BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	REL606	1,821,525	IS150 (–) +3 bp	coding (573‑575/1041 nt)	ynjI	predicted inner membrane protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	REL606	= 590471	NA (NA)	45 (0.900)	27/64	0.5	noncoding (1977/1977 nt)	IS150	repeat region
*	?	REL606	= 1821527	65 (1.190)	45 (0.900)	27/64	0.5	coding (573/1041 nt)	ynjI	predicted inner membrane protein
*	?	REL606	1821525 =	50 (1.000)	55 (1.100)	39/64	0.0	coding (575/1041 nt)	ynjI	predicted inner membrane protein
*	?	REL606	3651091 =	NA (NA)	55 (1.100)	39/64	0.0	noncoding (1/1443 nt)	IS150	repeat region

Only 100 of 125 total aligned reads displayed.


TCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATA  >  REL606/1821492‑1821562


tcctccATGTTTGCTTTAAAGGTATTGGCTCCATGG                                     >  1:5146123‑M2/1‑36 (MQ=255)


 cctccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                    <  1:2803284‑M2/36‑2 (MQ=255)


 cctccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                    <  1:1989677‑M2/36‑2 (MQ=255)


 atttcatcgtccaacaaaatgggtgcagtacaTGGt                                    <  1:2314910‑M1/4‑1 (MQ=255)


  tttcatcgtccaacaaactgggtgcagtacaTGGTc                                   <  1:699940‑M1/5‑1 (MQ=255)


  tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                   >  1:5845614‑M1/32‑36 (MQ=255)


  tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                   >  1:5477106‑M1/32‑36 (MQ=255)


  ctccATGTTTGCTTTGAAGGTATTGGCTCCATGGtg                                   >  1:513012‑M2/1‑34 (MQ=255)


   ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                  <  1:3895542‑M1/6‑1 (MQ=255)


   ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                  <  1:6974610‑M1/6‑1 (MQ=255)


    ccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtg                                 >  1:5373176‑M2/1‑32 (MQ=255)


     catcgtccaacaaaatgggtgcagtacaTGGTCGcc                                >  1:231739‑M1/29‑36 (MQ=255)


     cATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtag                                <  1:6892283‑M2/36‑6 (MQ=255)


      atcgtccaacaaaatgggtgcagtacaTGGTCGCCa                               >  1:5679395‑M1/28‑36 (MQ=255)


      atcgtccaacaaaatgggtgcagtacaTGGTCGCCa                               <  1:7293634‑M1/9‑1 (MQ=255)


      aTGTTTGCTTTAAAGGTATTGGCTCCATGGtgtact                               >  1:7130975‑M2/1‑30 (MQ=255)


       tcgtccaacaaaatgggtgcagtacaTGGTCGCCag                              >  1:2388242‑M1/27‑36 (MQ=255)


        gTTTGCTTTAAAGGTATTGGCTCCATGGtgtactga                             >  1:1699419‑M2/1‑28 (MQ=255)


        cgtccaacaaaatgggtgcagtacaTGGTCGCCaga                             >  1:4487025‑M1/26‑36 (MQ=255)


         tttGCTTTAAAGGTATTGGCTCCATGGtgtactgtc                            <  1:532498‑M2/36‑10 (MQ=255)


         tttGCTTTAAAGGTATTGGCTCCATGGtgtactgac                            >  1:1482684‑M2/1‑27 (MQ=255)


         tttGCTATAAAGGTATTGGCTCCATGGtgtactgac                            >  1:1853033‑M2/1‑27 (MQ=255)


         gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                            >  1:3157173‑M1/25‑36 (MQ=255)


          ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                           >  1:224650‑M2/1‑26 (MQ=255)


          ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                           <  1:2061092‑M2/36‑11 (MQ=255)


          ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                           >  1:1517462‑M2/1‑26 (MQ=255)


          ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                           <  1:6333574‑M2/36‑11 (MQ=255)


          ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                           >  1:2590613‑M2/1‑26 (MQ=255)


            caacaaaatgggtgcagtacaTGGTCGCCagaaaga                         >  1:7178314‑M1/22‑36 (MQ=255)


             aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                        >  1:4194055‑M1/21‑36 (MQ=255)


               ttATAGGTATTGGCTCCATGGtgtactgaccccaaa                      >  1:4874782‑M2/1‑21 (MQ=255)


               ttAAAGGTATTAGCTCCATGGtgtactgaccccaaa                      >  1:1715854‑M2/1‑21 (MQ=255)


               ttAAAGATATTGGCTCCATGGtgtactgaccccaaa                      >  1:6155721‑M2/1‑21 (MQ=255)


               caaaatgggtgcagtacaTGGTCGCCAGAAAGaaaa                      <  1:5438125‑M1/18‑1 (MQ=255)


               caaaatgggtgcagtacaTGGTCGCCAGAAAGaaaa                      <  1:4378964‑M1/18‑1 (MQ=255)


                tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                     <  1:3192482‑M2/36‑17 (MQ=255)


                tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                     <  1:4884288‑M2/36‑17 (MQ=255)


                aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                     <  1:6994959‑M1/19‑1 (MQ=255)


                aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                     >  1:4602106‑M1/18‑36 (MQ=255)


                aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                     >  1:7200548‑M1/18‑36 (MQ=255)


                 aaatgggtgcagtacaTGGTCGCCAGAAAGAAAATg                    <  1:7106863‑M1/20‑1 (MQ=255)


                 aaatgggtgcagtacaTGGTCGCCAGAAAGAAAATg                    >  1:5004768‑M1/17‑36 (MQ=255)


                 aaaGGTATTGGCTCCATGGtgtactgaccccataaa                    <  1:3773543‑M2/36‑18 (MQ=255)


                 aaaGGTATTGGCTCCATGGtgtactgaccccaaaaa                    <  1:5878803‑M2/36‑18 (MQ=255)


                  aatgggtgcagtacaTGGTCGCCAGAAAGAAAATGc                   <  1:1345479‑M1/21‑1 (MQ=255)


                  aatgggtgcagtacaTGGTCGCCAGAAAGAAAATGc                   <  1:1153850‑M1/21‑1 (MQ=255)


                  aaGGTATTGGCTCCATGGcgtactgaccccaaaaag                   <  1:6180421‑M2/36‑19 (MQ=255)


                   atgggtgcagtacaTGGTCGCCAGAAAGAAAATGCt                  <  1:3381572‑M1/22‑1 (MQ=255)


                   atgggtgcagtacaTGGTCGCCAGAAAGAAAATGCt                  >  1:1068183‑M1/15‑36 (MQ=255)


                   aGGTATTGGCTCCATGGtgtactgaccccaaaaagt                  <  1:3501010‑M2/36‑20 (MQ=255)


                    tgggtgcagtacaTGGTCGCCAGAAAGAAAATGCTc                 <  1:6042750‑M1/23‑1 (MQ=255)


                    tgggtgcagtacaTGGTCGCCAGAAAGAAAATGCTc                 <  1:509459‑M1/23‑1 (MQ=255)


                    ggTATTGGCTCCATGGtgtactgaccccaaaaagtt                 <  1:1143090‑M2/36‑21 (MQ=255)


                     gggtgcagtacaTGGTCGCCAGAAAGAAAATGCTcc                >  1:3085215‑M1/13‑36 (MQ=255)


                     gggtgcagtacaTGGTCGCCAGAAAGAAAATGCTcc                <  1:1211114‑M1/24‑1 (MQ=255)


                     gTATTGGCTCCATGGtgtactgaccccaaaaagttg                <  1:5651433‑M2/36‑22 (MQ=255)


                     gTATTGGCTCCATGGtgtactgaccccaaaaagttg                >  1:7310376‑M2/1‑15 (MQ=255)


                     gTATTGGCTCCATGGtgtactgaccccaaaaagttg                >  1:537083‑M2/1‑15 (MQ=255)


                      tATTGGCTCCATGGtgtactgaccccaaaaagttgg               <  1:3520693‑M2/36‑23 (MQ=255)


                        tgcagtacaTGGTCGCCAGAAAGAAAATGCTCCAtt             <  1:7394248‑M1/27‑1 (MQ=255)


                         tGGCTCCATGGtgtactgaccccaaaaagttggaca            >  1:2715769‑M2/1‑11 (MQ=255)


                         gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa            >  1:5367923‑M1/9‑36 (MQ=255)


                         gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa            >  1:621987‑M1/9‑36 (MQ=255)


                         gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa            <  1:6682829‑M1/28‑1 (MQ=255)


                          ggCTCCATGGtgtactgaccccaaaaagttggacag           <  1:4673563‑M2/36‑27 (MQ=255)


                          cagtacaTGGTCGCCAGAAAGAAAATGCTCCATTaa           >  1:7349168‑M1/8‑36 (MQ=255)


                           gCTCCATGGtgtactgaccccaaaaagttggacagt          <  1:680187‑M2/36‑28 (MQ=255)


                           agtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAg          >  1:7369400‑M1/7‑36 (MQ=255)


                             tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc        <  1:5149410‑M1/32‑1 (MQ=255)


                             tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc        <  1:6090007‑M1/32‑1 (MQ=255)


                             tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc        <  1:2460269‑M1/32‑1 (MQ=255)


                              ccATGGtgtactgaccccaaaaagttggatagttaa       <  1:6444460‑M2/36‑31 (MQ=255)


                              ccATGGtgtactgaccccaaaaagttggacagttaa       >  1:4763490‑M2/1‑6 (MQ=255)


                              ccATGGtgtactgaccccaaaaagttggacagttaa       <  1:3896494‑M2/36‑31 (MQ=255)


                              acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca       <  1:477‑M1/33‑1 (MQ=255)


                              acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca       >  1:7210678‑M1/4‑36 (MQ=255)


                              acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca       <  1:4123408‑M1/33‑1 (MQ=255)


                               caTGGTCGCCAGAAAGAAAATGCTCCATTTAGGcac      <  1:4435672‑M1/34‑1 (MQ=255)


                               caTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcac      >  1:2034114‑M1/3‑36 (MQ=255)


                               caTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcac      <  1:3223866‑M1/34‑1 (MQ=255)


                               accggtgtactgaccccaaaaagttggacagttaaa      >  1:3344581‑M2/4‑5 (MQ=255)


                                ccggtgtactgaccccaaaaagttggacagttaaac     <  1:6795323‑M2/34‑33 (MQ=255)


                                aTGGtgtactgaccccaaaaagttggacagttaaac     >  1:1745304‑M2/1‑4 (MQ=255)


                                aTGGtgtactgaccccaaaaagttggacagttaaac     <  1:6335118‑M2/36‑33 (MQ=255)


                                aTGGTCGCCAGAAAGAAACTGCCCCATTACGGcaca     >  1:1698422/1‑36 (MQ=21)


                                 tGGtgtactgaccccaaaaagttggacagttaaaca    >  1:5528033‑M2/1‑3 (MQ=255)


                                 cggtgtactgaccccaaaaagttggacagttaaaca    >  1:828944‑M2/2‑3 (MQ=255)


                                 TGGTCGTCAGAAAGAAAATGCTCCATTAAGGCACaa    >  1:7088212‑M1/1‑36 (MQ=255)


                                 TGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACaa    >  1:4111760‑M1/1‑36 (MQ=255)


                                 TGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACaa    <  1:2010298‑M1/36‑1 (MQ=255)


                                  ggtgtactgaccccaaaaagttggacagttaaacac   <  1:4424478‑M2/36‑35 (MQ=255)


                                  ggtgtactaaccccaaaaagttggacagttaaacac   >  1:2909498‑M2/1‑2 (MQ=255)


                                  ggTCGCCAGAAAGAAAATGCTCCATTAAGGCACAAt   >  1:3642424/1‑36 (MQ=255)


                                  ggTCGCCAGAAAGAAAATGCTCCATTAAGGCACAAt   >  1:6784052/1‑36 (MQ=255)


                                   gtgtagtgaccccaaaaagttggacagttaaacacg  >  1:2805898‑M2/1‑1 (MQ=255)


                                   gtgtactgacgccaaaaagttggacagttaaacacg  >  1:1466661‑M2/1‑1 (MQ=255)


                                   gtgtactgaccccaaaaagttggacagttaaacacg  <  1:2537782‑M2/36‑36 (MQ=255)


                                   gtgtactgaccccaaaaagttggacagttaaacacg  >  1:4483913‑M2/1‑1 (MQ=255)


                                   gTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATa  <  1:4824154/36‑1 (MQ=255)


                                   gTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATa  >  1:5476034/1‑36 (MQ=255)


TCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATA  >  REL606/1821492‑1821562

Base quality scores:


ATCG

< 3 ≤


ATCG

< 12 ≤


ATCG

< 22 ≤


ATCG

< 30 ≤


ATCG

< 32 ≤


ATCG