BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	REL606	1,821,525	IS150 (–) +3 bp	coding (573‑575/1041 nt)	ynjI	predicted inner membrane protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	REL606	= 590471	NA (NA)	45 (0.900)	27/64	0.5	noncoding (1977/1977 nt)	IS150	repeat region
*	?	REL606	= 1821527	65 (1.190)	45 (0.900)	27/64	0.5	coding (573/1041 nt)	ynjI	predicted inner membrane protein
*	?	REL606	1821525 =	50 (1.000)	55 (1.100)	39/64	0.0	coding (575/1041 nt)	ynjI	predicted inner membrane protein
*	?	REL606	3651091 =	NA (NA)	55 (1.100)	39/64	0.0	noncoding (1/1443 nt)	IS150	repeat region

Only 100 of 111 total aligned reads displayed.


TTGTGCCTTAATGGAGCATTTTCTTTCTGGCGACCATG...................................  <  REL606/1821560‑1821525


...................................ATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  >  REL606/3651091‑3651127


TTGTGCCTTAATGGAGCATTTTCTTTCTGGCGACCA                                       >  1:4111760/1‑36 (MQ=1)


TTGTGCCTTAATGGAGCATTTTCTTTCTGGCGACCA                                       <  1:2010298/36‑1 (MQ=1)


TTGTGCCTTAATGGAGCATTTTCTTTCTGACGACCA                                       >  1:7088212/1‑36 (MQ=0)


 TGTGCCTTAATGGAGCATTTTCTTTCTGGCGACCAT                                      >  1:5417049/1‑36 (MQ=1)


  GTGCCTTAATGGAGCATTTTCTTTCTGGCGACCATG                                     <  1:3223866/36‑1 (MQ=1)


  GTGCCTTAATGGAGCATTTTCTTTCTGGCGACCATG                                     >  1:2034114/1‑36 (MQ=1)


  GTGCCTAAATGGAGCATTTTCTTTCTGGCGACCATG                                     <  1:4435672/36‑1 (MQ=0)


   TGCCTTAATGGAGCATTTTCTTTCTGGCGACCATGT                                    <  1:6184830/36‑1 (MQ=1)


   TGCCTTAATGGAGCATTTTCTTTCTGGCGACCATGT                                    <  1:4123408/36‑1 (MQ=1)


   TGCCTTAATGGAGCATTTTCTTTCTGGCGACCATGT                                    >  1:7210678/1‑36 (MQ=1)


   TGCCTTAATGGAGCATTTTCTTTCTGGCGACCATGT                                    <  1:477/36‑1 (MQ=1)


    GCCTTAATGGAGCATTTTCTTTCTGGCGACCATGTA                                   <  1:6090007/36‑1 (MQ=1)


    GCCTTAATGGAGCATTTTCTTTCTGGCGACCATGTA                                   <  1:2460269/36‑1 (MQ=1)


    GCCTTAATGGAGCATTTTCTTTCTGGCGACCATGTA                                   <  1:5149410/36‑1 (MQ=1)


     CCTTAATGGAGCATTTTCTTTCTGGCGACCATGTAC                                  <  1:719203/36‑1 (MQ=1)


      CTTAATGGAGCATTTTCTTTCTGGCGACCATGTACT                                 >  1:7369400/1‑36 (MQ=1)


       TTAATGGAGCATTTTCTTTCTGGCGACCATGTACTG                                >  1:7349168/1‑36 (MQ=1)


        TAATGGAGCATTTTCTTTCTGGCGACCATGTACTGC                               <  1:6682829/36‑1 (MQ=1)


        TAATGGAGCATTTTCTTTCTGGCGACCATGTACTGC                               >  1:621987/1‑36 (MQ=1)


         AATGGAGCATTTTCTTTCTGGCGACCATGTACTGCA                              <  1:7394248/36‑1 (MQ=1)


            GGAGCATTTTCTTTCTGGCGACCATGTACTGCACCC                           >  1:3085215/1‑36 (MQ=1)


            GGAGCATTTTCTTTCTGGCGACCATGTACTGCACCC                           <  1:1211114/36‑1 (MQ=1)


             GAGCATTTTCTTTCTGGCGACCATGTACTGCACCCA                          <  1:6042750/36‑1 (MQ=1)


             GAGCATTTTCTTTCTGGCGACCATGTACTGCACCCA                          <  1:509459/36‑1 (MQ=1)


              AGCATTTTCTTTCTGGCGACCATGTACTGCACCCAT                         <  1:3381572/36‑1 (MQ=32)


              AGCATTTTCTTTCTGGCGACCATGTACTGCACCCAT                         >  1:1068183/1‑36 (MQ=32)


               GCATTTTCTTTCTGGCGACCATGTACTGCACCCATT                        <  1:1345479/36‑1 (MQ=35)


               GCATTTTCTTTCTGGCGACCATGTACTGCACCCATT                        <  1:1153850/36‑1 (MQ=35)


                CATTTTCTTTCTGGCGACCATGTACTGCACCCATTT                       <  1:7106863/36‑1 (MQ=38)


                CATTTTCTTTCTGGCGACCATGTACTGCACCCATTT                       >  1:5004768/1‑36 (MQ=38)


                 ATTTTCTTTCTGGCGACCATGTACTGCACCCATTTT                      <  1:6994959/36‑1 (MQ=40)


                 ATTTTCTTTCTGGCGACCATGTACTGCACCCATTTT                      >  1:7200548/1‑36 (MQ=40)


                 ATTTTCTTTCTGGCGACCATGTACTGCACCCATTTT                      >  1:4602106/1‑36 (MQ=40)


                  TTTTCTTTCTGGCGACCATGTACTGCACCCATTTTG                     <  1:5438125/36‑1 (MQ=38)


                  TTTTCTTTCTGGCGACCATGTACTGCACCCATTTTG                     <  1:4378964/36‑1 (MQ=38)


                  TTTTCTTTCTGGCGACCATGTACTGCACCCATTTTG                     <  1:943853/36‑1 (MQ=38)


                    TTCTTTCTGGCGACCATGTACTGCACCCATTTTGTT                   >  1:4194055/1‑36 (MQ=32)


                    TTCTTTCTGGCGACCATGTACTGCACCCATTTTGTT                   <  1:1771366/36‑1 (MQ=32)


                     TCTTTCTGGCGACCATGTACTGCACCCATTTTGTTG                  >  1:7178314/1‑36 (MQ=1)


                      CTTTCTGGCGACCATGTACTGCACCCATTTTGTTGG                 <  1:4411746/36‑1 (MQ=1)


                       TTTCTGGCGACCATGTACTGCACCCATTCTGTTGGA                >  1:6535607/1‑36 (MQ=0)


                        TTCTGGCGACCATGTACTGCACCCATTTTGTTGGAC               >  1:3157173/1‑36 (MQ=1)


                         TCTGGCGACCATGTACTGCACCCATTTTGTTGGACG              >  1:2329501/1‑36 (MQ=1)


                          CTGGCGACCATGTACTGCACCCATTTTGTTGGACGA             <  1:3340945/36‑1 (MQ=1)


                          CTGGCGACCATGTACTGCACCCATTTTGTTGGACGA             >  1:2388242/1‑36 (MQ=1)


                           TGGCGACCATGTACTGCACCCATTTTGTTGGACGAT            >  1:5679395/1‑36 (MQ=1)


                           TGGCGACCATGTACTGCACCCATTTTGTTGGACGAT            <  1:5299728/36‑1 (MQ=1)


                            GGCGACCATGTACTGCACCCATTTTGTTGGACGATG           >  1:231739/1‑36 (MQ=1)


                             gtGACCATGTACTGCACCCATTTTGTTGGACGATGA          <  1:2925509/34‑1 (MQ=1)


                             GCGACCATGTACTGCACCCATTTTGTTGGACGATGA          <  1:5621836/36‑1 (MQ=1)


                              CGACCATGTACTGCACCCATTTTGTTGGACGATGAA         <  1:6974610/36‑1 (MQ=1)


                              CGACCATGTACTGCACCCATTTTGTTGGACGATGAA         <  1:3895542/36‑1 (MQ=1)


                               GACCATGTACTGCACCCATTTTGTTGGACGATGAAA        >  1:5477106/1‑36 (MQ=1)


                                ACCATGTACTGCACCCATTTTGTTGGACGATGAAAT       <  1:2314910/36‑1 (MQ=1)


                                ACCATGTACTGCACCCATTTTGTTGGACGATGAAAT       <  1:2647767/36‑1 (MQ=1)


                                 cggTGTACTGCACCCATTTTGTTGGACGATGAAATG      <  1:834961/33‑1 (MQ=1)


                                 cggTGTACTGCACCCATTTTGTTGGACGATGAAATG      <  1:6519660/33‑1 (MQ=1)


                                 cggTGTACTGCACCCATTTTGTTGGACGATGAAATG      >  1:3967605/4‑36 (MQ=1)


                                 aagTGTACTGCACCCATTTTGTTGGACGATGAAATG      >  1:3056122/4‑36 (MQ=35)


                                  ggTGTACTGCACCCATTTTGTTGGACGATGAAATGG     <  1:2783888/34‑1 (MQ=1)


                                  ggTGTACTGCACCCATTTTGTTGGACGATGAAATGG     >  1:2129296/3‑36 (MQ=1)


                                  ggTGTACTGCACCCATTTTGTTGGACGATGAAATGG     >  1:821615/3‑36 (MQ=1)


