BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	REL606	= 3417473	65 (1.540)	12 (0.280)	6/54	3.9	coding (613/1221 nt)	argD	bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase
*	?	REL606	= 4222576	45 (0.820)	12 (0.280)	6/54	3.9	coding (1432/1545 nt)	malF	maltose transporter subunit
Rejected: Position hash score below cutoff.


GCACAGCTCGCGCAAGCCCTGCAAAAACTCTGGCGTCGCTGCCGTCACACCGCCCTCGCCCTGGATCGGC  >  REL606/3417438‑3417507


gCACAGCTCGCGCAAGCCCTGCAAAAACTCTGGCGt                                    >  1:1455484/1‑36 (MQ=255)


 cacaGCTCGCGCAAGCCCTGCAAAAACTCTGGGGTc                                   >  1:5122302/1‑36 (MQ=255)


 cacaGCTCGCGCAAGCCCTGCAAAAACTCTGGCGTc                                   <  1:6042774/36‑1 (MQ=255)


 cacaGCTCGCGCAAGCCCTGCAAAAACTCTGGCGTc                                   <  1:2364415/36‑1 (MQ=255)


 cacaGCACGCGCAAGCCCTGCAAAAACTCTGGCGTc                                   <  1:4897076/36‑1 (MQ=255)


  acaGCTCGCGCAAGCCCTGCAAAAACTCTGGCGTCg                                  <  1:4246222/36‑1 (MQ=255)


  acaGCTCGCGCAAGCCCTGCAAAAACTCTGGCGTCg                                  >  1:2667517/1‑36 (MQ=255)


  acaGCTCGCGCAAGCCCTGCAAAAACTCTGGCGTCg                                  <  1:6148997/36‑1 (MQ=255)


  acaGCTCGCGCAAGCCCTGCAAAAACTCTGGCGTCg                                  >  1:1620399/1‑36 (MQ=255)


   caGCTCGCGCAAGCCCTGCAAAAACTCTGGCGTCGc                                 >  1:5762040/1‑36 (MQ=255)


    atcTCGCGCAAGCCCTGCAAAAACTCTGGCGTCGCt                                <  1:2287935/34‑1 (MQ=255)


    aGCTCGCGCAAGCCCTGCAAAAACTCTGGCGTCGCt                                <  1:2276462/36‑1 (MQ=255)


    aGCTCGCGCAAGCCCTGCAAAAACTCTGGCGTCGCt                                <  1:5625771/36‑1 (MQ=255)


     gCTCGCG.AAGCCCTGCAAAAACTCTGGCGTCGCTGc                              >  1:7415059/1‑36 (MQ=17)


      cTCGCGCAAGCCCTGCAAAAACTCTGGCGTCGCTGc                              >  1:6447356/1‑36 (MQ=255)


      cTCGCGCAAGCCCTGCAAAAACTCTGGCGTCGCTGc                              <  1:4746141/36‑1 (MQ=255)


      cTCGCGCAAGCCCTGCAAAAACTCTGGCGTCGCTGc                              <  1:997420/36‑1 (MQ=255)


      cTCGCACAAGCCCTGCAAAAACTCTGGCGTCGCTGc                              <  1:6275389/36‑1 (MQ=255)


       tCGCGCAAGCCCTGCAAAAACTCTGGCGTCGCTGcc                             >  1:2883158/1‑36 (MQ=255)


        cgcgCAAGCCCTGCAAAAACTCTGGCGTCGCTGCCg                            >  1:2322311/1‑36 (MQ=255)


         gcgcAAGCCCTGCAAACACTCTGGCGTCGCTGCCgc                           >  1:1356318/1‑35 (MQ=25)


          cgcAAGCCCTGCAAAAACTCTGGCGTCGCTGCCGTc                          <  1:1201926/36‑1 (MQ=255)


          cccAAGCCCTGCAAAAACTCTGGCGTCGCTGCCGTc                          <  1:1391583/34‑1 (MQ=255)


           gcAAGCCCTGCAAAAACTCTGGCGTCGCTGCCGTca                         <  1:3952335/36‑1 (MQ=255)


            cAAGCCCTGCAAAACCTCTGGCGTCGCTGCCGTcac                        <  1:3018248/36‑1 (MQ=255)


            cAACCCCTGCAAAAACTCTGGCGTCGCTGCCGTcac                        <  1:3028958/36‑1 (MQ=255)


             aaGCCCTGCAAAAACTCTGGCGTCGCTGCCGTcaca                       >  1:6674380/1‑36 (MQ=255)


              aGCCCTGCAAAAACTCTGGCGTCGCTGCCGTCacac                      >  1:3400827/1‑36 (MQ=255)


               gCCCTGCAAAAACTCTGGCGTCGCTGCCGTCACAcc                     >  1:7424822/1‑36 (MQ=255)


               gCCCTGCAAAAACTCTGGCGTCGCTGCCGTCACAcc                     >  1:2955433/1‑36 (MQ=255)


                  cTGAAATAACTCTGGCGTCGCTGCCGTCACACcgcc                  <  1:814388/36‑1 (MQ=25)


                    gCAAAACCTCGGGCGTCCCTGCCGTCACACcgccct                <  1:4701858/36‑1 (MQ=21)


