New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 = 161953134 (0.780)10 (0.230) 6/56 4.1 intergenic (‑140/+77) rem/hokD predicted protein/small toxic polypeptide
?REL606 2353399 = 35 (0.640)coding (1545/1833 nt) yfbS predicted transporter
Rejected: Position hash score below cutoff.

AGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGA..................................  >  REL606/1619490‑1619531
...................................CCGCCGACAAGACAAACAAACACCCCAGCATCATATGTGGC  >  REL606/2353399‑2353432
                                                                            
AGAACTTCAAACGCGTTGAAAATAAAAACAAAAACC                                          >  1:2840976/1‑36 (MQ=255)
 GAACTTCAAACGCGTTGAAAATAAAAACAAAAACCC                                         <  1:1461613/36‑1 (MQ=255)
  AACTTCAAACGCGTTGAAAATAAAAACAAAAACCCG                                        >  1:1628114/1‑36 (MQ=255)
   ACTTCAAACGCGTTGAAAATAAAAACAAAACCCCGC                                       >  1:3591166/1‑36 (MQ=255)
   ACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGC                                       >  1:6473317/1‑36 (MQ=255)
     ttaAAACGCGTTGAAAATAAAAACAAAAACCCGCCG                                     <  1:1103897/33‑1 (MQ=255)
     TTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCG                                     >  1:6955858/1‑36 (MQ=255)
     TTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCG                                     >  1:3685857/1‑36 (MQ=255)
                       AAACACAAAAACCCGCCGACAAGACAAACAAACACC                   <  1:3127379/36‑1 (MQ=255)
                         accCAAAAACCCGCCGACAAGACAAACAAACACCCC                 <  1:6284851/33‑1 (MQ=255)
                           ACAAACACCCGCCGACAAGACAAACAAACACCCCAG               <  1:6228186/36‑1 (MQ=255)
                           ACAAAAACCCGCCGACAAGACAAACAAACACCCCAG               <  1:4920473/36‑1 (MQ=255)
                            CAAAAACCCGCCGACAAGACAAACAAACACCCCAGC              <  1:3134333/36‑1 (MQ=255)
                             atAAACCCGCCGACAAGACAAACAAACACCCCAGCA             <  1:1132612/34‑1 (MQ=255)
                               aacCCCGCCGACAAGACAAACAAACACCCCAGCATC           <  1:4764903/33‑1 (MQ=255)
                               AAACCCGCCGACAAGACAAACAAACACCCCAGCATC           <  1:2618581/36‑1 (MQ=255)
                                 ACCCGCCGACAAGACAAACAAACACCCCAGCATCAT         <  1:1091491/36‑1 (MQ=255)
                                  CCCGCCGACAAGACAAACAAACACCCCAGCATCATA        <  1:5278856/36‑1 (MQ=255)
                                   CCGCCGACAAGACAAACAAACACCCCAGCATCATAT       <  1:2681226/36‑1 (MQ=255)
                                   CCGCCGACAAGACAAACAAACACCCCAGCATCATAT       >  1:7364381/1‑36 (MQ=255)
                                   CCGCCGACAAGACAAACAAACACCCCAGCAACATAT       >  1:6913912/1‑36 (MQ=255)
                                      CCGACAAGACAAACAAACACCCCAGCATCATATGTG    >  1:2616797/1‑36 (MQ=255)
                                       CGACAAGACAAACAAACACCCCAGCATCATATGTGG   <  1:5436844/36‑1 (MQ=255)
                                        GACAAGACAAACAAACACCCCAGCATCATATGCGGC  >  1:6769577/1‑36 (MQ=255)
                                                                            
AGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGA..................................  >  REL606/1619490‑1619531
...................................CCGCCGACAAGACAAACAAACACCCCAGCATCATATGTGGC  >  REL606/2353399‑2353432

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 13 ≤  ATCG  < 28 ≤  ATCG  < 32 ≤  ATCG