Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp intergenic (‑14/‑514) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16972 =0 (0.070)62 (1.130) 23/70 1.1 100% intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 588495 = NA (NA)noncoding (1/1977 nt) IS150 repeat region
* ? REL606 = 169740 (0.000)52 (1.000) 27/66 0.6 100% intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 590471 NA (NA)noncoding (1977/1977 nt) IS150 repeat region

Only 100 of 115 total aligned reads displayed.

ACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTAT  >  REL606/16939‑17008
                                   |                                  
catttcatcgtccaacaaaatgggtgcagtacaGGt                                    <  2:3552195‑M1/3‑1 (MQ=255)
catttcatcgtccaacaaaatgggtgcagtacaGGt                                    >  2:3234726‑M1/34‑36 (MQ=255)
aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGt                                    >  1:59974/1‑36 (MQ=255)
aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGt                                    <  2:2126267/36‑1 (MQ=255)
aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGt                                    >  1:1634997/1‑36 (MQ=255)
 ctctACATGTGTTCAGCATATAGGGGGCCTCGGGTt                                   <  1:2317586‑M1/36‑2 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaGGtt                                   >  1:1082745‑M1/33‑36 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaGGtt                                   <  2:1584522‑M1/4‑1 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaGGtt                                   >  1:3697993‑M1/33‑36 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaGGtt                                   >  1:3084830‑M1/33‑36 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaGGtt                                   >  1:2444431‑M1/33‑36 (MQ=255)
 atatcatcgtccaacaaaatgggtgcagtacaGGtt                                   >  1:2647117‑M1/33‑36 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacaGGTTg                                  <  2:1035457‑M1/5‑1 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacaGGTTg                                  >  2:167270‑M1/32‑36 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacaGGTTg                                  >  1:2878251‑M1/32‑36 (MQ=255)
   ctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgt                                 <  2:1878643‑M1/36‑4 (MQ=255)
    tcatcgtccaacaaaatgggttcagtacaGGTTGAt                                >  2:3110478‑M1/30‑36 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                                >  2:3420916‑M1/30‑36 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                                >  1:3454125‑M1/30‑36 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                                <  2:1208814‑M1/7‑1 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                                >  1:1225224‑M1/30‑36 (MQ=255)
    tACATGTGTTCAGCATATAGGGGGCCTCGGGTtgta                                >  1:3118647‑M1/1‑32 (MQ=255)
     catcgtccaacaaaatgggtgcagtacaGGTTGATa                               <  1:1182391‑M1/8‑1 (MQ=255)
     catcgtccaacaaaatgggtgcagtacaGGTTGATa                               <  2:125881‑M1/8‑1 (MQ=255)
     aCATGTGTTCAGCATGTAGGGGGCCTCGGGTtgtac                               <  2:2028095‑M1/36‑6 (MQ=255)
     aCATGTGTTCAGCATATAGGGGGCCTCGGGTtgtac                               <  2:3186121‑M1/36‑6 (MQ=255)
      cATGTGTTCAGCATATAGGGGGCCTCGGGTtgtact                              <  2:2876993‑M1/36‑7 (MQ=255)
      cATGTGTTCAGCATATAGGGGGCCTCGGGTtgtact                              <  1:2732254‑M1/36‑7 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaGGTTGATAg                              >  1:2521671‑M1/28‑36 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaGGTTGATAg                              >  2:2422059‑M1/28‑36 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaGGTTGATAg                              >  1:984453‑M1/28‑36 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaGGTTGATAg                              <  2:1901311‑M1/9‑1 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaGGTTGATAg                              >  2:735209‑M1/28‑36 (MQ=255)
       aTGTGTTCAGCATATAGGGGGCCTCGGGTtgtactg                             >  2:2951566‑M1/1‑29 (MQ=255)
       aTGTGTTCAGCATATAGGGGGCCTCGGGTtgtactg                             >  1:1214723‑M1/1‑29 (MQ=255)
        tgtgTTCAGCATATAGGGGGCCTCGGGTtgtactga                            <  1:1058422‑M1/36‑9 (MQ=255)
        tgtgTTCAGCATATAGGGGGCCTCGGGTtgtactga                            <  2:464831‑M1/36‑9 (MQ=255)
        cgtccaacaaaatgggtgcagtacaGGTTGATAGTa                            <  2:2000390‑M1/11‑1 (MQ=255)
        cgtccaacaaaatgggtgcagtacaGGTTGATAGTa                            >  1:2844169‑M1/26‑36 (MQ=255)
         gtgtTCAGCATATAGGGGGCCTCGGGTtgtactgac                           <  1:2915708‑M1/36‑10 (MQ=255)
         gtccaacaaaatgggtgcagtacaGGTTGATAGTaa                           >  2:2533140‑M1/25‑36 (MQ=255)
          tccaacaaaatgggtgcagtacaGGTTGATAGTaaa                          >  1:1969473‑M1/24‑36 (MQ=255)
           ccaacaaaatgggtgcagtacaGGTTGATAGTaaaa                         >  2:2529925‑M1/23‑36 (MQ=255)
            ttCTGCATATAGGGGGCCTCGGGTtgtactgaccct                        <  2:1587936‑M1/36‑13 (MQ=255)
            ttCAGCATATAGGGGGCCTCGGGTtgtactgacccc                        <  1:2972812‑M1/36‑13 (MQ=255)
            ttCAGCATATAGGGGGCCTCGGGTtgtactgacccc                        <  2:3130401‑M1/36‑13 (MQ=255)
            caacaaaatgggtgcagtacaGGTTGATAGTAAAat                        >  1:1495778‑M1/22‑36 (MQ=255)
            caacaaaatgggtgcagtacaGGTTGATAGTAAAat                        >  1:3322049‑M1/22‑36 (MQ=255)
            caacaaaatgggtgcagtacaGGTTGATAGTAAAat                        <  2:1551563‑M1/15‑1 (MQ=255)
             tCAGCATATAGGGGGCCTCGGGTtgtactgacccca                       >  1:1527195‑M1/1‑23 (MQ=255)
             tCAGCATATAGGGGGCCTCGGGTtgtactgacccca                       <  1:1832588‑M1/36‑14 (MQ=255)
             tCAGCATATAGGGGGCCTCGGGTtgtactgacccca                       <  2:594939‑M1/36‑14 (MQ=255)
             aacaaaatgggtgcagtacaGGTTGATAGTAAAata                       >  1:125870‑M1/21‑36 (MQ=255)
             aacaaaatgggtgcagtacaGGTTGATAGTAAAata                       <  1:73612‑M1/16‑1 (MQ=255)
              cAGCATATAGGGGGCCTCGGGTtgtactgaccccaa                      >  1:97758‑M1/1‑22 (MQ=255)
              acaaaatgggtgcaatacaGGTTGATAGTAAAatat                      >  1:2257065‑M1/20‑36 (MQ=255)
                gCATATAGGGGGCCTCGGGTtgtactgaccccaaaa                    <  2:3674046‑M1/36‑17 (MQ=255)
                gCATATAGGGGGCCTCGGGTtgtactgaccccaaaa                    <  1:3646995‑M1/36‑17 (MQ=255)
                aaaatgggtgcagtacaGGTTGATAGTAAAATATCa                    >  1:1493817‑M1/18‑36 (MQ=255)
                aaaatgggtgcagtacaGGTTGATAGTAAAATATCa                    >  2:1218891‑M1/18‑36 (MQ=255)
                aaaatgggtgcagtacaGGTTGATAGTAAAATATCa                    <  2:3570569‑M1/19‑1 (MQ=255)
                aaaatgggtgcagtacaGGTTGATAGTAAAATATCa                    >  2:3210246‑M1/18‑36 (MQ=255)
                 cATATAGGGGGCCTCGGGTtgtactgaccccaaaaa                   >  1:1513629‑M1/1‑19 (MQ=255)
                  atatAGGGGGCCTCGGGTtgtactgaccccaaaaag                  <  2:2528263‑M1/36‑19 (MQ=255)
                  atatAGGGAGCCTCGGGTtgtactgaccccaaaaag                  <  1:2562359‑M1/36‑19 (MQ=255)
