New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3651091 =NA (NA)68 (1.230) 34/70 0.2 NA noncoding (1/1443 nt) IS150 repeat region
?REL606 = 3741531 NA (NA)noncoding (435/768 nt) IS1 repeat region

CATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATG  >  REL606/3651056‑3651123
                                   |                                
cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                  <  1:1687411/36‑1 (MQ=255)
cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                  >  1:3464622/1‑36 (MQ=255)
 aTTGCCAGCCTCCTGTGTTGATTTCCAACGAGTATg                                 <  2:736734/36‑1 (MQ=255)
 aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATg                                 >  1:1099510/1‑36 (MQ=255)
 aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATg                                 <  2:3205111/36‑1 (MQ=255)
     ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt                             >  1:728188/1‑36 (MQ=255)
     ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt                             >  1:511609/1‑36 (MQ=255)
     ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt                             <  1:421149/36‑1 (MQ=255)
        gCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCa                          <  2:1084659/36‑1 (MQ=255)
        gCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCa                          >  1:3624682/1‑36 (MQ=255)
          ctcctGTGTTGATTTCCAACGAGTATGTACTGCAcc                        <  1:3552868/36‑1 (MQ=255)
           tcctGTGTTGATTTCCAACAAGTATGTACTGCAccc                       >  1:2808013/1‑36 (MQ=255)
            tctGTGTTGATTTCCAACGAGTATGTACTGCACCCa                      >  1:1212379/2‑36 (MQ=255)
            cctGTGTTGATTTCCAACGAGTATGTACTGCACCCa                      >  1:3456018/1‑36 (MQ=255)
             ctGTGTTGATTTCCAACGAGTATGTACTGCACCCAt                     >  1:14735/1‑36 (MQ=255)
               gtgtTGATTTCCAATGAGTTTGTACTGCACCCactc                   >  1:2604279/1‑33 (MQ=25)
               gtgtTGATTTCCAACGAGTATGTACTGCACCCAttt                   >  1:534021/1‑36 (MQ=255)
                tgtTGATTTCCAGCGAGTATGTACTGCACCCAtttt                  <  1:988650/36‑1 (MQ=255)
                tgtTGATTTCCAACGAGTATGTACTGCACCCAtttt                  <  2:539508/36‑1 (MQ=255)
                 gtTGATTTCCAACGAGTATGTACTGCACCCATTttg                 >  2:8909/1‑36 (MQ=255)
                 gtTGATTTCCAACGAGTATGTACTGCACCCATTttg                 <  2:863181/36‑1 (MQ=255)
                 gtTGATTTCCAACGAGTATGTACTGCACCCATTttg                 >  2:1732789/1‑36 (MQ=255)
                  ttGATTTCCAACGAGTATGTACTGCACCCATTttgt                <  2:1259862/36‑1 (MQ=255)
                  ttGATTTCCAACGAGTATGTACTGCACCCATTttgt                >  1:2117482/1‑36 (MQ=255)
                   tGATTTCCAACGAGTATGTACTGCACCCATTttgtt               >  2:2624103/1‑36 (MQ=255)
                    gATTTCCAACGAGTATGTACTGCACCCATTttgttg              >  1:1824591/1‑36 (MQ=255)
                    gATTTCCAACGAGTATGTACTGCACCCATTttgttg              >  1:1656523/1‑36 (MQ=255)
                     aTTTCCAACGAGTATGTACTGCACCCATTTTGTTgg             >  1:2551953/1‑36 (MQ=255)
                     aTTTCCAACGAGTATGTACTGCACCCATTTTGTTgg             <  1:830107/36‑1 (MQ=255)
                     aTTTCCAACGAGTATGTACTGCACCCATTTTGTTgg             <  1:1457098/36‑1 (MQ=255)
                     aTTTCCAACGAGTATGTACTGCACCCATTTTGTTgg             <  1:3721491/36‑1 (MQ=255)
                     aTTTCCAACGAGTATGTACTGCACCCATTTTGTTgg             >  1:1696131/1‑36 (MQ=255)
                       ttCCAACGAGTATGTACTGCACCCATTTTGTTGGAc           >  2:3187703/1‑36 (MQ=255)
                        tCCAACGAGTATGTACTGCACCCATTTTGTTGGACg          >  1:2219086/1‑36 (MQ=255)
                        tCCAACGAGTAAGTACTGCACCCATTTTGTTGGACg          <  1:2371980/36‑1 (MQ=255)
                           aaCGAGTATGTACTGCACCCCTTTTGTTGGACGATg       >  1:386779/1‑36 (MQ=255)
                           aaCGAGTATGTACTGCACCCATTTTGTTGGACGATg       >  1:1226625/1‑36 (MQ=255)
                           aaCGAGTATGTACTGCACCCATTTTGTTGGACGATg       >  1:3163188/1‑36 (MQ=255)
                           aaCGAGTATGTACTGCACCCATTTTGTTGGACGATg       >  2:1536647/1‑36 (MQ=255)
                           aaCGAGTATGTACTGCACCCATTTTGTTGGACGATg       >  1:2066876/1‑36 (MQ=255)
                            aCGAGTATGTACTGCACCCATTTTGTTGGACGATGa      >  1:92210/1‑36 (MQ=255)
                             cGAGTATGTACTGCTCCCATTTTGTTGGACGATGaa     <  1:3244266/36‑1 (MQ=255)
                             cGAGTATGTACTGCACCCATTTTGTTGGACGATgta     >  1:1313843/1‑34 (MQ=255)
                             cGAGTATGTACTGCACCCATTTTGTTGGACGATGaa     <  2:2220606/36‑1 (MQ=255)
                             cGAGTATGTACTGCACCCATTTTGTTGGACGATGaa     <  2:2784310/36‑1 (MQ=255)
                              gAGTATGTACTGCACCCATTTTGTTGGACGATGaaa    >  1:786603/1‑36 (MQ=255)
                              gAGTATGTACTGCACCCATTTTGTTGGACGATGaaa    >  1:777365/1‑36 (MQ=255)
                               aGTATGTACTGCACCCATTTTGTTGGACGATGAAAt   >  1:2792932/1‑36 (MQ=40)
                               aGTATGTACTGCACCCATTTCGTTGGACGATGAAAt   >  2:3026405/1‑36 (MQ=255)
                                gTATGTACTGCACCCATTTTGTTGGACGATGAAATg  <  1:2940576/36‑1 (MQ=38)
                                gTATGTACTGCACCCATTTTGTTGGACGATGAAATg  <  1:2964545/36‑1 (MQ=38)
                                   |                                
CATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATG  >  REL606/3651056‑3651123

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 19 ≤  ATCG  < 29 ≤  ATCG  < 32 ≤  ATCG