<noautolink> <!-- Preferences start here * Set PAGETITLE = Barrick Lab :: Computational Protocols Preferences end here --> ---+!! Barrick Lab :: Computational Protocols ---++ Command line * [[ProtocolsUnixCommandsQuickReference][Unix Commands Quick Reference]] <br>Collection of useful Unix commands. * [[ProtocolsSSHPublicKeyAuthentication][SSH Public Key Authentication]] <br> How to set up login without typing password between Linux machines. * [[ProtocolsMassRename][Rename files via command line]] <br>How to use sed to rename multiple files in a single directory. * [[AllowDisconnection][Leave a command running on a remote machine after logging out]] <br>How to start a command in a ssh session, and leave it running after logging out of the current window. * [[UnzipAll][Mass File Extraction]] <br>Simple script for 'un-tar'ing and 'un-zip'ing all .tar.gz files in a single directory ---++ Next generation sequencing data analysis * [[ProtocolsSequenceRetrieval][GSAF Sequence Retrieval and Backup]] <br>Instructions for downloading and backing up data sent by UT GSAF. * [[ProtocolsFlexbarCommands][Flexbar Commands for Trimming Adapter Sequences]] <br>Command line tools for trimming adapter sequence from NGS reads. * [[ProtocolsRunningBreseqOnTACC][Running <i>breseq</i> on TACC]] * [[ProtocolsRNASeqDifferentialExpression][Analyzing RNA-Seq data]] <br>Analyzing RNA-Seq data for differential expression. ---++ Data Management * [[PubliclyArchivingData][Publicly Archiving Data]]<br>Uploading data and obtaining an accession number from GenBank, SRA, and Dryad databases. ---++ BEACON * [[BEACONTeleconferenceSetup][How to set up the BEACON teleconference in GDC7.808]]
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Topic revision: r6 - 2015-06-12 - JeffreyBarrick