Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp intergenic (‑14/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 16972 =52 (0.980)62 (1.160) 23/68 1.0 intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 3893554 = NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 1697456 (1.190)0 (0.000) 27/60 0.4 intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

Only 100 of 115 total aligned reads displayed.

ACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTAT  >  REL606/16939‑17008
                                   |                                  
catttcatcgtccaacaaaatgggtgcagtacaGGt                                    <  1:7291405‑M1/3‑1 (MQ=255)
aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGT                                    <  1:5865477‑M1/36‑1 (MQ=255)
aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGT                                    >  1:1634997‑M1/1‑36 (MQ=255)
aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGT                                    >  1:59974‑M1/1‑36 (MQ=255)
 ctctACATGTGTTCAGCATATAGGGGGCCTCGGGTt                                   <  1:2317586‑M1/36‑2 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaGGtt                                   >  1:1082745‑M1/33‑36 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaGGtt                                   >  1:3084830‑M1/33‑36 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaGGtt                                   >  1:3697993‑M1/33‑36 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaGGtt                                   >  1:2444431‑M1/33‑36 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaGGtt                                   <  1:5323732‑M1/4‑1 (MQ=255)
 attacatcgtccaacaaaatgggtgcagtacaGGtt                                   >  1:4664655‑M1/33‑36 (MQ=255)
 atatcatcgtccaacaaaatgggtgcagtacaGGtt                                   >  1:2647117‑M1/33‑36 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacaGGTTg                                  >  1:2878251‑M1/32‑36 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacaGGTTg                                  >  1:3906480‑M1/32‑36 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacaGGTTg                                  <  1:4774667‑M1/5‑1 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                 >  1:744184‑M1/31‑36 (MQ=255)
   ctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgt                                 <  1:5617853‑M1/36‑4 (MQ=255)
    tcatcgtccaacaaaatgggttcagtacaGGTTGAt                                >  1:6849688‑M1/30‑36 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                                >  1:6278753‑M1/30‑36 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                                <  1:4948024‑M1/7‑1 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                                >  1:3454125‑M1/30‑36 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                                >  1:1225224‑M1/30‑36 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                                >  1:7160126‑M1/30‑36 (MQ=255)
    tACATGTGTTCAGCATATAGGGGGCCTCGGGTtgta                                >  1:3118647‑M1/1‑32 (MQ=255)
     catcgtccaacaaaatgggtgcagtacaGGTTGATa                               <  1:1182391‑M1/8‑1 (MQ=255)
     catcgtccaacaaaatgggtgcagtacaGGTTGATa                               <  1:3865091‑M1/8‑1 (MQ=255)
     aCATGTGTTCAGCATGTAGGGGGCCTCGGGTtgtac                               <  1:5767305‑M1/36‑6 (MQ=255)
     aCATGTGTTCAGCATATAGGGGGCCTCGGGTtgtac                               <  1:6925331‑M1/36‑6 (MQ=255)
      cATGTGTTCAGCATATAGGGGGCCTCGGGTtgtact                              <  1:6616203‑M1/36‑7 (MQ=255)
