Difference: BreseqDevelopment (1 vs. 2)

Revision 22011-01-30 - JeffreyBarrick

  META TOPICPARENT 
 name="ToolsBacterialGenomeResequencing" 


 Breseq Developer Notes
- META TOPICPARENT
+ name="ToolsBacterialGenomeResequencing"
-<
<
+In addition to the normal prerequisites for breseq, you will also need updated versions of these tools to work on breseq development. (On MacOSX, these can be installed using MacPorts.)
->
>
+In addition to the normal prerequisites for breseq, you will also need updated versions of these tools to work on breseq development. On Mac OS X, these can be installed using MacPorts.
-<
<
+ Mercurial
  automake
  autoconf
  libtool
->
>
+ Mercurial
  automake
  autoconf
  libtool
-<
<
+ Sphinx (optional, only required for building documentation)
-<
<
+To get started, first clone the breseq repository.
->
>
+To get started, first clone the breseq code repository.
-<
<
+Then run the bootstrap script. This generates the usual configure script.
->
>
->
>
+ >hg clone http://barricklab.org/hg



Then change into the breseq directory and run the bootstrap script. 


 >./bootstrap



This generates the usual configure script, so now you can:


 >./configure

 >make

 >make install



In order to make dist you will also need to install: 

 Sphinx
 

Again, this can be done using MacPorts on Mac OS X.

Revision 12011-01-25 - JeffreyBarrick

META TOPICPARENT	name="ToolsBacterialGenomeResequencing"

Breseq Developer Notes

In addition to the normal prerequisites for breseq, you will also need updated versions of these tools to work on breseq development. (On MacOSX, these can be installed using MacPorts.)

Mercurial
automake
autoconf
libtool
Sphinx (optional, only required for building documentation)

To get started, first clone the breseq repository.

Then run the bootstrap script. This generates the usual configure script.

View topic | History: r2 < r1 | More topic actions...