Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp intergenic (‑14/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 16972 =52 (0.980)62 (1.160) 23/68 1.0 intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 3893554 = NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 1697456 (1.190)0 (0.000) 27/60 0.4 intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

AGAGAAAAGCCCCGAGTGATATTTTACTATCAACC..................................  <  REL606/17006‑16972
..................................CTGTACTGCACCCATTTTGTTGGACGATGAAATGG  >  REL606/3893554‑3893587
                                                                     
AGAGAAAAGCCCCGAGTGATATTTTACTATCAACCT                                   >  1:50335/1‑36 (MQ=255)
AGAGAAAAGCCCCGAGTGATATTTTACTATCAACCT                                   >  1:3947821/1‑36 (MQ=255)
 GAGAAAAGCCCCGAGTGATATTTTACTATCAACCTG                                  <  1:2171522/36‑1 (MQ=255)
  AGAAAAGCCCCGAGTGATATTTTACTATCAACCTGT                                 >  1:922425/1‑36 (MQ=255)
   GAAAAGCCCCGAGTGATATTTTACTATCAACCTGTA                                >  1:4755282/1‑36 (MQ=255)
    AAAAGCCCCGAGTGATATTTTACTATCAACCTGTAC                               >  1:857310/1‑36 (MQ=255)
    AAAAGCCCCGAGTGATATTTTACTATCAACCTGTAC                               >  1:2447902/1‑36 (MQ=255)
      AAGCCCCGAGTGATATTTTACTATCAACCTGTACTG                             >  1:5088594/1‑36 (MQ=255)
      AAGCCCCGAGTGATATTTTACTATCAACCTGTACTG                             >  1:1711134/1‑36 (MQ=255)
       AGCCCCGAGAGATATTTTACTATCAACCTGTACTGC                            <  1:6077658/36‑1 (MQ=255)
           CCGAGTAATATTTTACTATCAACCTGTACTGCACCC                        <  1:7078153/36‑1 (MQ=255)
             GAGTGATATTTTACTATCAACCTGTACTGCACCCAT                      >  1:2469321/1‑36 (MQ=255)
              AGTGATATTTTACTATCAACCTGTACTGCACCCATT                     >  1:6013498/1‑36 (MQ=255)
              AGTGATATTTTACTATCAACCTGTACTGCACCCATT                     >  1:270010/1‑36 (MQ=255)
                TGATATTTTACTATCAACCTGTACTGCACCCATTTT                   >  1:6949456/1‑36 (MQ=255)
                TGATATTTTACTATCAACCTGTACTGCACCCATTTT                   <  1:7309779/36‑1 (MQ=255)
                TGATATTTTACTATCAACCTGTACTGCACCCATTTT                   >  1:4958101/1‑36 (MQ=255)
                TGATATTTTACTATCAACCTGTACTGCACCCATTTT                   >  1:1493817/1‑36 (MQ=255)
                  ATATTTTACTATCAACCTGTATTGCACCCATTTTGT                 >  1:2257065/1‑36 (MQ=255)
                  ATATTTTACTATCAACCTGTACTGCACCCATTATGT                 >  1:4790515/1‑36 (MQ=255)
                   TATTTTACTATCAACCTGTACTGCACCCATTTTGTT                <  1:73612/36‑1 (MQ=255)
                   TATTTTACTATCAACCTGTACTGCACCCATTTTGTT                >  1:125870/1‑36 (MQ=255)
                    ATTTTACTATCAACCTGTACTGCACCCATTTTGTTG               >  1:1495778/1‑36 (MQ=255)
                    ATTTTACTATCAACCTGTACTGCACCCATTTTGTTG               <  1:1325593/36‑1 (MQ=255)
                    ATTTTACTATCAACCTGTACTGCACCCATTTTGTTG               >  1:3322049/1‑36 (MQ=255)
                    ATTTTACTATCAACCTGTACTGCACCCATTTTGTTG               <  1:5290773/36‑1 (MQ=255)
                     TTTTACTATCAACCTGTACTGCACCCATTTTGTTGG              >  1:6269135/1‑36 (MQ=255)
                      TTTACTATCAACCTGTACTGCACCCATTTTGTTGGA             >  1:1969473/1‑36 (MQ=255)
                       TTACTATCAACCTGTACTGCACCCATTTTGTTGGAC            <  1:5618638/36‑1 (MQ=255)
                       TTACTATCAACCTGTACTGCACCCATTTTGTTGGAC            >  1:6272350/1‑36 (MQ=255)