                     cAAAAACTCTGGCGTCGCTGCCGTCACACcgccctc               >  1:297407/1‑36 (MQ=255)


                     cAAAAACTCTGGCGTCGCTGCCGTCACACcgccctc               >  1:6872606/1‑36 (MQ=255)


                     cAAAAACCCTGGCGTCGCTGCCGTCACACcgccctc               <  1:6079083/36‑1 (MQ=255)


                     cAAAAACCCTGGCGTCGCTGCCGTCACACcgccctc               <  1:5462799/36‑1 (MQ=255)


                      aaaaaCTCTGGCGTCGCTGCCGTCACACcgccctcg              <  1:495667/36‑1 (MQ=255)


                      aaaaaCTCTGGCGTCGCTGCCGTCACACcgccctcg              >  1:1394405/1‑36 (MQ=255)


                      aaaaaCTCTGGCGTCGCTGCCGTCACACcgccctcg              >  1:5876943/1‑36 (MQ=255)


                        aacctctGGCGTCGCTGCCGTCACACcgccctcgcc            <  1:3630358/33‑1 (MQ=255)


                        aaaCTCTGGCGTCGCTGCCGTCACACcgccctcgcc            >  1:6142325/1‑36 (MQ=255)


                        aaaCTCTGCGTTCGCTGCCGTCACACcgccctcgcc            <  1:3966645/36‑1 (MQ=21)


                         aaCTCTGGCGCCGCTGCCGTCACACggccctcgccc           <  1:5250613/36‑1 (MQ=25)


                          acgctGGCGCCGCTGCCGTCACACcgccctcgccct          <  1:890083/33‑1 (MQ=25)


                          aCTCTGGCGTCGCTGCCGTCACACcgccctcgccct          <  1:870363/36‑1 (MQ=255)


                           ctcgGGAGTTGCTGCCGTCACACcgccctcgccccg         >  1:6237225/1‑34 (MQ=18)


                            tctGGCGTCGCTGCCGTCACACCGCCCTCGCCCTgg        >  1:5012203/1‑36 (MQ=255)


                            tctGGCGGCGCTGCCGTCACACCGCCCTCGCCCTgg        <  1:495876/36‑1 (MQ=255)


                            cctGGCCTCGCTGCCGTCACACCGCCCTCGCCCTgg        <  1:390248/35‑1 (MQ=255)


                             ctGGCGTGGCTGCCGTCACACCGCCCTCGCCCTGGa       <  1:3623686/36‑1 (MQ=255)


                             ctGGCGTCGCTGCCGTCACACCGCCCTCGCCCTGGa       <  1:3695093/36‑1 (MQ=255)


                             cgggCGTCGCTGCCGTCACACCGCCCTCGCCCTGGa       <  1:2145221/34‑1 (MQ=255)


                              tGGCGTCGCTGCCGTCACACCGCCCTCGCCCTGGAt      >  1:5479885/1‑36 (MQ=255)


                              tGGCGTCGCTGCCGTCACACCGCCCTCGCCCTGGAt      >  1:2933797/1‑36 (MQ=255)


                              tGGCGTCGCTGCCGTCACACCGCCCTCGCCCTGGAt      >  1:2469851/1‑36 (MQ=255)


                              tGGCGCCGCTGCCGTCACACCGCCCTCGCCCTGGAt      <  1:7424058/36‑1 (MQ=255)


                               ggCGTCGCTGCCGTCACACCGCCCTCGCCCTGGATc     <  1:6792995/36‑1 (MQ=255)


                               ggCGTCGCTGCCGCCACACCGCCCTCGCCCTGGATc     >  1:6529640/1‑36 (MQ=255)


                               ggCGCCGCTGCCGTCACACCGCCCTCGCCCTGGATc     <  1:3243594/36‑1 (MQ=255)


                               cgCGCCGCTCCCGTCACACCGCCCTCGCCCTGGATc     <  1:7290658/35‑1 (MQ=21)


                                gCGTCGCTGCCGTCACACCGCCCTCGCCCTGGATCg    >  1:4678204/1‑36 (MQ=255)


                                gCGTCGCTGCCGTCACACCGCCCTCGCCCTGGATCg    >  1:852863/1‑36 (MQ=255)


                                 cGTCGCTGCCGTCACACCGCCCTCGCCCTGGATCgg   >  1:4006582/1‑36 (MQ=255)


                                 cGTCGCTGCCGTCACACCGCCCTCGCCCTGGATCgg   >  1:2017102/1‑36 (MQ=255)


                                  gTCGCTGCCGTCACACCGCCCTCGCCCTGGATCGGc  >  1:6615788/1‑36 (MQ=255)


                                  gTCGCTGCCGTCACACCGCCCTCGCCCTGGATCGGc  >  1:1889670/1‑36 (MQ=255)


GCACAGCTCGCGCAAGCCCTGCAAAAACTCTGGCGTCGCTGCCGTCACACCGCCCTCGCCCTGGATCGGC  >  REL606/3417438‑3417507

Base quality scores:


ATCG

< 3 ≤


ATCG

< 7 ≤


ATCG

< 15 ≤


ATCG

< 27 ≤


ATCG

< 32 ≤


ATCG