      cATGTGTTCAGCATATAGGGGGCCTCGGGTtgtact                              <  1:2732254‑M1/36‑7 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaGGTTGATAg                              >  1:4474419‑M1/28‑36 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaGGTTGATAg                              >  1:2521671‑M1/28‑36 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaGGTTGATAg                              >  1:6161269‑M1/28‑36 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaGGTTGATAg                              <  1:5640521‑M1/9‑1 (MQ=255)
       aTGTGTTCAGCATATAGGGGGCCTCGGGTtgtactg                             >  1:1214723‑M1/1‑29 (MQ=255)
       aTGTGTTCAGCATATAGGGGGCCTCGGGTtgtactg                             >  1:6690776‑M1/1‑29 (MQ=255)
        tgtgTTCAGCATATAGGGGGCCTCGGGTtgtactga                            <  1:1058422‑M1/36‑9 (MQ=255)
        cgtccaacaaaatgggtgcagtacaGGTTGATAGTa                            >  1:2844169‑M1/26‑36 (MQ=255)
        cgtccaacaaaatgggtgcagtacaGGTTGATAGTa                            <  1:5739600‑M1/11‑1 (MQ=255)
         gtgtTCAGCATATAGGGGGCCTCGGGTtgtactgac                           <  1:2915708‑M1/36‑10 (MQ=255)
         gtccaacaaaatgggtgcagtacaGGTTGATAGTaa                           <  1:5618638‑M1/12‑1 (MQ=255)
         gtccaacaaaatgggtgcagtacaGGTTGATAGTaa                           >  1:6272350‑M1/25‑36 (MQ=255)
          tccaacaaaatgggtgcagtacaGGTTGATAGTaaa                          >  1:1969473‑M1/24‑36 (MQ=255)
           ccaacaaaatgggtgcagtacaGGTTGATAGTaaaa                         >  1:6269135‑M1/23‑36 (MQ=255)
            ttCTGCATATAGGGGGCCTCGGGTtgtactgaccct                        <  1:5327146‑M1/36‑13 (MQ=255)
            ttCAGCATATAGGGGGCCTCGGGTtgtactgacccc                        <  1:2972812‑M1/36‑13 (MQ=255)
            ttCAGCATATAGGGGGCCTCGGGTtgtactgacccc                        <  1:6869611‑M1/36‑13 (MQ=255)
            caacaaaatgggtgcagtacaGGTTGATAGTAAAat                        <  1:5290773‑M1/15‑1 (MQ=255)
            caacaaaatgggtgcagtacaGGTTGATAGTAAAat                        >  1:3322049‑M1/22‑36 (MQ=255)
            caacaaaatgggtgcagtacaGGTTGATAGTAAAat                        >  1:1495778‑M1/22‑36 (MQ=255)
             tCAGCATATAGGGGGCCTCGGGTtgtactgacccca                       <  1:1832588‑M1/36‑14 (MQ=255)
             tCAGCATATAGGGGGCCTCGGGTtgtactgacccca                       <  1:4334149‑M1/36‑14 (MQ=255)
             tCAGCATATAGGGGGCCTCGGGTtgtactgacccca                       >  1:1527195‑M1/1‑23 (MQ=255)
             aacaaaatgggtgcagtacaGGTTGATAGTAAAata                       >  1:125870‑M1/21‑36 (MQ=255)
             aacaaaatgggtgcagtacaGGTTGATAGTAAAata                       <  1:73612‑M1/16‑1 (MQ=255)
              cAGCATATAGGGGGCCTCGGGTtgtactgaccccaa                      >  1:97758‑M1/1‑22 (MQ=255)
              acaaaatgggtgcaatacaGGTTGATAGTAAAatat                      >  1:2257065‑M1/20‑36 (MQ=255)
                gCATATAGGGGGCCTCGGGTtgtactgaccccaaaa                    <  1:3646995‑M1/36‑17 (MQ=255)
                aaaatgggtgcagtacaGGTTGATAGTAAAATATCa                    <  1:7309779‑M1/19‑1 (MQ=255)
                aaaatgggtgcagtacaGGTTGATAGTAAAATATCa                    >  1:4958101‑M1/18‑36 (MQ=255)
                aaaatgggtgcagtacaGGTTGATAGTAAAATATCa                    >  1:6949456‑M1/18‑36 (MQ=255)
                aaaatgggtgcagtacaGGTTGATAGTAAAATATCa                    >  1:1493817‑M1/18‑36 (MQ=255)
                 cATATAGGGGGCCTCGGGTtgtactgaccccaaaaa                   >  1:1513629‑M1/1‑19 (MQ=255)
                  atatAGGGGGCCTCGGGTtgtactgaccccaaaaag                  <  1:6267473‑M1/36‑19 (MQ=255)
                  atatAGGGAGCCTCGGGTtgtactgaccccaaaaag                  <  1:2562359‑M1/36‑19 (MQ=255)
                  aatgggtgcagtacaGGTTGATAGTAAAATATCACt                  >  1:6013498‑M1/16‑36 (MQ=255)