                        TACTATCAACCTGTACTGCACCCATTTTGTTGGACG           >  1:2844169/1‑36 (MQ=255)
                        TACTATCAACCTGTACTGCACCCATTTTGTTGGACG           <  1:5739600/36‑1 (MQ=255)
                          CTATCAACCTGTACTGCACCCATTTTGTTGGACGAT         >  1:4474419/1‑36 (MQ=255)
                          CTATCAACCTGTACTGCACCCATTTTGTTGGACGAT         <  1:5640521/36‑1 (MQ=255)
                          CTATCAACCTGTACTGCACCCATTTTGTTGGACGAT         >  1:6161269/1‑36 (MQ=255)
                          CTATCAACCTGTACTGCACCCATTTTGTTGGACGAT         >  1:2521671/1‑36 (MQ=255)
                          CTATCAACCTGTACTGCACCCATTTTGTTGGACGAT         >  1:984453/1‑36 (MQ=255)
                           TATCAACCTGTACTGCACCCATTTTGTTGGACGATG        <  1:3865091/36‑1 (MQ=255)
                           TATCAACCTGTACTGCACCCATTTTGTTGGACGATG        <  1:1182391/36‑1 (MQ=255)
                            ATCAACCTGTACTGCACCCATTTTGTTGGACGATGA       <  1:4948024/36‑1 (MQ=255)
                            ATCAACCTGTACTGCACCCATTTTGTTGGACGATGA       >  1:7160126/1‑36 (MQ=255)
                            ATCAACCTGTACTGCACCCATTTTGTTGGACGATGA       >  1:3454125/1‑36 (MQ=255)
                            ATCAACCTGTACTGCACCCATTTTGTTGGACGATGA       >  1:1225224/1‑36 (MQ=255)
                            ATCAACCTGTACTGCACCCATTTTGTTGGACGATGA       >  1:6278753/1‑36 (MQ=255)
                            ATCAACCTGTACTGAACCCATTTTGTTGGACGATGA       >  1:6849688/1‑36 (MQ=255)
                             TCAACCTGTACTGCACCCATTTTGTTGGACGATGAA      >  1:744184/1‑36 (MQ=255)
                              CAACCTGTACTGCACCCATTTTGTTGGACGATGAAA     <  1:4774667/36‑1 (MQ=40)
                              CAACCTGTACTGCACCCATTTTGTTGGACGATGAAA     >  1:3906480/1‑36 (MQ=40)
                              CAACCTGTACTGCACCCATTTTGTTGGACGATGAAA     >  1:2878251/1‑36 (MQ=40)
                               AACCTGTACTGCACCCATTTTGTTGGACGATGTAAT    >  1:4664655/1‑36 (MQ=255)
                               AACCTGTACTGCACCCATTTTGTTGGACGATGATAT    >  1:2647117/1‑36 (MQ=255)
                               AACCTGTACTGCACCCATTTTGTTGGACGATGAAAT    <  1:5323732/36‑1 (MQ=38)
                               AACCTGTACTGCACCCATTTTGTTGGACGATGAAAT    >  1:3697993/1‑36 (MQ=38)
                               AACCTGTACTGCACCCATTTTGTTGGACGATGAAAT    >  1:3084830/1‑36 (MQ=38)
                               AACCTGTACTGCACCCATTTTGTTGGACGATGAAAT    >  1:2444431/1‑36 (MQ=38)
                               AACCTGTACTGCACCCATTTTGTTGGACGATGAAAT    >  1:1082745/1‑36 (MQ=38)
                                ACCTGTACTGCACCCATTTTGTTGGACGATGAAATG   >  1:6973936/1‑36 (MQ=35)
                                ACCTGTACTGCACCCATTTTGTTGGACGATGAAATG   <  1:7291405/36‑1 (MQ=35)
                                ACCTGTACTGCACCCATTTTGTTGGACGATGAAATG   >  1:3078541/1‑36 (MQ=35)
                                 CCTGTACTGCTCCCATTTTGTTGGACGATGAAATGG  >  1:3685946/1‑36 (MQ=12)
                                 CCTGTACTGCACCCATTTTGTTGGACGATGAAATGG  <  1:6359165/36‑1 (MQ=32)
                                 CCTGTACTGCACCCATTTTGTTGGACGATGAAATGG  >  1:4758056/1‑36 (MQ=32)
                                                                     
AGAGAAAAGCCCCGAGTGATATTTTACTATCAACC..................................  <  REL606/17006‑16972
..................................CTGTACTGCACCCATTTTGTTGGACGATGAAATGG  >  REL606/3893554‑3893587

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 24 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG