New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 = 161763344 (0.940)8 (0.170) 6/60 4.4 intergenic (+41/+115) ECB_01527/ECB_01528 putative lipoprotein/antitermination protein Q homolog from lambdoid prophage DLP12
?REL606 4347927 = 25 (0.460)coding (1207/1257 nt) yjeH predicted transporter
Rejected: Position hash score below cutoff.

ATCCCCACCCGAAATGATACTTATTAGAAAAAAACCAGCC...................................  >  REL606/1617594‑1617633
...................................CAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTT  >  REL606/4347927‑4347961
                                                                           
ATCCCCACCCGAAATGATACTTATTAGAAAAAAACC                                         <  1:949014/36‑1 (MQ=255)
ATCCCCACCCGAAATGATACTTATTAGAAAAAAACC                                         >  1:6830486/1‑36 (MQ=255)
  CCCCACCCGAAATGATACTTATTAGAAAAAAACCAG                                       >  1:3630404/1‑36 (MQ=255)
                         AGAAAAAAACCAGCCATAACCCCGCCAGCATGATCA                <  1:3268062/36‑1 (MQ=35)
                           AAAAAAACCAGCCATAACCCCGCCAGCATGATCAGC              <  1:5397265/36‑1 (MQ=1)
                            AAAAAACCAGCCATAACCCCGCCAGCATGATCAGCG             <  1:2517040/36‑1 (MQ=1)
                              AAACCCAGCCATAACCCCGCCAGCATGATCAGCGCA           <  1:2615336/36‑1 (MQ=12)
                              AAAACCAGCCATAACCCCGCCAGCATGATCAGCGCA           <  1:1807520/36‑1 (MQ=32)
                               AAACCAGCCATAACCCCGCCAGCATGGTCAGCGCAT          <  1:4076964/36‑1 (MQ=255)
                               AAACCACCCATAACCCCGCCAGCATGATCAGCGCAT          <  1:7320832/36‑1 (MQ=255)
                                AACCAGCCATAACCCCGCCAGCATGATCAGCGCATA         <  1:5033265/36‑1 (MQ=38)
                                   CAGCCATAACCCCGCCAGCATGATCAGCGCATAGAG      <  1:6155298/36‑1 (MQ=255)
                                   CAGCCATAACCCCGCCAGCATGATCAGCGCATAGAG      >  1:7372753/1‑36 (MQ=255)
                                    AGCCATAACCCCGCCAGCATGATCAGCGCATAGAGA     <  1:5065741/36‑1 (MQ=255)
                                    AGCCATAACCCCGCCAGCATGATCAGCGCATAGAGA     >  1:4602992/1‑36 (MQ=255)
                                    AGCAATAACCCCGCCAGCATGATCAGCGCATAGAGA     <  1:740436/36‑1 (MQ=255)
                                       CATAACCCCGCCAGCATGATCAGCGCATAGAGACTT  >  1:5019864/1‑36 (MQ=255)
                                                                           
ATCCCCACCCGAAATGATACTTATTAGAAAAAAACCAGCC...................................  >  REL606/1617594‑1617633
...................................CAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTT  >  REL606/4347927‑4347961

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 13 ≤  ATCG  < 29 ≤  ATCG  < 32 ≤  ATCG