New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 588495 =NA (NA)35 (0.680) 24/66 0.8 noncoding (1/1977 nt) IS150 repeat region
?REL606 1270660 = 0 (0.000)intergenic (‑167/+238) ldrC/chaA toxic polypeptide, small/calcium/sodium:proton antiporter

TTTCATCGTCCAACAAAATGGGTGCAGTACA..................................  <  REL606/588525‑588495
.............................CACCGGATAATTCCGGCTTGGTGTGGATACTACTTC  >  REL606/1270660‑1270693
                                                                 
TTTCATCGTCCAACAAAATGGGTGCAGTACACCGGA                               >  1:5972430/1‑36 (MQ=1)
    ATCGTCCAACAAAATGGGTGCAGTACACCGGATAAT                           >  1:1225376/1‑36 (MQ=1)
    ATCGTCCAACAAAATGGGTGCAGTACACCGGATAAT                           <  1:3138862/36‑1 (MQ=1)
     TCGTCCAACAAAATGGGTGCAGTACACCGGGTAATT                          >  1:6610910/1‑36 (MQ=0)
      CGTCCAACAAAATGGGTGCAGTACACCGGATAATTC                         <  1:6381328/36‑1 (MQ=1)
       GTCCAACAAAATGGGTGCAGTACACCGGATAATTCC                        <  1:527493/36‑1 (MQ=1)
       GTCCAACAAAATGGGTGCAGTACACCGGATAATTCC                        >  1:5769420/1‑36 (MQ=1)
        TCCAACAAAATGGGTGCAGTACACCGGATAATTCCG                       <  1:2397933/36‑1 (MQ=1)
        TCCAACAAAATGGGTGCAGTACACCGGATAATTCCG                       >  1:7079898/1‑36 (MQ=1)
        TCCAACAAAATGGGTGCAGTACACCGGATAATTCCG                       <  1:333542/36‑1 (MQ=1)
          CAACAAAATGGGTGCAGTACACCGGATAATTCCGGC                     >  1:2717495/1‑36 (MQ=1)
           AACAAAATGGGTGCAGTACACCGGATAATTCCGGCT                    >  1:1864671/1‑36 (MQ=1)
            ACAAAATGGGTGCAGTACACCGGATAATTTCGGCTT                   >  1:737801/1‑36 (MQ=0)
              AAAATGGGTGCAGTACACCGGATAATTCCGGCTTGG                 >  1:6357334/1‑36 (MQ=1)
               AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT                <  1:3433597/36‑1 (MQ=1)
               AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT                <  1:344623/36‑1 (MQ=1)
               AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT                >  1:3904869/1‑36 (MQ=1)
               AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT                <  1:4343978/36‑1 (MQ=1)
               AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT                >  1:5028562/1‑36 (MQ=1)
                AATGGGTGCAGTACACCGGATAATTCCGGCTTGGTG               >  1:4770633/1‑36 (MQ=1)
                AATGGGTGCAGTACACCGGATAATTCCGGCTTGGTG               >  1:915287/1‑36 (MQ=1)
                 ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTct              >  1:102094/1‑34 (MQ=1)
                 ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGT              <  1:231710/36‑1 (MQ=1)
                   GGGTGCGGTACACCGGATAATTCCGGCTTGGTGTGG            <  1:990305/36‑1 (MQ=0)
                   GGGTGCAGTACACCGGATGATTCCGGCTTGGTGTGG            <  1:1159401/36‑1 (MQ=0)
                    GGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGA           <  1:6523826/36‑1 (MQ=1)
                      TGCAGTACACCGGATAATTCCGGCTTGGTGTGGATA         >  1:4316707/1‑36 (MQ=1)
                        CAGTACACCGGATAATTCCGGCTTGGTGTGGATttt       >  1:2926234/1‑33 (MQ=0)
                        CAGTACACCGGATAATTCCGGCTTGGTGTGGATAat       >  1:771532/1‑34 (MQ=1)
                        CAGTACACCGGATAATTCCGGCTTGGTGTGGATACT       >  1:5032847/1‑36 (MQ=1)
                        CAGTACACCGGATAATTCCGGCTTGGTGTGGATACT       <  1:2773503/36‑1 (MQ=1)
                         AGTACACCGGATAATTCCGGCTTGGTGTGGATACat      >  1:1828566/1‑34 (MQ=1)
                         AGTACACCGGATAATTCCGGCTTGGTGTGGATACTA      >  1:7282557/1‑36 (MQ=1)
                          GTACACCGGATAATTCCGGCTTGGTGTGGATAATAt     >  1:5422376/1‑35 (MQ=0)
                            ACACCGGATAATTCCGGCTTGGTGTGGATACTACTT   <  1:3267286/36‑1 (MQ=32)
                             CACCGGATAATTCCGGCTTGGTGTGGATACTACTTt  >  1:7489939/1‑35 (MQ=1)
                                                                 
TTTCATCGTCCAACAAAATGGGTGCAGTACA..................................  <  REL606/588525‑588495
.............................CACCGGATAATTCCGGCTTGGTGTGGATACTACTTC  >  REL606/1270660‑1270693

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG