BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	REL606	1,821,525	IS150 (–) +3 bp	coding (573‑575/1041 nt)	ynjI	predicted inner membrane protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	REL606	= 590471	NA (NA)	45 (0.900)	27/64	0.5	noncoding (1977/1977 nt)	IS150	repeat region
*	?	REL606	= 1821527	65 (1.190)	45 (0.900)	27/64	0.5	coding (573/1041 nt)	ynjI	predicted inner membrane protein
*	?	REL606	1821525 =	50 (1.000)	55 (1.100)	39/64	0.0	coding (575/1041 nt)	ynjI	predicted inner membrane protein
*	?	REL606	3651091 =	NA (NA)	55 (1.100)	39/64	0.0	noncoding (1/1443 nt)	IS150	repeat region


CATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATG  >  REL606/3651056‑3651123


cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                  <  1:1687411/36‑1 (MQ=255)


cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                  >  1:3464622/1‑36 (MQ=255)


 aTTGCCAGCCTCCTGTGTTGATTTCCAACGAGTATg                                 <  1:4475944/36‑1 (MQ=255)


 aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATg                                 >  1:1099510/1‑36 (MQ=255)


 aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATg                                 <  1:6944321/36‑1 (MQ=255)


     ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt                             >  1:728188/1‑36 (MQ=255)


     ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt                             >  1:511609/1‑36 (MQ=255)


     ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt                             <  1:421149/36‑1 (MQ=255)


        gCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCa                          <  1:4823869/36‑1 (MQ=255)


        gCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCa                          >  1:3624682/1‑36 (MQ=255)


          ctcctGTGTTGATTTCCAACGAGTATGTACTGCAcc                        <  1:3552868/36‑1 (MQ=255)


           tcctGTGTTGATTTCCAACAAGTATGTACTGCAccc                       >  1:2808013/1‑36 (MQ=255)


            tctGTGTTGATTTCCAACGAGTATGTACTGCACCCa                      >  1:1212379/2‑36 (MQ=255)


            cctGTGTTGATTTCCAACGAGTATGTACTGCACCCa                      >  1:3456018/1‑36 (MQ=255)


             ctGTGTTGATTTCCAACGAGTATGTACTGCACCCAt                     >  1:14735/1‑36 (MQ=255)


               gtgtTGATTTCCAATGAGTTTGTACTGCACCCactc                   >  1:2604279/1‑33 (MQ=21)


               gtgtTGATTTCCAACGAGTATGTACTGCACCCAttt                   >  1:534021/1‑36 (MQ=255)


                tgtTGATTTCCAGCGAGTATGTACTGCACCCAtttt                  <  1:988650/36‑1 (MQ=255)


                tgtTGATTTCCAACGAGTATGTACTGCACCCAtttt                  <  1:4278718/36‑1 (MQ=255)


                 gtTGATTTCCAACGAGTATGTACTGCACCCATTttg                 >  1:5471999/1‑36 (MQ=255)


                 gtTGATTTCCAACGAGTATGTACTGCACCCATTttg                 >  1:3748119/1‑36 (MQ=255)


                 gtTGATTTCCAACGAGTATGTACTGCACCCATTttg                 <  1:4602391/36‑1 (MQ=255)


                  ttGATTTCCAACGAGTATGTACTGCACCCATTttgt                >  1:2117482/1‑36 (MQ=255)


                  ttGATTTCCAACGAGTATGTACTGCACCCATTttgt                <  1:4999072/36‑1 (MQ=255)


                   tGATTTCCAACGAGTATGTACTGCACCCATTttgtt               >  1:6363313/1‑36 (MQ=255)


                    gATTTCCAACGAGTATGTACTGCACCCATTttgttg              >  1:1824591/1‑36 (MQ=255)


                    gATTTCCAACGAGTATGTACTGCACCCATTttgttg              >  1:1656523/1‑36 (MQ=255)


                     aTTTCCAACGAGTATGTACTGCACCCATTTTGTTgg             <  1:830107/36‑1 (MQ=255)


                     aTTTCCAACGAGTATGTACTGCACCCATTTTGTTgg             >  1:1696131/1‑36 (MQ=255)


                     aTTTCCAACGAGTATGTACTGCACCCATTTTGTTgg             <  1:3721491/36‑1 (MQ=255)


                     aTTTCCAACGAGTATGTACTGCACCCATTTTGTTgg             >  1:2551953/1‑36 (MQ=255)


                     aTTTCCAACGAGTATGTACTGCACCCATTTTGTTgg             <  1:1457098/36‑1 (MQ=255)


                       ttCCAACGAGTATGTACTGCACCCATTTTGTTGGAc           >  1:6926913/1‑36 (MQ=255)


                        tCCAACGAGTATGTACTGCACCCATTTTGTTGGACg          >  1:2219086/1‑36 (MQ=255)


                        tCCAACGAGTAAGTACTGCACCCATTTTGTTGGACg          <  1:2371980/36‑1 (MQ=255)


                           aaCGAGTATGTACTGCACCCCTTTTGTTGGACGATg       >  1:386779/1‑36 (MQ=255)


                           aaCGAGTATGTACTGCACCCATTTTGTTGGACGATg       >  1:5275857/1‑36 (MQ=255)


                           aaCGAGTATGTACTGCACCCATTTTGTTGGACGATg       >  1:1226625/1‑36 (MQ=255)


                           aaCGAGTATGTACTGCACCCATTTTGTTGGACGATg       >  1:3163188/1‑36 (MQ=255)


                           aaCGAGTATGTACTGCACCCATTTTGTTGGACGATg       >  1:2066876/1‑36 (MQ=255)


                            aCGAGTATGTACTGCACCCATTTTGTTGGACGATGa      >  1:92210/1‑36 (MQ=255)


                             cGAGTATGTACTGCTCCCATTTTGTTGGACGATGaa     <  1:3244266/36‑1 (MQ=255)


                             cGAGTATGTACTGCACCCATTTTGTTGGACGATgta     >  1:1313843/1‑34 (MQ=255)


                             cGAGTATGTACTGCACCCATTTTGTTGGACGATGaa     <  1:6523520/36‑1 (MQ=255)


                             cGAGTATGTACTGCACCCATTTTGTTGGACGATGaa     <  1:5959816/36‑1 (MQ=255)


                              gAGTATGTACTGCACCCATTTTGTTGGACGATGaaa    >  1:777365/1‑36 (MQ=255)


                              gAGTATGTACTGCACCCATTTTGTTGGACGATGaaa    >  1:786603/1‑36 (MQ=255)


                               aGTATGTACTGCACCCATTTTGTTGGACGATGAAAt   >  1:2792932/1‑36 (MQ=40)


                               aGTATGTACTGCACCCATTTCGTTGGACGATGAAAt   >  1:6765615/1‑36 (MQ=255)


                                gTATGTACTGCACCCATTTTGTTGGACGATGAAATg  <  1:2940576/36‑1 (MQ=38)


                                gTATGTACTGCACCCATTTTGTTGGACGATGAAATg  <  1:2964545/36‑1 (MQ=38)


CATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATG  >  REL606/3651056‑3651123

Base quality scores:


ATCG

< 3 ≤


ATCG

< 12 ≤


ATCG

< 19 ≤


ATCG

< 29 ≤


ATCG

< 32 ≤


ATCG