Difference: ProtocolsRunningBreseqOnTACC (5 vs. 6)

Revision 62016-07-05 - DanielDeatherage

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META TOPICPARENT name="ProtocolList"

Running breseq on TACC

Installing breseq on stampede for mac

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    • cp location/of/reference/file/reference.gbk .
  1. be sure to repeat the above step for each fastq and reference file you wish to use, and remember you can make use of the the "*" wildcard to copy multiple files from the same location at once.
  2. submit your job to be run:
Changed:
<
<
    • =sbatch launcher.slurm
>
>
    • sbatch launcher.slurm
 
  1. you should get a series of information saying that your job has been submitted, and once your job starts running you will get emails saying that it has started/finished/errored

Visualizing breseq Output

 
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