCACTCATAGGCGACGAATAGCATTTTGTGTTGAg  <  2:2144450/36‑1 (MQ=255)
                            tcCACTCATAGGCGACGAATAGCATTTTGTGTTGAg  >  1:3260662/1‑36 (MQ=255)
                               |                                
GAATGCAATCGTTTTCCATAAATTCTTCTCCCCTCATAGGCGACGAATAGCATTTTGTGTTGAG  >  REL606/3200612‑3200675

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG