BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	REL606	1,821,525	IS150 (–) +3 bp	coding (573‑575/1041 nt)	ynjI	predicted inner membrane protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	REL606	= 590471	NA (NA)	45 (0.900)	27/64	0.5	noncoding (1977/1977 nt)	IS150	repeat region
*	?	REL606	= 1821527	65 (1.190)	45 (0.900)	27/64	0.5	coding (573/1041 nt)	ynjI	predicted inner membrane protein
*	?	REL606	1821525 =	50 (1.000)	55 (1.100)	39/64	0.0	coding (575/1041 nt)	ynjI	predicted inner membrane protein
*	?	REL606	3651091 =	NA (NA)	55 (1.100)	39/64	0.0	noncoding (1/1443 nt)	IS150	repeat region


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACC..................................  >  REL606/590436‑590471


...................................ACCATGGAGCCAATACCTTTAAAGCAAACATGGAGGA  <  REL606/1821527‑1821492


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                      <  1:844983/36‑1 (MQ=1)


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                      >  1:728909/1‑36 (MQ=1)


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                      >  1:6552901/1‑36 (MQ=1)


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                      >  1:598790/1‑36 (MQ=1)


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                      <  1:5703481/36‑1 (MQ=1)


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                      >  1:541234/1‑36 (MQ=1)


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                      <  1:46213/36‑1 (MQ=1)


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                      <  1:4414280/36‑1 (MQ=1)


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                      <  1:4356688/36‑1 (MQ=1)


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                      >  1:4301361/1‑36 (MQ=1)


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                      >  1:2629405/1‑36 (MQ=1)


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                      <  1:2331407/36‑1 (MQ=1)


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                      <  1:1027148/36‑1 (MQ=1)


 CGTGTTTAACTGTCCAACTTTTTGGGGTGAGTACAC                                     <  1:4521035/36‑1 (MQ=0)


 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC                                     <  1:2537782/36‑1 (MQ=1)


 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC                                     <  1:7034392/36‑1 (MQ=1)


 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC                                     >  1:4483913/1‑36 (MQ=1)


 CGTGTTTAACTGTCCAACTTTTTGGGGTCACTACAC                                     >  1:2805898/1‑36 (MQ=0)


 CGTGTTTAACTGTCCAACTTTTTGGCGTCAGTACAC                                     >  1:1466661/1‑36 (MQ=0)


  GTGTTTAACTGTCCAACTTTTTGGGGTTAGTACACC                                    >  1:2909498/1‑36 (MQ=0)


  GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACC                                    <  1:4424478/36‑1 (MQ=1)


   TGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCg                                   >  1:828944/1‑35 (MQ=1)


   TGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCg                                   <  1:680272/36‑2 (MQ=1)


   TGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCA                                   >  1:5528033/1‑36 (MQ=32)


    GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCgg                                  <  1:6795323/36‑3 (MQ=1)


    GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCAT                                  <  1:6335118/36‑1 (MQ=35)


    GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCAT                                  >  1:478875/1‑36 (MQ=35)


    GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCAT                                  >  1:1745304/1‑36 (MQ=35)


    GTTTAACTGTCCAACTTTTTGGGGTCAGTACACCAT                                  >  1:1293603/1‑36 (MQ=35)


     TTTAACTGTCCAACTTTTTGGGGTCAGTACACCggt                                 >  1:3344581/1‑33 (MQ=1)


     TTTAACTGTCCAACTTTTTGGGGTCAGTACACAATG                                 <  1:3902506/36‑1 (MQ=12)


      TTAACTGTCCAACTTTTTGGGGTCAGTACACCATGG                                >  1:4763490/1‑36 (MQ=40)


      TTAACTGTCCAACTTTTTGGGGTCAGTACACCATGG                                <  1:3896494/36‑1 (MQ=40)


      TTAACTATCCAACTTTTTGGGGTCAGTACACCATGG                                <  1:6444460/36‑1 (MQ=255)


         ACTGTCCAACTTTTTGGGGTCAGTACACCATGGAGC                             <  1:680187/36‑1 (MQ=255)


          CTGTCCAACTTTTTGGGGTCAGTACACCATGGAGCC                            <  1:4673563/36‑1 (MQ=255)


           TGTCCAACTTTTTGGGGTCAGTACACCATGGAGCCA                           >  1:2715769/1‑36 (MQ=255)


            GTCCAACTTTTTGGGGTCAGTACACCATGGAGCCAA                          >  1:3589120/1‑36 (MQ=255)


              CCAACTTTTTGGGGTCAGTACACCATGGAGCCAATA                        <  1:3520693/36‑1 (MQ=255)


              CCAACTTTTTGGGGTCAGTACACCATGGAGCCAATA                        <  1:5058929/36‑1 (MQ=255)


               CAACTTTTTGGGGTCAGTACACCATGGAGCCAATAC                       >  1:1596581/1‑36 (MQ=255)


               CAACTTTTTGGGGTCAGTACACCATGGAGCCAATAC                       <  1:5651433/36‑1 (MQ=255)


               CAACTTTTTGGGGTCAGTACACCATGGAGCCAATAC                       >  1:537083/1‑36 (MQ=255)


               CAACTTTTTGGGGTCAGTACACCATGGAGCCAATAC                       >  1:7310376/1‑36 (MQ=255)


                AACTTTTTGGGGTCAGTACACCATGGAGCCAATACC                      <  1:1143090/36‑1 (MQ=255)


                 ACTTTTTGGGGTCAGTACACCATGGAGCCAATACCT                     <  1:3501010/36‑1 (MQ=255)


                  CTTTTTGGGGTCAGTACGCCATGGAGCCAATACCTT                    <  1:6180421/36‑1 (MQ=255)


                   TTTTTGGGGTCAGTACACCATGGAGCCAATACCTTT                   <  1:5878803/36‑1 (MQ=255)


                   TTTATGGGGTCAGTACACCATGGAGCCAATACCTTT                   <  1:3773543/36‑1 (MQ=255)


                    TTTTGGGGTCAGTACACCATGGAGCCAATACCTTTA                  <  1:3192482/36‑1 (MQ=255)


                    TTTTGGGGTCAGTACACCATGGAGCCAATACCTTTA                  <  1:4884288/36‑1 (MQ=255)


                     TTTGGGGTCAGTACACCATGGAGCTAATACCTTTAA                 >  1:1715854/1‑36 (MQ=255)


                     TTTGGGGTCAGTACACCATGGAGCCAATATCTTTAA                 >  1:6155721/1‑36 (MQ=255)


                     TTTGGGGTCAGTACACCATGGAGCCAATACCTATAA                 >  1:4874782/1‑36 (MQ=255)


                          GGTCAGTACACCATGGAGCCAATACCTTTAAAGCAA            <  1:2061092/36‑1 (MQ=255)


                          GGTCAGTACACCATGGAGCCAATACCTTTAAAGCAA            >  1:224650/1‑36 (MQ=255)


                          GGTCAGTACACCATGGAGCCAATACCTTTAAAGCAA            >  1:2590613/1‑36 (MQ=255)


                          GGTCAGTACACCATGGAGCCAATACCTTTAAAGCAA            <  1:6333574/36‑1 (MQ=255)


                          GGTCAGTACACCATGGAGCCAATACCTTTAAAGCAA            >  1:1517462/1‑36 (MQ=255)


                           gaCAGTACACCATGGAGCCAATACCTTTAAAGCAAA           <  1:532498/34‑1 (MQ=255)


                           GTCAGTACACCATGGAGCCAATACCTTTATAGCAAA           >  1:1853033/1‑36 (MQ=255)


                           GTCAGTACACCATGGAGCCAATACCTTTAAAGCAAA           >  1:1482684/1‑36 (MQ=255)


                            TCAGTACACCATGGAGCCAATACCTTTAAAGCAAAC          >  1:1699419/1‑36 (MQ=255)


                              AGTACACCATGGAGCCAATACCTTTAAAGCAAACAT        >  1:7130975/1‑36 (MQ=255)


                               cTACACCATGGAGCCAATACCTTTAAAGCAAACATG       <  1:6892283/35‑1 (MQ=255)


                               GTACACCATGGAGCCAATACCTTTAAAGCAAACATG       <  1:6011376/36‑1 (MQ=255)


                               GTACACCATGGAGCCAATACCTTTAAAGCAAACATG       <  1:7331082/36‑1 (MQ=255)


                                cACACCATGGAGCCAATACCTTTAAAGCAAACATGG      >  1:5373176/2‑36 (MQ=255)


                                  CACCGTGGAGCCAATACCTTTAAAGCAAACATGGAG    <  1:2044674/36‑1 (MQ=255)


                                  CACCATGGAGCCAATACCTTCAAAGCAAACATGGAG    >  1:513012/1‑36 (MQ=255)


                                   ACCATGGAGCCAATACCTTTAAAGCAAACATGGAGG   <  1:2803284/36‑1 (MQ=255)


                                   ACCATGGAGCCAATACCTTTAAAGCAAACATGGAGG   <  1:1989677/36‑1 (MQ=255)


                                    CCATGGAGCCAATACCTTTAAAGCAAACATGGAGGA  >  1:5146123/1‑36 (MQ=255)


TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACC..................................  >  REL606/590436‑590471


...................................ACCATGGAGCCAATACCTTTAAAGCAAACATGGAGGA  <  REL606/1821527‑1821492

Base quality scores:


ATCG

< 3 ≤


ATCG

< 10 ≤


ATCG

< 20 ≤


ATCG

< 29 ≤


ATCG

< 32 ≤


ATCG