New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 1200603 =51 (1.050)8 (0.160) 4/62 5.5 coding (362/1137 nt) potA putrescine/spermidine ABC transporter ATPase protein
?REL606 2598461 = 31 (0.570)coding (600/1512 nt) yphE fused predicted sugar transporter subunits of ABC superfamily: ATP‑binding components
Rejected: Position hash score below cutoff.

TTCCATCCGGTGGCTGACATAAATCACCGCCACGCCCAGTGCCGACATCTTTTTCACCGCGCTGAT  >  REL606/2598431‑2598496
                              |                                   
ttcCATCCGGTGGCTGACATTAATCACCGCCACGcc                                >  1:7125924/1‑36 (MQ=255)
ttcCATCCGGTGGCTGACATAAATCACCGCCACGcc                                >  1:140061/1‑36 (MQ=255)
ttcCATCCGGTGGCTGACATAAATCACCGCCACGcc                                >  1:4751644/1‑36 (MQ=255)
 tcCATCCGGTGGCTGACATAAATCACCGCCACGccc                               >  1:4769990/1‑36 (MQ=255)
 tcCATCCGGTGGCTGACATAAATCACCGCCACCccc                               >  1:2368433/1‑36 (MQ=255)
  ccATCGGGTGCCTAACAAAAACCACCGCCACGCCCa                              <  1:1461264/36‑1 (MQ=12)
  ccATCCGGTGGCTGACATAAATCACCGCCACGCCCa                              >  1:4578320/1‑36 (MQ=255)
  ccATCCGGTGGCTGACATAAATCACCCCCCCACCCa                              >  1:1388952/1‑36 (MQ=21)
   cATCCGGTGGCTGACATAAATCACCGCCACGCCCAg                             >  1:5277573/1‑36 (MQ=255)
    gcccGGTGGCTGACATAAACCCCCGCCACGCCCAGt                            <  1:6283927/34‑1 (MQ=21)
      ccGGTGGCTGACATAAATTACCGCCACGCCCAGTGc                          >  1:3177786/1‑36 (MQ=255)
      ccGGTGGCTGACATAAATCACCGCCACGCCCAGTGc                          >  1:217010/1‑36 (MQ=255)
        ggTGGCTGACATAAATCACCGCCACGCCCAGTGCCg                        >  1:5451503/1‑36 (MQ=255)
        ggTGGCTGACATAAATCACCGCCACGCCCAGTGCCg                        >  1:4045803/1‑36 (MQ=255)
           ggCTGACATAAATCACCGCCACGCCCAGTGCCGACa                     >  1:368620/1‑36 (MQ=255)
            gCTGACATAAATCACCGCCACGCCCAGTGCCGACAt                    >  1:7148983/1‑36 (MQ=255)
               gACATAAATCACCGCCACGCCCAGTGCCGACATCtt                 >  1:3488967/1‑36 (MQ=255)
               gACATAAATCACCGCCACGCCCAGTGCCGACATCtt                 >  1:1367197/1‑36 (MQ=255)
                 cATAAATCACCGCCACGCCCAGTGCCGACATCtttt               >  1:749580/1‑36 (MQ=255)
                   tAAATCACCGCCACGCCCCGTGCCGACATCTTTTTc             >  1:7317720/1‑36 (MQ=255)
                   tAAATCACCGCCACGCCCAGTGCCGACATCTTTTTc             >  1:6374220/1‑36 (MQ=255)
                     aaTCACCGCCACGCCCAGTGCCGACATCTTTTTCAc           >  1:7444028/1‑36 (MQ=255)
                     aaTCACCGCCACGCCCAGTGCCGACATCTTTTTCAc           >  1:6739951/1‑36 (MQ=255)
                       tCACCGCCACGCCCAGTGCCGACATCTTTTTCACcg         >  1:827383/1‑36 (MQ=255)
                        ccccGGCACGCCCAGTGCCGACATCTTTTTCACcgc        <  1:6513876/34‑1 (MQ=37)
                        ccccGCCACGCCCAGTGCCGACATCTTTTTCACcgc        <  1:1999333/34‑1 (MQ=255)
                        cACCGCCACGCCCAGTGCCGACATCTTTTTCACcgc        >  1:4898003/1‑36 (MQ=255)
                        cACCGCCACGCCCAGTGCCGACATCTTTTTCACcgc        >  1:6333617/1‑36 (MQ=255)
                         aCCGCCACGCCCAGTGCCGACATCTTTTTCACcgcg       >  1:872873/1‑36 (MQ=255)
                          ccGCCACGCCCAGTGCCGACATCTTTTTCACCgcgc      <  1:1511149/36‑1 (MQ=255)
                           cGCCACGCCCAGTGCCGACATCTTTTTCACCGCGCt     <  1:6344382/36‑1 (MQ=255)
                            gCCACGCCCAGTGCCGACATCTTTTTCACCGCGCta    >  1:1100833/1‑35 (MQ=255)
                            gCCACGCCCAGTGCCGACATCTTTGTCACCGCGCTg    <  1:5942504/36‑1 (MQ=255)
                              cACGCCCAGTGCCGACATCTTTTTCACCGCGCTGAt  >  1:3801913/1‑36 (MQ=255)
                              cACCCCCAGTGCCGACATCTTTTTCACCGCGCTGAt  <  1:3568004/36‑1 (MQ=255)
                              |                                   
TTCCATCCGGTGGCTGACATAAATCACCGCCACGCCCAGTGCCGACATCTTTTTCACCGCGCTGAT  >  REL606/2598431‑2598496

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 32 ≤  ATCG