Difference: BacterialGeneticCode (1 vs. 5)

Revision 52013-06-08 - JeffreyBarrick

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Bacterial Genetic Code (NCBI Translation Table 11)

  AAs  = FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 
Starts = ---M---------------M------------MMMM---------------M------------
Base1  = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
Base2  = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Base3  = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG

Source: NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi

To convert a nucleotide position within a gene to an amino acid position within a gene (both indexed starting at 1) use the following equation: AA = floor[ (NT-1) / 3 ] + 1.

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Stop codon nomenclature

TAG: amber
TAA: ochre
TGA: opal or umber

META TOPICMOVED	by="JeffreyBarrick" date="1193627803" from="Lab.QuickReference" to="Lab.BacterialGeneticCode"

Revision 42009-04-05 - JeffreyBarrick

META TOPICPARENT	name="WebHome"

Bacterial Genetic Code (NCBI Translation Table 11)

  AAs  = FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 
Starts = ---M---------------M------------MMMM---------------M------------
Base1  = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
Base2  = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Base3  = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG

Source: NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi

Added:

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>

To convert a nucleotide position within a gene to an amino acid position within a gene (both indexed starting at 1) use the following equation: AA = floor[ (NT-1) / 3 ] + 1.

META TOPICMOVED	by="JeffreyBarrick" date="1193627803" from="Lab.QuickReference" to="Lab.BacterialGeneticCode"

Revision 32007-12-06 - JeffreyBarrick

META TOPICPARENT	name="WebHome"

Bacterial Genetic Code (NCBI Translation Table 11)

  AAs  = FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 
Starts = ---M---------------M------------MMMM---------------M------------
Base1  = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
Base2  = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Base3  = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG

Added:

>
>

Source: NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi

META TOPICMOVED	by="JeffreyBarrick" date="1193627803" from="Lab.QuickReference" to="Lab.BacterialGeneticCode"

Revision 22007-10-29 - JeffreyBarrick

META TOPICPARENT	name="WebHome"

Bacterial Genetic Code (NCBI Translation Table 11)

  AAs  = FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 
Starts = ---M---------------M------------MMMM---------------M------------
Base1  = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
Base2  = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Base3  = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG

Added:

>
>

META TOPICMOVED	by="JeffreyBarrick" date="1193627803" from="Lab.QuickReference" to="Lab.BacterialGeneticCode"

Revision 12007-08-31 - JeffreyBarrick

META TOPICPARENT	name="WebHome"

Bacterial Genetic Code (NCBI Translation Table 11)

  AAs  = FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 
Starts = ---M---------------M------------MMMM---------------M------------
Base1  = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
Base2  = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Base3  = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG

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