                  aatgggtgcagtacaGGTTGATAGTAAAATATCACt                  >  1:270010‑M1/16‑36 (MQ=255)
                   tataGGGGGCCTCGGGTtgtactgaccccaaaaagt                 <  1:2552035‑M1/36‑20 (MQ=255)
                   atgggtgcagtacaGGTTGATAGTAAAATATCACTc                 >  1:2469321‑M1/15‑36 (MQ=255)
                     taGGGGGCCTCGGGTtgtactgaccccaaaaagatg               >  1:3727708‑M1/1‑15 (MQ=255)
                     gggtgcagtacaGGTTGATAGTAAAATATTACTCgg               <  1:7078153‑M1/24‑1 (MQ=255)
                       gggggCCGCGGGTtgtactgaccccaaaaagttgga             <  1:5480784‑M1/36‑24 (MQ=255)
                         gagccTCGGGTtgtactgaccccaaaaagttggaca           <  1:2249972‑M1/34‑26 (MQ=255)
                          ggCCTCGGGTtgtactgaccccaaaaagttggacag          <  1:3242481‑M1/36‑27 (MQ=255)
                          cagtacaGGTTGATAGTAAAATATCACTCGGGGCtt          >  1:5088594‑M1/8‑36 (MQ=255)
                          cagtacaGGTTGATAGTAAAATATCACTCGGGGCtt          >  1:1711134‑M1/8‑36 (MQ=255)
                           gtctcGGGTtgtactgaccccaaaaagttggacagt         <  1:2234748‑M1/34‑28 (MQ=255)
                            gtacaGGTTGATAGTAAAATATCACTCGGGGCtttt        >  1:857310‑M1/6‑36 (MQ=255)
                            gtacaGGTTGATAGTAAAATATCACTCGGGGCtttt        >  1:2447902‑M1/6‑36 (MQ=255)
                            ccTCGGGTtgtactgaccccaaaaagttggacagtt        <  1:3398436‑M1/36‑29 (MQ=255)
                            ccTCGGGTtgtactgaccccaaaaagttggacagtt        <  1:6937842‑M1/36‑29 (MQ=255)
                            ccTCGGGTtgtactgaccccaaaaagttggacagtt        <  1:6150885‑M1/36‑29 (MQ=255)
                            ccTCGGGTtgtactgaccccaaaaagttggacagtc        <  1:7417408‑M1/36‑29 (MQ=255)
                             tacaGGTTGATAGTAAAATATCACTCGGGGCTTTtc       >  1:4755282‑M1/5‑36 (MQ=255)
                             cTCGGGTtgtactgaccccaaaaagttgaacagtta       >  1:4553919‑M1/1‑7 (MQ=255)
                              tCGGGTtgtactgaccccaaaaagttggacagttaa      >  1:812306‑M1/1‑6 (MQ=255)
                              acaGGTTGATAGTAAAATATCACTCGGGGCTTTtct      >  1:922425‑M1/4‑36 (MQ=255)
                               caGGTTGATAGTAAAATATCACTCGGGGCTTTtctc     <  1:2171522‑M1/34‑1 (MQ=255)
                               cGGGTtgtactgaccccaaaaagttggacagttaaa     <  1:466506‑M1/36‑32 (MQ=255)
                                gggTtgtactgaccccaaaaagttggacagttaaac    >  1:2245043‑M1/1‑4 (MQ=255)
                                gggTtgtactgaccccaaaaagttggacagttaaac    >  1:5058971‑M1/1‑4 (MQ=255)
                                aGGTTGATAGTAAAATATCACTCGGGGCTTTTctct    >  1:3947821‑M1/2‑36 (MQ=255)
                                aGGTTGATAGTAAAATATCACTCGGGGCTTTTctct    >  1:50335‑M1/2‑36 (MQ=255)
                                 ggTtgtactgaccccaaaaagttggacagttaaaca   >  1:4993412‑M1/1‑3 (MQ=255)
                                 ggTtgtactgaccccaaaaagttggacagttaaaca   <  1:3770937‑M1/36‑34 (MQ=255)
                                  gTtttactgaccccaaaaagttggacagttaaacac  <  1:5883552‑M1/36‑35 (MQ=255)
                                  gTtgtactgaccccaaaaagttggacagttaaacac  <  1:7389542‑M1/36‑35 (MQ=255)
                                  gTtgtactgaccccaaaaagttggacagttaaacac  <  1:7201092‑M1/36‑35 (MQ=255)
                                  gTtgtactgaccccaaaaagttggacagttaaacac  >  1:1315193‑M1/1‑2 (MQ=255)
                                  gTtgtactgaccccaaaaagttggacagttaaacac  >  1:5463935‑M1/1‑2 (MQ=255)
                                   |                                  
ACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTAT  >  REL606/16939‑17008

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 21 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG