New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 = 590471NA (NA)31 (0.600) 22/66 1.0 noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 3630716 NA (NA)intergenic (‑171/‑305) ldrD/yhjV toxic polypeptide, small/predicted transporter

GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGG  >  REL606/590440‑590506
                               |                                   
gtTTAACTGTCCATCTTTTTGGGGTCAGTACACCCt                                 <  1:1102877/36‑1 (MQ=255)
gtTTAACTGTCCAACTTTTTGGGGTCAGTACACCCt                                 <  1:3566391/36‑1 (MQ=38)
gtTTAACTGTCCAACTTTTTGGGGTCAGTACACCCt                                 >  1:1461330/1‑36 (MQ=38)
gtTTAACTGTCCAACTTTTTGGGGTCAGTACACCCt                                 <  1:607009/36‑1 (MQ=38)
gtTTAACTGTCCAACTTACTGGGGTCAGTACAccat                                 <  1:6741177/36‑3 (MQ=11)
 tttAACTGTCCAACTTTTTGGGGTCAGTACACCCTg                                <  1:5694411/36‑1 (MQ=38)
 tttAACTGTCCAACTTTTTGGGGTCAGTACACCCTg                                >  1:1223883/1‑36 (MQ=38)
  ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTgg                               >  1:1968965/1‑36 (MQ=40)
  ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTgg                               >  1:3441652/1‑36 (MQ=40)
  ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTgg                               >  1:5341149/1‑36 (MQ=40)
   tAACTGTCCAACTTTTTGGGGTCAGTACACCCTggg                              <  1:341942/36‑1 (MQ=255)
    aaCTGTCCAACTTTTTGGGGTCAGTACACCCTgggg                             <  1:7261119/36‑1 (MQ=255)
     aCTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGc                            >  1:7488062/1‑36 (MQ=255)
      cTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCt                           <  1:6451006/36‑1 (MQ=255)
       tGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg                          >  1:2513591/1‑36 (MQ=255)
       tGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg                          <  1:5344512/36‑1 (MQ=255)
       tGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg                          >  1:356644/1‑36 (MQ=255)
       tGTCCAACTTTTTGGGGTCACTACAACCAGGGGccg                          >  1:7162101/1‑34 (MQ=1)
            atttttttGGGGTCAGTACACCCTGGGGCTGCCACt                     <  1:94614/33‑1 (MQ=255)
              cTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTcc                   >  1:429528/1‑36 (MQ=255)
                ttttAGAGTCAGAACACCCTGGGGCTGCCACTCCaa                 <  1:452530/36‑1 (MQ=21)
                 tttGGGGTCAGTACACCCTGGGGCTGCCACTCCaaa                >  1:4573857/1‑36 (MQ=255)
                 ttgggggTCAGTACCCCCTGGGGCTGCCACTCCaaa                <  1:320774/33‑1 (MQ=25)
                  ttGGGGTCAGTACCCCCTGGGGCTGCCACTCCAAAc               <  1:7024347/36‑1 (MQ=255)
                    ggggTCAGTACACCCTGGGGCTGCCACTCCAAAccc             >  1:2036172/1‑36 (MQ=255)
                     gggTCAGTACACCCTGGGGCTGCCACTCCAAACCCg            >  1:3413636/1‑36 (MQ=255)
                        tCACTACCCCCTGGCCCTGCCACTCCAAACCCGAAc         <  1:3736002/36‑1 (MQ=255)
                         cAGTACACCCTGGGGCTGCCACTCCAAACCCGAACa        >  1:3869919/1‑36 (MQ=255)
                         cAGTACACCCTGGGGCTGCCACTCCAAACCCGAACa        >  1:1840411/1‑36 (MQ=255)
                           gTACACCCTGGGGCTGCCACTCCAACCCCGAACCAt      >  1:3694195/1‑36 (MQ=25)
                           gTACACCCTGGGGCTGCCACTCCAAACCCGAACAAt      >  1:1556877/1‑36 (MQ=255)
                             acacCTTGGGGCTGCCACTCCAAACCCGAACAAttt    >  1:5675069/1‑36 (MQ=255)
                             acacCCTGGGGCTGCCACTCCAAACCCGAACAAttt    >  1:2804529/1‑36 (MQ=255)
                             acacCCTGGGGCTGCCACTCCAAACCCGAACAAttt    <  1:4039757/36‑1 (MQ=255)
                             acacCCGGGGGCTGCCACTCCAAACCCGAACAAttt    <  1:3276241/36‑1 (MQ=255)
                              cacCCTGGGGCTGCCACTCCAAACCCGAACAATTTg   >  1:4831346/1‑36 (MQ=255)
                              cacCCTGGGGCTGCCACTCCAAACCCGAACAACTTg   >  1:2798588/1‑36 (MQ=255)
                               acCCTGGGGCTGCCACTCCAAACCCGAACAATTTgg  >  1:1681483/1‑36 (MQ=255)
                               |                                   
GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGG  >  REL606/590440‑590506

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 19 ≤  ATCG  < 29 ≤  ATCG  < 32 ≤  ATCG