                                  agTGTACTGCACCCATTTTGTTGGACGATGAAATGG     <  1:2657533/34‑1 (MQ=32)


                                  CATGTACTGCACCCATTTTGTTGGACGATGAAATGG     <  1:122046/36‑1 (MQ=1)


                                  CATGTACTGCACCCATTTTGTTGGACGATGAAATGG     >  1:1726018/1‑36 (MQ=1)


                                   gTGTACTGCACCCATTTTGTTGGACGATGAAATGGA    >  1:2035613/2‑36 (MQ=1)


                                   gTGTACTGCACCCATTTTGTTGGACGATGAAATGGA    >  1:3526335/2‑36 (MQ=1)


                                   gTGTACTGCACCCATTTTGTTGGACGATGAAATGGA    >  1:7183951/2‑36 (MQ=1)


                                   gTGTACTGCACCCATTTTGTTGGACGATGAAAAGGA    >  1:5067109/2‑36 (MQ=0)


                                   ATGTACTGCACCCATTTTGTTGGACGATGAAATGGA    <  1:5372411/36‑1 (MQ=1)


                                   ATGTACTGCACCCATTTTGTTGGACGATGAAATGGA    >  1:3828205/1‑36 (MQ=1)


                                   ATGTACTGCACCCATTTTGTTGGACGATGAAATGGA    <  1:190257/36‑1 (MQ=1)


                                    TGTTCTGCACCCATTTTGTTGGACGATGAAATGGAA   <  1:3952019/36‑1 (MQ=0)


                                    TGTACTGCACCCATTTTGTTGGACGATGAAATTGAA   <  1:1664773/36‑1 (MQ=0)


                                    TGTACTGCACCCATTTTGTTGGACGATGAAATGGAA   >  1:3048025/1‑36 (MQ=1)


                                    TGTACTGCACCCATTTTGTTGGACGATGAAATGGAA   >  1:798407/1‑36 (MQ=1)


                                    TGTACTGCACCCATTTTGTTGGACGATGAAATGGAA   >  1:1787993/1‑36 (MQ=1)


                                    TGTACTGCACCCATTTTGTTGGACGATGAAATGGAA   <  1:725966/36‑1 (MQ=1)


                                    TGTACTGCACCCATTTTGTTGGACGATGAAATGGAA   >  1:1109226/1‑36 (MQ=1)


                                    TGTACTGCACCCATTTTGTTGGACGATGAAATGGAA   <  1:3679898/36‑1 (MQ=1)


                                    TGTACTGCACCCATTTTGTTGGACGATGAAATGGAA   <  1:5675834/36‑1 (MQ=1)


                                    TGTACTGCACCCATTTTGTTGGACGATGAAATGGAA   <  1:2971586/36‑1 (MQ=1)


                                    TGTACTGCACCCATTTTGTTGGACGATGAAATGGAA   >  1:2821905/1‑36 (MQ=1)


                                    TGTACTGCACCCATTTTGTTGGACGATGAAATGGAA   >  1:4301595/1‑36 (MQ=1)


                                    TGTACTGCACCCATTTTGTTGGACGATGAAATGGAA   >  1:2354346/1‑36 (MQ=1)


                                    TGTACAGCACCCATTTTGTTGGACGATGAAATGGAA   <  1:4147216/36‑1 (MQ=0)


                                     GTACTGCACCCATTTTGTTGGACGATGAAATGGAgt  <  1:168861/36‑3 (MQ=1)


                                     GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  >  1:1074212/1‑36 (MQ=1)


                                     GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  >  1:2772298/1‑36 (MQ=1)


                                     GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  >  1:5032886/1‑36 (MQ=1)


                                     GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  <  1:1121219/36‑1 (MQ=1)


                                     GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  <  1:7358716/36‑1 (MQ=1)


                                     GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  <  1:730833/36‑1 (MQ=1)


                                     GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  >  1:5293174/1‑36 (MQ=1)


                                     GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  >  1:7223033/1‑36 (MQ=1)


                                     GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  <  1:1568848/36‑1 (MQ=1)


                                     GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  >  1:4266914/1‑36 (MQ=1)


                                     GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  >  1:5397488/1‑36 (MQ=1)


                                     GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  <  1:2341462/36‑1 (MQ=1)


                                     GTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  <  1:5782976/36‑1 (MQ=1)


TTGTGCCTTAATGGAGCATTTTCTTTCTGGCGACCATG...................................  <  REL606/1821560‑1821525


...................................ATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT  >  REL606/3651091‑3651127

Base quality scores:


ATCG

< 3 ≤


ATCG

< 14 ≤


ATCG

< 24 ≤


ATCG

< 30 ≤


ATCG

< 32 ≤


ATCG