                  aatgggtgcagtacaGGTTGATAGTAAAATATCACt                  >  1:270010‑M1/16‑36 (MQ=255)
                   tataGGGGGCCTCGGGTtgtactgaccccaaaaagt                 <  1:2552035‑M1/36‑20 (MQ=255)
                   atgggtgcagtacaGGTTGATAGTAAAATATCACTc                 >  1:2469321‑M1/15‑36 (MQ=255)
                     taGGGGGCCTCGGGTtgtactgaccccaaaaagatg               >  1:3727708‑M1/1‑15 (MQ=255)
                     gggtgcagtacaGGTTGATAGTAAAATATTACTCgg               <  2:3338943‑M1/24‑1 (MQ=255)
                       gggggCCGCGGGTtgtactgaccccaaaaagttgga             <  2:1741574‑M1/36‑24 (MQ=255)
                         gcagtacaGGTTGATAGTAAAATATCTCTCGGGGCt           <  2:2338448‑M1/28‑1 (MQ=255)
                         gagccTCGGGTtgtactgaccccaaaaagttggaca           <  1:2249972‑M1/34‑26 (MQ=255)
                          ggCCTCGGGTtgtactgaccccaaaaagttggacag          <  1:3242481‑M1/36‑27 (MQ=255)
                          cagtacaGGTTGATAGTAAAATATCACTCGGGGCtt          >  1:1711134‑M1/8‑36 (MQ=255)
                          cagtacaGGTTGATAGTAAAATATCACTCGGGGCtt          >  2:1349384‑M1/8‑36 (MQ=255)
                           gtctcGGGTtgtactgaccccaaaaagttggacagt         <  1:2234748‑M1/34‑28 (MQ=255)
                            gtacaGGTTGATAGTAAAATATCACTCGGGGCtttt        >  1:857310‑M1/6‑36 (MQ=255)
                            gtacaGGTTGATAGTAAAATATCACTCGGGGCtttt        >  1:2447902‑M1/6‑36 (MQ=255)
                            ccTCGGGTtgtactgaccccaaaaagttggacagtt        <  1:3398436‑M1/36‑29 (MQ=255)
                            ccTCGGGTtgtactgaccccaaaaagttggacagtt        <  2:2411675‑M1/36‑29 (MQ=255)
                            ccTCGGGTtgtactgaccccaaaaagttggacagtc        <  2:3678198‑M1/36‑29 (MQ=255)
                             tacaGGTTGATAGTAAAATATCACTCGGGGCTTTtc       >  2:1016072‑M1/5‑36 (MQ=255)
                             cTCGGGTtgtactgaccccaaaaagttggacagtta       <  2:2614441‑M1/36‑30 (MQ=255)
                             cTCGGGTtgtactgaccccaaaaagttgaacagtta       >  2:814709‑M1/1‑7 (MQ=255)
                              tCGGGTtgtactgaccccaaaaagttggacagttaa      >  1:812306‑M1/1‑6 (MQ=255)
                              acaGGTTGATAGTAAAATATCACTCGGGGCTTTtct      >  1:922425‑M1/4‑36 (MQ=255)
                               caGGTTGATAGTAAAATATCACTCGGGGCTTTtctc     <  1:2171522‑M1/34‑1 (MQ=255)
                               cGGGTtgtactgaccccaaaaagttggacagttaaa     <  2:1891876‑M1/36‑32 (MQ=255)
                               cGGGTtgtactgaccccaaaaagttggacagttaaa     <  1:466506‑M1/36‑32 (MQ=255)
                                gggTtgtactgaccccaaaaagttggacagttaaac    >  1:2245043‑M1/1‑4 (MQ=255)
                                gggTtgtactgaccccaaaaagttggacagttaaac    >  2:1319761‑M1/1‑4 (MQ=255)
                                aGGTTGATAGTAAAATATCACTCGGGGCTTTTctct    >  1:50335‑M1/2‑36 (MQ=255)
                                aGGTTGATAGTAAAATATCACTCGGGGCTTTTctct    >  2:208611‑M1/2‑36 (MQ=255)
                                 ggTtgtactgaccccaaaaagttggacagttaaaca   <  2:31727‑M1/36‑34 (MQ=255)
                                 ggTtgtactgaccccaaaaagttggacagttaaaca   >  2:1254202‑M1/1‑3 (MQ=255)
                                  gTtttactgaccccaaaaagttggacagttaaacac  <  2:2144342‑M1/36‑35 (MQ=255)
                                  gTtgtactgaccccaaaaagttggacagttaaacac  >  2:1724725‑M1/1‑2 (MQ=255)
                                  gTtgtactgaccccaaaaagttggacagttaaacac  <  2:3461882‑M1/36‑35 (MQ=255)
                                  gTtgtactgaccccaaaaagttggacagttaaacac  >  1:1315193‑M1/1‑2 (MQ=255)
                                   |                                  
ACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTAT  >  REL606/16939‑17008

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 21 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG