Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp coding (573‑575/1041 nt) ynjI ← predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1821525 =1 (0.060)59 (1.140) 39/66 0.1 98.3% coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 18215270 (0.110)57 (1.070) 27/68 0.6 100% coding (573/1041 nt) ynjI predicted inner membrane protein
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

TGTGCCTTAATGGAGCATTTTCTTTCTGGCGACCATG...................................  <  REL606/1821559‑1821525
...................................TGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  <  REL606/2775877‑2775841
                                                                        
  TGCCTTAATGGAGCATTTTCTTTCTGGCGACCATGT                                    <  1:477/36‑1 (MQ=1)
  TGCCTTAATGGAGCATTTTCTTTCTGGCGACCATGT                                    <  2:2445620/36‑1 (MQ=1)
  TGCCTTAATGGAGCATTTTCTTTCTGGCGACCATGT                                    <  2:384198/36‑1 (MQ=1)
  TGCCTTAATGGAGCATTTTCTTTCTGGCGACCATGT                                    >  2:3471468/1‑36 (MQ=1)
   GCCTTAATGGAGCATTTTCTTTCTGGCGACCATGTA                                   <  2:2350797/36‑1 (MQ=1)
   GCCTTAATGGAGCATTTTCTTTCTGGCGACCATGTA                                   <  1:2460269/36‑1 (MQ=1)
   GCCTTAATGGAGCATTTTCTTTCTGGCGACCATGTA                                   <  2:1410200/36‑1 (MQ=1)
    CCTTAATGGAGCATTTTCTTTCTGGCGACCATGTAC                                  <  1:719203/36‑1 (MQ=1)
     CTTAATGGAGCATTTTCTTTCTGGCGACCATGTACT                                 >  2:3630190/1‑36 (MQ=1)
      TTAATGGAGCATTTTCTTTCTGGCGACCATGTACTG                                >  2:3609958/1‑36 (MQ=1)
       TAATGGAGCATTTTCTTTCTGGCGACCATGTACTGC                               >  1:621987/1‑36 (MQ=1)
       TAATGGAGCATTTTCTTTCTGGCGACCATGTACTGC                               >  2:1628713/1‑36 (MQ=1)
       TAATGGAGCATTTTCTTTCTGGCGACCATGTACTGC                               <  2:2943619/36‑1 (MQ=1)
        AATGGAGCATTTTCTTTCTGGCGACCATGTACTGCA                              <  2:3655038/36‑1 (MQ=1)
           GGAGCATTTTCTTTCTGGCGACCATGTACTGCACCC                           <  1:1211114/36‑1 (MQ=1)
           GGAGCATTTTCTTTCTGGCGACCATGTACTGCACCC                           >  1:3085215/1‑36 (MQ=1)
            GAGCATTTTCTTTCTGGCGACCATGTACTGCACCCA                          <  2:2303540/36‑1 (MQ=1)
            GAGCATTTTCTTTCTGGCGACCATGTACTGCACCCA                          <  1:509459/36‑1 (MQ=1)
             AGCATTTTCTTTCTGGCGACCATGTACTGCACCCAT                         <  1:3381572/36‑1 (MQ=32)
             AGCATTTTCTTTCTGGCGACCATGTACTGCACCCAT                         >  1:1068183/1‑36 (MQ=32)
              GCATTTTCTTTCTGGCGACCATGTACTGCACCCATT                        <  1:1153850/36‑1 (MQ=35)
              GCATTTTCTTTCTGGCGACCATGTACTGCACCCATT                        <  1:1345479/36‑1 (MQ=35)
               CATTTTCTTTCTGGCGACCATGTACTGCACCCATTT                       <  2:3367653/36‑1 (MQ=38)
               CATTTTCTTTCTGGCGACCATGTACTGCACCCATTT                       >  2:1265558/1‑36 (MQ=38)
                ATTTTCTTTCTGGCGACCATGTACTGCACCCATTTT                      <  2:3255749/36‑1 (MQ=40)
                ATTTTCTTTCTGGCGACCATGTACTGCACCCATTTT                      >  2:3461338/1‑36 (MQ=40)
                ATTTTCTTTCTGGCGACCATGTACTGCACCCATTTT                      >  2:862896/1‑36 (MQ=40)
                 TTTTCTTTCTGGCGACCATGTACTGCACCCATTTTG                     <  1:943853/36‑1 (MQ=255)
                 TTTTCTTTCTGGCGACCATGTACTGCACCCATTTTG                     <  2:639754/36‑1 (MQ=255)
                 TTTTCTTTCTGGCGACCATGTACTGCACCCATTTTG                     <  2:1698915/36‑1 (MQ=255)
                   TTCTTTCTGGCGACCATGTACTGCACCCATTTTGTT                   >  2:454845/1‑36 (MQ=255)
                   TTCTTTCTGGCGACCATGTACTGCACCCATTTTGTT                   <  1:1771366/36‑1 (MQ=255)
                    TCTTTCTGGCGACCATGTACTGCACCCATTTTGTTG                  >  2:3439104/1‑36 (MQ=255)
                     CTTTCTGGCGACCATGTACTGCACCCATTTTGTTGG                 <  2:672536/36‑1 (MQ=40)
                      TTTCTGGCGACCATGTACTGCACCCATTCTGTTGGA                >  2:2796397/1‑36 (MQ=255)
                       TTCTGGCGACCATGTACTGCACCCATTTTGTTGGAC               >  1:3157173/1‑36 (MQ=35)
                        TCTGGCGACCATGTACTGCACCCATTTTGTTGGACG              >  2:747815/1‑36 (MQ=32)
                        TCTGGCGACCATGTACTGCACCCATTTTGTTGGACG              >  1:2329501/1‑36 (MQ=32)
                         CTGGCGACCATGTACTGCACCCATTTTGTTGGACGA             >  1:2388242/1‑36 (MQ=1)
                         CTGGCGACCATGTACTGCACCCATTTTGTTGGACGA             <  1:3340945/36‑1 (MQ=1)
                          TGGCGACCATGTACTGCACCCATTTTGTTGGACGAT            <  2:3554424/36‑1 (MQ=1)
                          TGGCGACCATGTACTGCACCCATTTTGTTGGACGAT            >  2:1940185/1‑36 (MQ=1)
                          TGGCGACCATGTACTGCACCCATTTTGTTGGACGAT            <  2:1560518/36‑1 (MQ=1)
                           GGCGACCATGTACTGCACCCATTTTGTTGGACGATG           >  1:231739/1‑36 (MQ=1)
                            gtGACCATGTACTGCACCCATTTTGTTGGACGATGA          <  1:2925509/34‑1 (MQ=1)
                            GCGACCATGTACTGCACCCATTTTGTTGGACGATGA          <  2:1882626/36‑1 (MQ=1)
                             CGACCATGTACTGCACCCATTTTGTTGGACGATGAA         <  2:3235400/36‑1 (MQ=1)
                             CGACCATGTACTGCACCCATTTTGTTGGACGATGAA         <  2:156332/36‑1 (MQ=1)
                              GACCATGTACTGCACCCATTTTGTTGGACGATGAAA        >  2:2106404/1‑36 (MQ=1)
                              GACCATGTACTGCACCCATTTTGTTGGACGATGAAA        >  2:1737896/1‑36 (MQ=1)
                              GACCATGTACTGCACCCAGTTTGTTGGACGATGAAA        <  1:699940/36‑1 (MQ=0)
                               ACCATGTACTGCACCCATTTTGTTGGACGATGAAAT       <  1:2647767/36‑1 (MQ=1)
                               ACCATGTACTGCACCCATTTTGTTGGACGATGAAAT       <  1:2314910/36‑1 (MQ=1)
                                 CATGTACTGCACCCATTTTGTTGGACGATGAAATGG     >  1:1726018/1‑36 (MQ=1)
                                 CATGTACTGCACCCATTTTGTTGGACGATGAAATGG     <  1:122046/36‑1 (MQ=1)
                                  ATGTACTGCACCCATTTTGTTGGACGATGAAATGGA    <  2:1633201/36‑1 (MQ=1)
                                  ATGTACTGCACCCATTTTGTTGGACGATGAAATGGA    <  1:190257/36‑1 (MQ=1)
                                  ATGTACTGCACCCATTTTGTTGGACGATGAAATGGA    >  2:88995/1‑36 (MQ=1)
                                  ATGTACGGCACCCATTTTGTTGGACGATGAAATGGA    <  1:1679255/36‑1 (MQ=0)
                                                                        
TGTGCCTTAATGGAGCATTTTCTTTCTGGCGACCATG...................................  <  REL606/1821559‑1821525
...................................TGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  <  REL606/2775877‑2775841

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 24 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG